Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.262e-20■□□□□ 9
RPS3P23396 COL22A1-203ENST00000435777 4355 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.462e-20■□□□□ 9
RPS3P23396 EEF2-203ENST00000596417 218 ntTSL 210□□□□□ -0.812e-20■□□□□ 9
RPS3P23396 SRSF7-210ENST00000452806 747 ntTSL 20.21□□□□□ -2.385e-7■□□□□ 9
RPS3P23396 ANP32A-211ENST00000561430 508 ntTSL 216.32■□□□□ 0.21e-7■□□□□ 9
RPS3P23396 ANP32A-201ENST00000267918 1084 ntTSL 314.6□□□□□ -0.071e-7■□□□□ 9
RPS3P23396 ANP32A-204ENST00000480858 352 ntTSL 1 (best)14.44□□□□□ -0.11e-7■□□□□ 9
RPS3P23396 ANP32A-206ENST00000483551 3711 ntTSL 58.61□□□□□ -1.031e-7■□□□□ 9
RPS3P23396 RPS8-207ENST00000485390 1115 ntTSL 1 (best)19.86■□□□□ 0.771e-38■□□□□ 9
RPS3P23396 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.671e-7■□□□□ 9
RPS3P23396 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.68■□□□□ 0.581e-7■□□□□ 9
RPS3P23396 NARF-220ENST00000582907 1454 ntTSL 513.77□□□□□ -0.211e-7■□□□□ 9
RPS3P23396 NAMPT-205ENST00000424768 1147 ntTSL 411.24□□□□□ -0.611e-7■□□□□ 9
RPS3P23396 NARF-226ENST00000584513 500 ntTSL 38.84□□□□□ -0.991e-7■□□□□ 9
RPS3P23396 MCM4-214ENST00000523853 354 ntTSL 28.52□□□□□ -1.051e-7■□□□□ 9
RPS3P23396 NAMPT-204ENST00000417537 300 ntTSL 47.87□□□□□ -1.151e-7■□□□□ 9
RPS3P23396 NAMPT-212ENST00000489732 1976 ntTSL 26.95□□□□□ -1.31e-7■□□□□ 9
RPS3P23396 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.531e-7■□□□□ 9
RPS3P23396 MCM4-204ENST00000518382 366 ntTSL 30.13□□□□□ -2.391e-7■□□□□ 9
RPS3P23396 DCAF7-204ENST00000582274 541 ntTSL 213.72□□□□□ -0.219e-7■□□□□ 9
RPS3P23396 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.06□□□□□ -1.69e-7■□□□□ 9
RPS3P23396 APP-207ENST00000415997 541 ntTSL 32.43□□□□□ -2.022e-8■□□□□ 9
RPS3P23396 FAT1-201ENST00000441802 14786 ntAPPRIS P2 TSL 5 BASIC8.68□□□□□ -1.021e-7■□□□□ 9
RPS3P23396 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC7.99□□□□□ -1.131e-7■□□□□ 9
RPS3P23396 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.221e-7■□□□□ 9
RPS3P23396 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.831e-7■□□□□ 9
RPS3P23396 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.28■□□□□ 0.681e-7■□□□□ 9
RPS3P23396 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.26■□□□□ 0.511e-7■□□□□ 9
RPS3P23396 TOP2A-205ENST00000581055 579 ntTSL 417.72■□□□□ 0.431e-7■□□□□ 9
RPS3P23396 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.54■□□□□ 0.41e-7■□□□□ 9
RPS3P23396 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.67■□□□□ 0.261e-7■□□□□ 9
RPS3P23396 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.231e-7■□□□□ 9
RPS3P23396 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.211e-7■□□□□ 9
RPS3P23396 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.21■□□□□ 0.191e-7■□□□□ 9
RPS3P23396 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.84■□□□□ 0.131e-7■□□□□ 9
RPS3P23396 BCL2L12-209ENST00000601168 416 ntTSL 215.73■□□□□ 0.111e-7■□□□□ 9
RPS3P23396 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.041e-7■□□□□ 9
RPS3P23396 BCL2L12-207ENST00000598979 893 ntTSL 314.23□□□□□ -0.131e-7■□□□□ 9
RPS3P23396 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC14.14□□□□□ -0.151e-7■□□□□ 9
RPS3P23396 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC14.06□□□□□ -0.161e-7■□□□□ 9
RPS3P23396 BCL2L12-213ENST00000619007 1630 ntTSL 1 (best) BASIC12.35□□□□□ -0.431e-7■□□□□ 9
RPS3P23396 TRA2B-212ENST00000480461 538 ntTSL 1 (best)12□□□□□ -0.491e-7■□□□□ 9
RPS3P23396 TRA2B-213ENST00000485530 839 ntTSL 212□□□□□ -0.491e-7■□□□□ 9
RPS3P23396 TRA2B-206ENST00000456380 1697 ntTSL 511.77□□□□□ -0.531e-7■□□□□ 9
RPS3P23396 TRA2B-208ENST00000465245 634 ntTSL 311.3□□□□□ -0.61e-7■□□□□ 9
RPS3P23396 EPB41-206ENST00000373798 5933 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.961e-7■□□□□ 9
RPS3P23396 EPB41-202ENST00000347529 2676 ntTSL 1 (best) BASIC8.39□□□□□ -1.071e-7■□□□□ 9
RPS3P23396 EPB41-213ENST00000636666 3642 ntTSL 56.45□□□□□ -1.381e-7■□□□□ 9
RPS3P23396 BUB1-210ENST00000478175 759 ntTSL 54.05□□□□□ -1.761e-7■□□□□ 9
RPS3P23396 SF3B1-210ENST00000482158 772 ntTSL 22.14□□□□□ -2.071e-7■□□□□ 9
RPS3P23396 AKAP1-217ENST00000576295 614 ntTSL 313.9□□□□□ -0.183e-8■□□□□ 9
RPS3P23396 VDAC1-204ENST00000425992 703 ntTSL 323■■□□□ 1.271e-14■□□□□ 9
RPS3P23396 DNAJA3-210ENST00000574895 558 ntTSL 421.78■■□□□ 1.085e-10■□□□□ 9
RPS3P23396 DNAJA3-204ENST00000570857 554 ntTSL 321.38■■□□□ 1.015e-10■□□□□ 9
RPS3P23396 DNAJA3-211ENST00000575106 837 ntTSL 421.38■■□□□ 1.015e-10■□□□□ 9
RPS3P23396 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.971e-14■□□□□ 9
RPS3P23396 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.72e-37■□□□□ 9
RPS3P23396 DNAJA3-213ENST00000576911 1413 ntTSL 218.17■□□□□ 0.55e-10■□□□□ 9
RPS3P23396 DNAJA3-207ENST00000572974 495 ntTSL 418.15■□□□□ 0.55e-10■□□□□ 9
RPS3P23396 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.93■□□□□ 0.465e-10■□□□□ 9
RPS3P23396 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.462e-37■□□□□ 9
RPS3P23396 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.452e-37■□□□□ 9
RPS3P23396 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.382e-37■□□□□ 9
RPS3P23396 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.322e-37■□□□□ 9
RPS3P23396 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.322e-37■□□□□ 9
RPS3P23396 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.225e-10■□□□□ 9
RPS3P23396 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.25e-10■□□□□ 9
RPS3P23396 TTC38-205ENST00000451998 582 ntTSL 215.19■□□□□ 0.025e-10■□□□□ 9
RPS3P23396 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.11e-14■□□□□ 9
RPS3P23396 VDAC1-207ENST00000492324 635 ntTSL 213.06□□□□□ -0.321e-14■□□□□ 9
RPS3P23396 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.332e-37■□□□□ 9
RPS3P23396 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.332e-37■□□□□ 9
RPS3P23396 VDAC1-202ENST00000395044 1807 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.551e-14■□□□□ 9
RPS3P23396 C6orf48-201ENST00000375633 586 ntAPPRIS P1 TSL 2 BASIC7.63□□□□□ -1.192e-37■□□□□ 9
RPS3P23396 CDH2-204ENST00000418492 740 ntTSL 57.34□□□□□ -1.233e-6■□□□□ 9
RPS3P23396 DNAJA3-208ENST00000573120 403 ntTSL 1 (best)5.53□□□□□ -1.525e-10■□□□□ 9
RPS3P23396 TFRC-213ENST00000482479 540 ntTSL 33.67□□□□□ -1.825e-10■□□□□ 9
RPS3P23396 SNORD48-201ENST00000364953 64 ntBASIC1.74□□□□□ -2.132e-37■□□□□ 9
RPS3P23396 EPHA2-202ENST00000461614 875 ntTSL 224.16■■□□□ 1.463e-8■□□□□ 9
RPS3P23396 HNRNPU-229ENST00000640440 871 ntTSL 313.9□□□□□ -0.185e-37■□□□□ 9
RPS3P23396 CAPZA1-202ENST00000466066 765 ntTSL 29.2□□□□□ -0.941e-13■□□□□ 8.9
RPS3P23396 RPL13A-206ENST00000476268 1623 ntTSL 317.94■□□□□ 0.461e-37■□□□□ 8.9
RPS3P23396 SEC23A-214ENST00000557437 575 ntTSL 414.5□□□□□ -0.097e-35■□□□□ 8.9
RPS3P23396 EIF4G1-232ENST00000466311 573 ntTSL 214.23□□□□□ -0.131e-6■□□□□ 8.9
RPS3P23396 EIF4G1-225ENST00000448284 677 ntTSL 512.94□□□□□ -0.341e-14■□□□□ 8.9
RPS3P23396 TNRC18-204ENST00000413081 925 ntTSL 317.72■□□□□ 0.434e-7■□□□□ 8.9
RPS3P23396 SAFB-207ENST00000589863 2708 ntTSL 216.53■□□□□ 0.241e-7■□□□□ 8.9
RPS3P23396 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.041e-7■□□□□ 8.9
RPS3P23396 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.051e-7■□□□□ 8.9
RPS3P23396 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.091e-7■□□□□ 8.9
RPS3P23396 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.271e-7■□□□□ 8.9
RPS3P23396 ATXN2L-213ENST00000564162 770 ntTSL 516.57■□□□□ 0.244e-16■□□□□ 8.9
RPS3P23396 ATXN2L-219ENST00000566007 471 ntTSL 38.73□□□□□ -1.014e-16■□□□□ 8.9
RPS3P23396 RPL13A-205ENST00000474171 521 ntTSL 210.78□□□□□ -0.682e-13■□□□□ 8.9
RPS3P23396 RPL13A-203ENST00000468655 407 ntTSL 29.25□□□□□ -0.932e-13■□□□□ 8.9
RPS3P23396 CYB5R3-207ENST00000466276 581 ntTSL 412.75□□□□□ -0.371e-7■□□□□ 8.9
RPS3P23396 NEU4-211ENST00000435855 2281 ntTSL 221.04■□□□□ 0.961e-7■□□□□ 8.9
RPS3P23396 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.951e-7■□□□□ 8.9
RPS3P23396 NEU4-214ENST00000476542 536 ntTSL 220.97■□□□□ 0.951e-7■□□□□ 8.9
RPS3P23396 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.691e-7■□□□□ 8.9
Retrieved 100 of 24,271 protein–RNA pairs in 341.7 ms