RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 NISCHQ9Y2I1 1504 aa47.04■■■■■ 5.12
UPF3A-201ENST00000351487 CCDC180Q9P1Z9 1646 aa40.38■■■■■ 4.05
UPF3A-201ENST00000351487 ZCCHC6Q5VYS8 1495 aaKnown RBP39.8■■■■□ 3.96
UPF3A-201ENST00000351487 SHROOM4Q9ULL8 1493 aa39.4■■■■□ 3.9
UPF3A-201ENST00000351487 DCAF1Q9Y4B6 1507 aa38.83■■■■□ 3.81
UPF3A-201ENST00000351487 SUPT5HO00267 1087 aaKnown RBP38.5■■■■□ 3.75
UPF3A-201ENST00000351487 DCAF8L2P0C7V8 631 aa38.46■■■■□ 3.75
UPF3A-201ENST00000351487 MYO15BQ96JP2 1530 aa37.86■■■■□ 3.65
UPF3A-201ENST00000351487 ABCC9O60706 1549 aa37.53■■■■□ 3.6
UPF3A-201ENST00000351487 CHIC1Q5VXU3 224 aa37.51■■■■□ 3.6
UPF3A-201ENST00000351487 SCRIBQ14160 1630 aa37.43■■■■□ 3.58
UPF3A-201ENST00000351487 NACADO15069 1562 aa37.28■■■■□ 3.56
UPF3A-201ENST00000351487 RSF1Q96T23 1441 aaPredicted RBP37.02■■■■□ 3.52
UPF3A-201ENST00000351487 RB1CC1Q8TDY2 1594 aa36.7■■■■□ 3.47
UPF3A-201ENST00000351487 CECR2Q9BXF3 1484 aa36.52■■■■□ 3.44
UPF3A-201ENST00000351487 MROH2BQ7Z745 1585 aa36.45■■■■□ 3.43
UPF3A-201ENST00000351487 WIZO95785 1651 aa36.25■■■■□ 3.39
UPF3A-201ENST00000351487 BAZ1AQ9NRL2 1556 aaPredicted RBP36.2■■■■□ 3.39
UPF3A-201ENST00000351487 LOC105371045A0A1W2PR82 267 aa36.18■■■■□ 3.38
UPF3A-201ENST00000351487 UNC13AQ9UPW8 1703 aa36.15■■■■□ 3.38
UPF3A-201ENST00000351487 TRIM41Q8WV44 630 aa36.03■■■■□ 3.36
UPF3A-201ENST00000351487 SMARCA4P51532 1647 aa35.92■■■■□ 3.34
UPF3A-201ENST00000351487 HRCP23327 699 aa35.89■■■■□ 3.34
UPF3A-201ENST00000351487 PCGF6Q9BYE7 350 aa35.88■■■■□ 3.33
UPF3A-201ENST00000351487 EIF4G1Q04637 1599 aaKnown RBP35.86■■■■□ 3.33
UPF3A-201ENST00000351487 TOP2AP11388 1531 aaKnown RBP35.83■■■■□ 3.33
UPF3A-201ENST00000351487 BICRAQ9NZM4 1560 aa35.64■■■■□ 3.3
UPF3A-201ENST00000351487 SMARCA2P51531 1590 aa35.57■■■■□ 3.28
UPF3A-201ENST00000351487 CCDC88BA6NC98 1476 aa35.51■■■■□ 3.27
UPF3A-201ENST00000351487 FAM9AQ8IZU1 332 aaPredicted RBP35.49■■■■□ 3.27
UPF3A-201ENST00000351487 TRIM26Q12899 539 aaPredicted RBP35.49■■■■□ 3.27
UPF3A-201ENST00000351487 PEG3Q9GZU2 1588 aa35.39■■■■□ 3.26
UPF3A-201ENST00000351487 PABPN1Q86U42 306 aaKnown RBP eCLIP35.28■■■■□ 3.24
UPF3A-201ENST00000351487 ABCC8Q09428 1581 aa35.26■■■■□ 3.23
UPF3A-201ENST00000351487 EHMT2Q96KQ7 1210 aa35■■■■□ 3.19
UPF3A-201ENST00000351487 ATAD2BQ9ULI0 1458 aa34.98■■■■□ 3.19
UPF3A-201ENST00000351487 PPARGC1BQ86YN6 1023 aaKnown RBP34.92■■■■□ 3.18
UPF3A-201ENST00000351487 EEA1Q15075 1411 aa34.91■■■■□ 3.18
UPF3A-201ENST00000351487 BAZ1BQ9UIG0 1483 aaKnown RBP34.85■■■■□ 3.17
UPF3A-201ENST00000351487 SOGA1O94964 1423 aa34.83■■■■□ 3.17
UPF3A-201ENST00000351487 WRNQ14191 1432 aaPredicted RBP eCLIP34.78■■■■□ 3.16
UPF3A-201ENST00000351487 ZEB1P37275 1124 aaPredicted RBP34.68■■■■□ 3.14
UPF3A-201ENST00000351487 TNIKQ9UKE5 1360 aa34.67■■■■□ 3.14
UPF3A-201ENST00000351487 SYNJ1O43426 1573 aa34.66■■■■□ 3.14
UPF3A-201ENST00000351487 RUSC2Q8N2Y8 1516 aa34.65■■■■□ 3.14
UPF3A-201ENST00000351487 CEP162Q5TB80 1403 aa34.62■■■■□ 3.13
UPF3A-201ENST00000351487 CSRNP3Q8WYN3 585 aa34.62■■■■□ 3.13
UPF3A-201ENST00000351487 GOLGA3Q08378 1498 aa34.54■■■■□ 3.12
UPF3A-201ENST00000351487 HMGXB3Q12766 1538 aa34.49■■■■□ 3.11
UPF3A-201ENST00000351487 KIF21BO75037 1637 aa34.46■■■■□ 3.11
UPF3A-201ENST00000351487 NCAPD3P42695 1498 aa34.42■■■■□ 3.1
UPF3A-201ENST00000351487 CEP164Q9UPV0 1460 aa34.39■■■■□ 3.1
UPF3A-201ENST00000351487 TOP2BQ02880 1626 aa34.36■■■■□ 3.09
UPF3A-201ENST00000351487 BIVM-ERCC5R4GMW8 1640 aa34.31■■■■□ 3.08
UPF3A-201ENST00000351487 UBTFP17480 764 aaKnown RBP34.31■■■■□ 3.08
UPF3A-201ENST00000351487 RAPGEF2Q9Y4G8 1499 aa34.06■■■■□ 3.04
UPF3A-201ENST00000351487 CFTRP13569 1480 aa34.04■■■■□ 3.04
UPF3A-201ENST00000351487 CLIP1P30622 1438 aa34.04■■■■□ 3.04
UPF3A-201ENST00000351487 PRDM2Q13029 1718 aa33.99■■■■□ 3.03
UPF3A-201ENST00000351487 CUX1P39880 1505 aa33.99■■■■□ 3.03
UPF3A-201ENST00000351487 ERICH3Q5RHP9 1530 aa33.97■■■■□ 3.03
UPF3A-201ENST00000351487 VPS8Q8N3P4 1428 aa33.93■■■■□ 3.02
UPF3A-201ENST00000351487 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.92■■■■□ 3.02
UPF3A-201ENST00000351487 PRXQ9BXM0 1461 aa33.9■■■■□ 3.02
UPF3A-201ENST00000351487 CCER1Q8TC90 406 aaPredicted RBP33.88■■■■□ 3.01
UPF3A-201ENST00000351487 TTBK1Q5TCY1 1321 aaPredicted RBP33.87■■■■□ 3.01
UPF3A-201ENST00000351487 KIF27Q86VH2 1401 aa33.76■■■□□ 2.99
UPF3A-201ENST00000351487 CADPSQ9ULU8 1353 aa33.64■■■□□ 2.98
UPF3A-201ENST00000351487 CC2D2AQ9P2K1 1620 aa33.62■■■□□ 2.97
UPF3A-201ENST00000351487 ARAP1Q96P48 1450 aa33.58■■■□□ 2.97
UPF3A-201ENST00000351487 APLP2Q06481 763 aa33.55■■■□□ 2.96
UPF3A-201ENST00000351487 RANGAP1P46060 587 aaPredicted RBP33.44■■■□□ 2.94
UPF3A-201ENST00000351487 CUX2O14529 1486 aa33.42■■■□□ 2.94
UPF3A-201ENST00000351487 FGD5Q6ZNL6 1462 aa33.4■■■□□ 2.94
UPF3A-201ENST00000351487 IGF1RP08069 1367 aa33.35■■■□□ 2.93
UPF3A-201ENST00000351487 ARHGAP35Q9NRY4 1499 aa33.33■■■□□ 2.93
UPF3A-201ENST00000351487 FANCD2Q9BXW9 1451 aa33.31■■■□□ 2.92
UPF3A-201ENST00000351487 HNRNPUL2Q1KMD3 747 aaKnown RBP33.3■■■□□ 2.92
UPF3A-201ENST00000351487 DNMBPQ6XZF7 1577 aa33.24■■■□□ 2.91
UPF3A-201ENST00000351487 CARMIL1Q5VZK9 1371 aa33.19■■■□□ 2.9
UPF3A-201ENST00000351487 KANK4Q5T7N3 995 aaPredicted RBP33.14■■■□□ 2.9
UPF3A-201ENST00000351487 RRBP1Q9P2E9 1410 aaKnown RBP33.14■■■□□ 2.9
UPF3A-201ENST00000351487 ABCA10Q8WWZ4 1543 aa33.11■■■□□ 2.89
UPF3A-201ENST00000351487 TOPBP1Q92547 1522 aa33.11■■■□□ 2.89
UPF3A-201ENST00000351487 DIEXFQ68CQ4 756 aaKnown RBP33.09■■■□□ 2.89
UPF3A-201ENST00000351487 MAP3K1Q13233 1512 aa33.08■■■□□ 2.89
UPF3A-201ENST00000351487 POLA1P09884 1462 aaPredicted RBP33.05■■■□□ 2.88
UPF3A-201ENST00000351487 LAMC3Q9Y6N6 1575 aa33.05■■■□□ 2.88
UPF3A-201ENST00000351487 NESP48681 1621 aa33.03■■■□□ 2.88
UPF3A-201ENST00000351487 TIAM1Q13009 1591 aa33■■■□□ 2.87
UPF3A-201ENST00000351487 ZNF316A6NFI3 1004 aaPredicted RBP33■■■□□ 2.87
UPF3A-201ENST00000351487 RAD54L2Q9Y4B4 1467 aa32.98■■■□□ 2.87
UPF3A-201ENST00000351487 CUL7Q14999 1698 aa32.98■■■□□ 2.87
UPF3A-201ENST00000351487 CLSPNQ9HAW4 1339 aa32.97■■■□□ 2.87
UPF3A-201ENST00000351487 WDR97A6NE52 1622 aa32.94■■■□□ 2.86
UPF3A-201ENST00000351487 CCNB3Q8WWL7 1395 aa32.91■■■□□ 2.86
UPF3A-201ENST00000351487 FHAD1B1AJZ9 1412 aa32.89■■■□□ 2.86
UPF3A-201ENST00000351487 DHX57Q6P158 1386 aaKnown RBP32.89■■■□□ 2.86
UPF3A-201ENST00000351487 CFAP43Q8NDM7 1665 aa32.87■■■□□ 2.85
UPF3A-201ENST00000351487 URB2Q14146 1524 aaKnown RBP32.86■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms