Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
HMGB3O15347 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB3O15347 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
HMGB3O15347 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
HMGB3O15347 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HMGB3O15347 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB3O15347 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB3O15347 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
HMGB3O15347 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB3O15347 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGB3O15347 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.37■□□□□ 0.53
HMGB3O15347 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB3O15347 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB3O15347 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB3O15347 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGB3O15347 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB3O15347 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB3O15347 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB3O15347 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB3O15347 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB3O15347 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB3O15347 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB3O15347 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
HMGB3O15347 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
HMGB3O15347 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
HMGB3O15347 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB3O15347 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB3O15347 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB3O15347 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB3O15347 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
HMGB3O15347 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB3O15347 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
HMGB3O15347 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGB3O15347 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB3O15347 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB3O15347 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGB3O15347 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB3O15347 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB3O15347 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB3O15347 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC18.35■□□□□ 0.53
HMGB3O15347 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB3O15347 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB3O15347 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGB3O15347 AL117328.2-201ENST00000624617 1940 ntBASIC18.35■□□□□ 0.53
HMGB3O15347 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HMGB3O15347 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB3O15347 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB3O15347 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB3O15347 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB3O15347 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGB3O15347 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
HMGB3O15347 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB3O15347 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.34■□□□□ 0.53
HMGB3O15347 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.34■□□□□ 0.53
HMGB3O15347 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB3O15347 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB3O15347 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
HMGB3O15347 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGB3O15347 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.33■□□□□ 0.52
HMGB3O15347 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB3O15347 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB3O15347 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB3O15347 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB3O15347 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB3O15347 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
HMGB3O15347 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB3O15347 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.52
HMGB3O15347 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB3O15347 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB3O15347 EP400NL-214ENST00000641289 2402 ntBASIC18.32■□□□□ 0.52
HMGB3O15347 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB3O15347 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB3O15347 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
HMGB3O15347 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB3O15347 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB3O15347 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB3O15347 BOD1-206ENST00000480951 814 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGB3O15347 CHML-204ENST00000638121 920 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGB3O15347 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB3O15347 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB3O15347 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB3O15347 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
HMGB3O15347 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB3O15347 AP006261.1-201ENST00000584783 668 ntBASIC18.31■□□□□ 0.52
HMGB3O15347 AC044849.2-201ENST00000606596 710 ntBASIC18.31■□□□□ 0.52
HMGB3O15347 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGB3O15347 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HMGB3O15347 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
HMGB3O15347 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
HMGB3O15347 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB3O15347 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB3O15347 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB3O15347 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB3O15347 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB3O15347 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB3O15347 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB3O15347 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
HMGB3O15347 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
HMGB3O15347 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB3O15347 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms