RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 AEBP2Q6ZN18 517 aaPredicted RBP27.4■■□□□ 1.98
SF3B1-210ENST00000482158 CHIC1Q5VXU3 224 aa27.07■■□□□ 1.92
SF3B1-210ENST00000482158 PHF23Q9BUL5 403 aaPredicted RBP23.93■■□□□ 1.42
SF3B1-210ENST00000482158 SENP3Q9H4L4 574 aaPredicted RBP23.05■■□□□ 1.28
SF3B1-210ENST00000482158 PLPPR3Q6T4P5 718 aa22.1■■□□□ 1.13
SF3B1-210ENST00000482158 FOXD1Q16676 465 aa21.43■■□□□ 1.02
SF3B1-210ENST00000482158 PPP6R1Q9UPN7 881 aa20.98■□□□□ 0.95
SF3B1-210ENST00000482158 ADRA2BP18089 450 aa20.94■□□□□ 0.94
SF3B1-210ENST00000482158 PIAS4Q8N2W9 510 aaPredicted RBP20.24■□□□□ 0.83
SF3B1-210ENST00000482158 POTEDQ86YR6 584 aa19.99■□□□□ 0.79
SF3B1-210ENST00000482158 KCNA4P22459 653 aa19.59■□□□□ 0.73
SF3B1-210ENST00000482158 PPP4R3CPQ6ZMV5 832 aa19.56■□□□□ 0.72
SF3B1-210ENST00000482158 MSH5O43196 834 aa19.5■□□□□ 0.71
SF3B1-210ENST00000482158 NCBP3Q53F19 620 aaKnown RBP19.07■□□□□ 0.64
SF3B1-210ENST00000482158 SCAF1Q9H7N4 1312 aaKnown RBP19.01■□□□□ 0.63
SF3B1-210ENST00000482158 NPM3O75607 178 aaKnown RBP18.91■□□□□ 0.62
SF3B1-210ENST00000482158 MAPK8IP2Q13387 824 aaPredicted RBP18.91■□□□□ 0.62
SF3B1-210ENST00000482158 CNKSR2Q8WXI2 1034 aa18.9■□□□□ 0.62
SF3B1-210ENST00000482158 SLC4A1APQ9BWU0 796 aaKnown RBP18.67■□□□□ 0.58
SF3B1-210ENST00000482158 EHMT2Q96KQ7 1210 aa18.6■□□□□ 0.57
SF3B1-210ENST00000482158 DMRT2Q9Y5R5 561 aa18.51■□□□□ 0.55
SF3B1-210ENST00000482158 RNF216Q9NWF9 866 aaPredicted RBP18.44■□□□□ 0.54
SF3B1-210ENST00000482158 DNAJC5BQ9UF47 199 aa18.31■□□□□ 0.52
SF3B1-210ENST00000482158 HOXD11P31277 338 aaPredicted RBP18.3■□□□□ 0.52
SF3B1-210ENST00000482158 CSRNP3Q8WYN3 585 aa18.28■□□□□ 0.52
SF3B1-210ENST00000482158 ZBTB22O15209 634 aa18.09■□□□□ 0.49
SF3B1-210ENST00000482158 FOXD4L1Q9NU39 408 aa17.86■□□□□ 0.45
SF3B1-210ENST00000482158 SLC4A2P04920 1241 aa17.8■□□□□ 0.44
SF3B1-210ENST00000482158 DCAF8L1A6NGE4 600 aa17.6■□□□□ 0.41
SF3B1-210ENST00000482158 MYCNP04198 464 aaPredicted RBP17.4■□□□□ 0.38
SF3B1-210ENST00000482158 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.35■□□□□ 0.374e-15■■□□□ 11.6
SF3B1-210ENST00000482158 U3KPZ7 1027 aaPredicted RBP17.21■□□□□ 0.35
SF3B1-210ENST00000482158 ATXN8OSP0DMR3 200 aa17.19■□□□□ 0.34
SF3B1-210ENST00000482158 ATF5Q9Y2D1 282 aaPredicted RBP17.02■□□□□ 0.32
SF3B1-210ENST00000482158 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.99■□□□□ 0.31
SF3B1-210ENST00000482158 HNRNPUL2Q1KMD3 747 aaKnown RBP16.99■□□□□ 0.31
SF3B1-210ENST00000482158 SAMD1Q6SPF0 538 aaPredicted RBP16.98■□□□□ 0.31
SF3B1-210ENST00000482158 RNF39Q9H2S5 420 aa16.82■□□□□ 0.28
SF3B1-210ENST00000482158 CACNB1Q02641 598 aaPredicted RBP16.71■□□□□ 0.27
SF3B1-210ENST00000482158 APLP2Q06481 763 aa16.68■□□□□ 0.26
SF3B1-210ENST00000482158 ZNF219Q9P2Y4 722 aaPredicted RBP16.63■□□□□ 0.25
SF3B1-210ENST00000482158 SPINK5Q9NQ38 1064 aaPredicted RBP16.62■□□□□ 0.25
SF3B1-210ENST00000482158 C1QBPQ07021 282 aaKnown RBP16.58■□□□□ 0.24
SF3B1-210ENST00000482158 TRHP20396 242 aaPredicted RBP16.47■□□□□ 0.23
SF3B1-210ENST00000482158 CAPN15O75808 1086 aa16.44■□□□□ 0.22
SF3B1-210ENST00000482158 FKBP8Q14318 412 aa16.43■□□□□ 0.22
SF3B1-210ENST00000482158 POLA2Q14181 598 aa16.33■□□□□ 0.2
SF3B1-210ENST00000482158 MKRN4PQ13434 485 aaPredicted RBP16.29■□□□□ 0.2
SF3B1-210ENST00000482158 ABCB7O75027 752 aa16.21■□□□□ 0.19
SF3B1-210ENST00000482158 DSG3P32926 999 aa16.15■□□□□ 0.18
SF3B1-210ENST00000482158 FBLN2P98095 1184 aa16.11■□□□□ 0.17
SF3B1-210ENST00000482158 SPDYE4A6NLX3 237 aa16.03■□□□□ 0.16
SF3B1-210ENST00000482158 ZBTB12Q9Y330 459 aaPredicted RBP16■□□□□ 0.15
SF3B1-210ENST00000482158 PROM2Q8N271 834 aa15.9■□□□□ 0.14
SF3B1-210ENST00000482158 OSCARQ8IYS5 282 aa15.76■□□□□ 0.11
SF3B1-210ENST00000482158 RTN4Q9NQC3 1192 aaKnown RBP15.69■□□□□ 0.1
SF3B1-210ENST00000482158 FBXO3Q9UK99 471 aa15.66■□□□□ 0.1
SF3B1-210ENST00000482158 SPDYE2BA6NHP3 402 aa15.65■□□□□ 0.1
SF3B1-210ENST00000482158 SPDYE6P0CI01 402 aa15.65■□□□□ 0.1
SF3B1-210ENST00000482158 SPDYE2Q495Y8 402 aa15.65■□□□□ 0.1
SF3B1-210ENST00000482158 ZNF692Q9BU19 519 aaPredicted RBP15.65■□□□□ 0.1
SF3B1-210ENST00000482158 SSUH2Q9Y2M2 353 aa15.63■□□□□ 0.09
SF3B1-210ENST00000482158 AMER1Q5JTC6 1135 aaPredicted RBP15.62■□□□□ 0.09
SF3B1-210ENST00000482158 VASPP50552 380 aaPredicted RBP15.51■□□□□ 0.07
SF3B1-210ENST00000482158 POTEHQ6S545 545 aa15.48■□□□□ 0.07
SF3B1-210ENST00000482158 PABPN1Q86U42 306 aaKnown RBP eCLIP15.48■□□□□ 0.07
SF3B1-210ENST00000482158 IFNLR1Q8IU57 520 aaPredicted RBP15.39■□□□□ 0.05
SF3B1-210ENST00000482158 STAG3Q9UJ98 1225 aa15.31■□□□□ 0.04
SF3B1-210ENST00000482158 RBM42Q9BTD8 480 aaKnown RBP15.26■□□□□ 0.03
SF3B1-210ENST00000482158 AKT1S1Q96B36 256 aa15.21■□□□□ 0.03
SF3B1-210ENST00000482158 MIER1Q8N108 512 aa15.12■□□□□ 0.01
SF3B1-210ENST00000482158 PLCD3Q8N3E9 789 aa15.12■□□□□ 0.01
SF3B1-210ENST00000482158 REM2Q8IYK8 340 aaPredicted RBP15.11■□□□□ 0.01
SF3B1-210ENST00000482158 KLHL34Q8N239 644 aa15.08■□□□□ 0
SF3B1-210ENST00000482158 SPDYE1Q8NFV5 336 aaPredicted RBP15.08■□□□□ 0
SF3B1-210ENST00000482158 SPOCK2Q92563 424 aa15.06■□□□□ 0
SF3B1-210ENST00000482158 PKD2Q13563 968 aa15.04■□□□□ -0
SF3B1-210ENST00000482158 CLEC11AQ9Y240 323 aa14.99□□□□□ -0.01
SF3B1-210ENST00000482158 PITPNM1O00562 1244 aa14.94□□□□□ -0.02
SF3B1-210ENST00000482158 PLEKHG5O94827 1062 aa14.91□□□□□ -0.02
SF3B1-210ENST00000482158 PRR29P0C7W0 189 aa14.91□□□□□ -0.02
SF3B1-210ENST00000482158 CREBZFQ9NS37 354 aa14.9□□□□□ -0.02
SF3B1-210ENST00000482158 ZBTB47Q9UFB7 747 aaPredicted RBP14.89□□□□□ -0.03
SF3B1-210ENST00000482158 MNX1P50219 401 aaPredicted RBP14.84□□□□□ -0.03
SF3B1-210ENST00000482158 NUBP1P53384 320 aa14.78□□□□□ -0.04
SF3B1-210ENST00000482158 ECM2O94769 699 aaPredicted RBP14.77□□□□□ -0.05
SF3B1-210ENST00000482158 SLC24A1O60721 1099 aa14.75□□□□□ -0.05
SF3B1-210ENST00000482158 CIZ1Q9ULV3 898 aaPredicted RBP14.74□□□□□ -0.05
SF3B1-210ENST00000482158 RGL2O15211 777 aa14.69□□□□□ -0.06
SF3B1-210ENST00000482158 DCAF8L2P0C7V8 631 aa14.67□□□□□ -0.06
SF3B1-210ENST00000482158 CHADLQ6NUI6 762 aa14.65□□□□□ -0.06
SF3B1-210ENST00000482158 GSE1Q14687 1217 aa14.63□□□□□ -0.07
SF3B1-210ENST00000482158 RASEFQ8IZ41 740 aa14.62□□□□□ -0.07
SF3B1-210ENST00000482158 FXR2P51116 673 aaKnown RBP eCLIP14.59□□□□□ -0.073e-10■□□□□ 11.1
SF3B1-210ENST00000482158 DCAF8Q5TAQ9 597 aa14.59□□□□□ -0.07
SF3B1-210ENST00000482158 TRIM41Q8WV44 630 aa14.58□□□□□ -0.08
SF3B1-210ENST00000482158 NPM1P06748 294 aaKnown RBP eCLIP14.57□□□□□ -0.08
SF3B1-210ENST00000482158 FAM212AQ96EL1 285 aa14.55□□□□□ -0.08
SF3B1-210ENST00000482158 PRKAR2AP13861 404 aaKnown RBP14.53□□□□□ -0.08
SF3B1-210ENST00000482158 CHRDL2Q6WN34 429 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms