RNA–Protein interactions for RNA: ENST00000465245.1

TRA2B-208, Transcript of transformer 2 beta homolog, humanhuman

TSL 3

Gene TRA2B, Length 634 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-208ENST00000465245 NISCHQ9Y2I1 1504 aa30.72■■■□□ 2.51
TRA2B-208ENST00000465245 ABCC9O60706 1549 aa28.05■■■□□ 2.08
TRA2B-208ENST00000465245 CCDC180Q9P1Z9 1646 aa27.79■■■□□ 2.04
TRA2B-208ENST00000465245 RB1CC1Q8TDY2 1594 aa26.58■■□□□ 1.85
TRA2B-208ENST00000465245 DNAJC5BQ9UF47 199 aa26.54■■□□□ 1.84
TRA2B-208ENST00000465245 NACADO15069 1562 aa26.3■■□□□ 1.8
TRA2B-208ENST00000465245 UNC13AQ9UPW8 1703 aa26.06■■□□□ 1.76
TRA2B-208ENST00000465245 DCAF8L2P0C7V8 631 aa26.03■■□□□ 1.76
TRA2B-208ENST00000465245 PABPN1Q86U42 306 aaKnown RBP eCLIP26.01■■□□□ 1.75
TRA2B-208ENST00000465245 MYO15BQ96JP2 1530 aa25.81■■□□□ 1.72
TRA2B-208ENST00000465245 BICRAQ9NZM4 1560 aa25.81■■□□□ 1.72
TRA2B-208ENST00000465245 SHROOM4Q9ULL8 1493 aa25.43■■□□□ 1.66
TRA2B-208ENST00000465245 ZCCHC6Q5VYS8 1495 aaKnown RBP25.4■■□□□ 1.66
TRA2B-208ENST00000465245 CC2D2AQ9P2K1 1620 aa25.35■■□□□ 1.65
TRA2B-208ENST00000465245 DCAF1Q9Y4B6 1507 aa25.35■■□□□ 1.65
TRA2B-208ENST00000465245 CECR2Q9BXF3 1484 aa25.31■■□□□ 1.64
TRA2B-208ENST00000465245 SCRIBQ14160 1630 aa25.3■■□□□ 1.64
TRA2B-208ENST00000465245 EIF4G1Q04637 1599 aaKnown RBP25.22■■□□□ 1.63
TRA2B-208ENST00000465245 DNAJC5Q9H3Z4 198 aa24.63■■□□□ 1.53
TRA2B-208ENST00000465245 CUX2O14529 1486 aa24.32■■□□□ 1.48
TRA2B-208ENST00000465245 ERCC6Q03468 1493 aa24.27■■□□□ 1.48
TRA2B-208ENST00000465245 NCAPD3P42695 1498 aa24.24■■□□□ 1.47
TRA2B-208ENST00000465245 ATAD2BQ9ULI0 1458 aa24.13■■□□□ 1.45
TRA2B-208ENST00000465245 SMARCA2P51531 1590 aa24.09■■□□□ 1.45
TRA2B-208ENST00000465245 HMGXB3Q12766 1538 aa24.09■■□□□ 1.45
TRA2B-208ENST00000465245 SMARCA4P51532 1647 aa24.08■■□□□ 1.45
TRA2B-208ENST00000465245 NESP48681 1621 aa24■■□□□ 1.43
TRA2B-208ENST00000465245 BAZ1BQ9UIG0 1483 aaKnown RBP23.91■■□□□ 1.42
TRA2B-208ENST00000465245 BAZ1AQ9NRL2 1556 aaPredicted RBP23.89■■□□□ 1.41
TRA2B-208ENST00000465245 THOC2Q8NI27 1593 aaKnown RBP23.88■■□□□ 1.41
TRA2B-208ENST00000465245 PEG3Q9GZU2 1588 aa23.82■■□□□ 1.4
TRA2B-208ENST00000465245 LAMC3Q9Y6N6 1575 aa23.82■■□□□ 1.4
TRA2B-208ENST00000465245 KIF21AQ7Z4S6 1674 aa23.77■■□□□ 1.4
TRA2B-208ENST00000465245 MROH2BQ7Z745 1585 aa23.67■■□□□ 1.38
TRA2B-208ENST00000465245 PDS5BQ9NTI5 1447 aa23.65■■□□□ 1.38
TRA2B-208ENST00000465245 CADPSQ9ULU8 1353 aa23.48■■□□□ 1.35
TRA2B-208ENST00000465245 MRC2Q9UBG0 1479 aa23.48■■□□□ 1.35
TRA2B-208ENST00000465245 WDR62O43379 1518 aa23.45■■□□□ 1.34
TRA2B-208ENST00000465245 TRIM41Q8WV44 630 aa23.45■■□□□ 1.34
TRA2B-208ENST00000465245 WIZO95785 1651 aa23.41■■□□□ 1.34
TRA2B-208ENST00000465245 CEP164Q9UPV0 1460 aa23.33■■□□□ 1.33
TRA2B-208ENST00000465245 FANCD2Q9BXW9 1451 aa23.25■■□□□ 1.31
TRA2B-208ENST00000465245 CFTRP13569 1480 aa23.17■■□□□ 1.3
TRA2B-208ENST00000465245 OSCARQ8IYS5 282 aa23.1■■□□□ 1.29
TRA2B-208ENST00000465245 URB2Q14146 1524 aaKnown RBP23.09■■□□□ 1.29
TRA2B-208ENST00000465245 TOP2AP11388 1531 aaKnown RBP23.08■■□□□ 1.28
TRA2B-208ENST00000465245 PRDM2Q13029 1718 aa23.05■■□□□ 1.28
TRA2B-208ENST00000465245 RSF1Q96T23 1441 aaPredicted RBP23.02■■□□□ 1.28
TRA2B-208ENST00000465245 RIMBP3CA6NJZ7 1639 aa22.94■■□□□ 1.26
TRA2B-208ENST00000465245 RIMBP3BA6NNM3 1639 aa22.94■■□□□ 1.26
TRA2B-208ENST00000465245 RIMBP3Q9UFD9 1639 aa22.94■■□□□ 1.26
TRA2B-208ENST00000465245 IFT140Q96RY7 1462 aa22.85■■□□□ 1.25
TRA2B-208ENST00000465245 ZNF608Q9ULD9 1512 aaPredicted RBP22.85■■□□□ 1.25
TRA2B-208ENST00000465245 ARHGEF11O15085 1522 aa22.8■■□□□ 1.24
TRA2B-208ENST00000465245 TOPBP1Q92547 1522 aa22.78■■□□□ 1.24
TRA2B-208ENST00000465245 CCDC88BA6NC98 1476 aa22.78■■□□□ 1.24
TRA2B-208ENST00000465245 EIF4G3O43432 1585 aaKnown RBP22.77■■□□□ 1.24
TRA2B-208ENST00000465245 ABCC8Q09428 1581 aa22.7■■□□□ 1.22
TRA2B-208ENST00000465245 DNMBPQ6XZF7 1577 aa22.7■■□□□ 1.22
TRA2B-208ENST00000465245 CHD1O14646 1710 aa22.7■■□□□ 1.22
TRA2B-208ENST00000465245 TARBP1Q13395 1621 aaKnown RBP22.63■■□□□ 1.21
TRA2B-208ENST00000465245 CYB5RLQ6IPT4 315 aa22.59■■□□□ 1.21
TRA2B-208ENST00000465245 AQRO60306 1485 aaKnown RBP eCLIP22.59■■□□□ 1.211e-10■■■■□ 22.2
TRA2B-208ENST00000465245 ARAP1Q96P48 1450 aa22.55■■□□□ 1.2
TRA2B-208ENST00000465245 POLA1P09884 1462 aaPredicted RBP22.53■■□□□ 1.2
TRA2B-208ENST00000465245 FBLN2P98095 1184 aa22.51■■□□□ 1.19
TRA2B-208ENST00000465245 TRHP20396 242 aaPredicted RBP22.48■■□□□ 1.19
TRA2B-208ENST00000465245 RAD54L2Q9Y4B4 1467 aa22.43■■□□□ 1.18
TRA2B-208ENST00000465245 WDR97A6NE52 1622 aa22.39■■□□□ 1.18
TRA2B-208ENST00000465245 SNAPC4Q5SXM2 1469 aa22.39■■□□□ 1.17
TRA2B-208ENST00000465245 SOGA1O94964 1423 aa22.39■■□□□ 1.17
TRA2B-208ENST00000465245 TDRD9Q8NDG6 1382 aaKnown RBP22.38■■□□□ 1.17
TRA2B-208ENST00000465245 CLASP1Q7Z460 1538 aa22.36■■□□□ 1.17
TRA2B-208ENST00000465245 FGD5Q6ZNL6 1462 aa22.34■■□□□ 1.17
TRA2B-208ENST00000465245 SYNJ1O43426 1573 aa22.34■■□□□ 1.17
TRA2B-208ENST00000465245 MAGI1Q96QZ7 1491 aaPredicted RBP22.31■■□□□ 1.16
TRA2B-208ENST00000465245 CHMP7Q8WUX9 453 aaPredicted RBP22.28■■□□□ 1.16
TRA2B-208ENST00000465245 CUX1P39880 1505 aa22.26■■□□□ 1.15
TRA2B-208ENST00000465245 GRIN2BQ13224 1484 aa22.26■■□□□ 1.15
TRA2B-208ENST00000465245 PBRM1Q86U86 1689 aa22.24■■□□□ 1.15
TRA2B-208ENST00000465245 SYNJ2O15056 1496 aa22.23■■□□□ 1.15
TRA2B-208ENST00000465245 GAPVD1Q14C86 1478 aa22.13■■□□□ 1.13
TRA2B-208ENST00000465245 ABCA5Q8WWZ7 1642 aa22.09■■□□□ 1.13
TRA2B-208ENST00000465245 AEBP2Q6ZN18 517 aaPredicted RBP22.08■■□□□ 1.13
TRA2B-208ENST00000465245 ABCA10Q8WWZ4 1543 aa22.06■■□□□ 1.12
TRA2B-208ENST00000465245 ERCC6L2Q5T890 1561 aa21.99■■□□□ 1.11
TRA2B-208ENST00000465245 GRIN2AQ12879 1464 aa21.98■■□□□ 1.11
TRA2B-208ENST00000465245 ADAMTS12P58397 1594 aa21.96■■□□□ 1.11
TRA2B-208ENST00000465245 CEP170Q5SW79 1584 aa21.94■■□□□ 1.1
TRA2B-208ENST00000465245 NUP160Q12769 1436 aa21.89■■□□□ 1.1
TRA2B-208ENST00000465245 SHROOM2Q13796 1616 aa21.89■■□□□ 1.09
TRA2B-208ENST00000465245 WRNQ14191 1432 aaPredicted RBP eCLIP21.89■■□□□ 1.09
TRA2B-208ENST00000465245 BIVM-ERCC5R4GMW8 1640 aa21.87■■□□□ 1.09
TRA2B-208ENST00000465245 TOP2BQ02880 1626 aa21.84■■□□□ 1.09
TRA2B-208ENST00000465245 KIF13AQ9H1H9 1805 aa21.83■■□□□ 1.09
TRA2B-208ENST00000465245 FHAD1B1AJZ9 1412 aa21.83■■□□□ 1.09
TRA2B-208ENST00000465245 ERICH3Q5RHP9 1530 aa21.79■■□□□ 1.08
TRA2B-208ENST00000465245 SUPT5HO00267 1087 aaKnown RBP21.74■■□□□ 1.07
TRA2B-208ENST00000465245 PRG4Q92954 1404 aaPredicted RBP21.72■■□□□ 1.07
TRA2B-208ENST00000465245 RUSC2Q8N2Y8 1516 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms