RNA–Protein interactions for RNA: ENST00000588852.1

SAFB-205, Transcript of scaffold attachment factor B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SAFB, Length 2,842 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAFB-205ENST00000588852 NISCHQ9Y2I1 1504 aa30.92■■■□□ 2.54
SAFB-205ENST00000588852 SHROOM4Q9ULL8 1493 aa27.03■■□□□ 1.92
SAFB-205ENST00000588852 SUPT5HO00267 1087 aaKnown RBP26.58■■□□□ 1.85
SAFB-205ENST00000588852 ZCCHC6Q5VYS8 1495 aaKnown RBP26.15■■□□□ 1.78
SAFB-205ENST00000588852 DCAF8L2P0C7V8 631 aa26.14■■□□□ 1.78
SAFB-205ENST00000588852 CCDC180Q9P1Z9 1646 aa25.92■■□□□ 1.74
SAFB-205ENST00000588852 MYO15BQ96JP2 1530 aa25.76■■□□□ 1.72
SAFB-205ENST00000588852 CHIC1Q5VXU3 224 aa25.75■■□□□ 1.71
SAFB-205ENST00000588852 PCGF6Q9BYE7 350 aa25.34■■□□□ 1.65
SAFB-205ENST00000588852 HRCP23327 699 aa25.27■■□□□ 1.64
SAFB-205ENST00000588852 LOC105371045A0A1W2PR82 267 aa25.23■■□□□ 1.63
SAFB-205ENST00000588852 DCAF1Q9Y4B6 1507 aa25.1■■□□□ 1.61
SAFB-205ENST00000588852 PPARGC1BQ86YN6 1023 aaKnown RBP25.05■■□□□ 1.6
SAFB-205ENST00000588852 SCRIBQ14160 1630 aa24.74■■□□□ 1.55
SAFB-205ENST00000588852 ABCC9O60706 1549 aa24.69■■□□□ 1.54
SAFB-205ENST00000588852 RSF1Q96T23 1441 aaPredicted RBP24.67■■□□□ 1.54
SAFB-205ENST00000588852 FAM9AQ8IZU1 332 aaPredicted RBP24.64■■□□□ 1.54
SAFB-205ENST00000588852 EHMT2Q96KQ7 1210 aa24.64■■□□□ 1.53
SAFB-205ENST00000588852 TRIM41Q8WV44 630 aa24.57■■□□□ 1.52
SAFB-205ENST00000588852 TRIM26Q12899 539 aaPredicted RBP24.56■■□□□ 1.52
SAFB-205ENST00000588852 RB1CC1Q8TDY2 1594 aa24.47■■□□□ 1.51
SAFB-205ENST00000588852 CECR2Q9BXF3 1484 aa24.34■■□□□ 1.49
SAFB-205ENST00000588852 MROH2BQ7Z745 1585 aa24.19■■□□□ 1.46
SAFB-205ENST00000588852 WIZO95785 1651 aa24.08■■□□□ 1.44
SAFB-205ENST00000588852 NACADO15069 1562 aa24.01■■□□□ 1.43
SAFB-205ENST00000588852 ZEB1P37275 1124 aaPredicted RBP23.92■■□□□ 1.42
SAFB-205ENST00000588852 TTBK1Q5TCY1 1321 aaPredicted RBP23.84■■□□□ 1.41
SAFB-205ENST00000588852 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.8■■□□□ 1.4
SAFB-205ENST00000588852 BAZ1AQ9NRL2 1556 aaPredicted RBP23.73■■□□□ 1.39
SAFB-205ENST00000588852 ABCC8Q09428 1581 aa23.71■■□□□ 1.39
SAFB-205ENST00000588852 CCDC88BA6NC98 1476 aa23.65■■□□□ 1.38
SAFB-205ENST00000588852 EIF4G1Q04637 1599 aaKnown RBP23.64■■□□□ 1.38
SAFB-205ENST00000588852 CCER1Q8TC90 406 aaPredicted RBP23.62■■□□□ 1.37
SAFB-205ENST00000588852 SCAF1Q9H7N4 1312 aaKnown RBP23.56■■□□□ 1.36
SAFB-205ENST00000588852 SOGA1O94964 1423 aa23.55■■□□□ 1.36
SAFB-205ENST00000588852 PABPN1Q86U42 306 aaKnown RBP eCLIP23.52■■□□□ 1.362e-11■□□□□ 8.5
SAFB-205ENST00000588852 TOP2AP11388 1531 aaKnown RBP23.5■■□□□ 1.35
SAFB-205ENST00000588852 SMARCA4P51532 1647 aa23.48■■□□□ 1.35
SAFB-205ENST00000588852 RUSC2Q8N2Y8 1516 aa23.47■■□□□ 1.35
SAFB-205ENST00000588852 SMARCA2P51531 1590 aa23.46■■□□□ 1.35
SAFB-205ENST00000588852 UBTFP17480 764 aaKnown RBP23.43■■□□□ 1.34
SAFB-205ENST00000588852 CEP162Q5TB80 1403 aa23.43■■□□□ 1.34
SAFB-205ENST00000588852 UNC13AQ9UPW8 1703 aa23.39■■□□□ 1.33
SAFB-205ENST00000588852 CSRNP3Q8WYN3 585 aa23.36■■□□□ 1.33
SAFB-205ENST00000588852 WRNQ14191 1432 aaPredicted RBP eCLIP23.27■■□□□ 1.32
SAFB-205ENST00000588852 TNIKQ9UKE5 1360 aa23.27■■□□□ 1.32
SAFB-205ENST00000588852 DIEXFQ68CQ4 756 aaKnown RBP23.24■■□□□ 1.31
SAFB-205ENST00000588852 NEUROD1Q13562 356 aa23.23■■□□□ 1.31
SAFB-205ENST00000588852 RANGAP1P46060 587 aaPredicted RBP23.2■■□□□ 1.3
SAFB-205ENST00000588852 ACIN1Q9UKV3 1341 aaKnown RBP23.14■■□□□ 1.29
SAFB-205ENST00000588852 HNRNPUL2Q1KMD3 747 aaKnown RBP23.13■■□□□ 1.29
SAFB-205ENST00000588852 BICRAQ9NZM4 1560 aa23.11■■□□□ 1.29
SAFB-205ENST00000588852 PELP1Q8IZL8 1130 aaKnown RBP23.09■■□□□ 1.29
SAFB-205ENST00000588852 GOLGA3Q08378 1498 aa23.08■■□□□ 1.29
SAFB-205ENST00000588852 EEA1Q15075 1411 aa23.07■■□□□ 1.28
SAFB-205ENST00000588852 SYNJ1O43426 1573 aa23.04■■□□□ 1.28
SAFB-205ENST00000588852 GTF3C3Q9Y5Q9 886 aa23■■□□□ 1.27
SAFB-205ENST00000588852 ZNF316A6NFI3 1004 aaPredicted RBP22.94■■□□□ 1.26
SAFB-205ENST00000588852 CLIP1P30622 1438 aa22.93■■□□□ 1.26
SAFB-205ENST00000588852 YTHDC1Q96MU7 727 aaKnown RBP22.92■■□□□ 1.26
SAFB-205ENST00000588852 CEP164Q9UPV0 1460 aa22.91■■□□□ 1.26
SAFB-205ENST00000588852 RAPGEF2Q9Y4G8 1499 aa22.9■■□□□ 1.26
SAFB-205ENST00000588852 ATAD2BQ9ULI0 1458 aa22.9■■□□□ 1.26
SAFB-205ENST00000588852 PEG3Q9GZU2 1588 aa22.87■■□□□ 1.25
SAFB-205ENST00000588852 CENPBP07199 599 aaPredicted RBP22.86■■□□□ 1.25
SAFB-205ENST00000588852 BAZ1BQ9UIG0 1483 aaKnown RBP22.85■■□□□ 1.25
SAFB-205ENST00000588852 APLP2Q06481 763 aa22.82■■□□□ 1.24
SAFB-205ENST00000588852 MIER1Q8N108 512 aa22.8■■□□□ 1.24
SAFB-205ENST00000588852 KIF21BO75037 1637 aa22.8■■□□□ 1.24
SAFB-205ENST00000588852 VPS8Q8N3P4 1428 aa22.79■■□□□ 1.24
SAFB-205ENST00000588852 KANK4Q5T7N3 995 aaPredicted RBP22.66■■□□□ 1.22
SAFB-205ENST00000588852 TOP2BQ02880 1626 aa22.6■■□□□ 1.21
SAFB-205ENST00000588852 ARAP1Q96P48 1450 aa22.52■■□□□ 1.2
SAFB-205ENST00000588852 ITGAEP38570 1179 aa22.51■■□□□ 1.19
SAFB-205ENST00000588852 PRXQ9BXM0 1461 aa22.49■■□□□ 1.19
SAFB-205ENST00000588852 DHX57Q6P158 1386 aaKnown RBP22.47■■□□□ 1.19
SAFB-205ENST00000588852 CUX1P39880 1505 aa22.46■■□□□ 1.19
SAFB-205ENST00000588852 BIVM-ERCC5R4GMW8 1640 aa22.44■■□□□ 1.18
SAFB-205ENST00000588852 ERICH3Q5RHP9 1530 aa22.37■■□□□ 1.17
SAFB-205ENST00000588852 KIF27Q86VH2 1401 aa22.36■■□□□ 1.17
SAFB-205ENST00000588852 NCAPD3P42695 1498 aa22.32■■□□□ 1.16
SAFB-205ENST00000588852 ARHGAP35Q9NRY4 1499 aa22.3■■□□□ 1.16
SAFB-205ENST00000588852 RRBP1Q9P2E9 1410 aaKnown RBP22.25■■□□□ 1.15
SAFB-205ENST00000588852 CCNB3Q8WWL7 1395 aa22.25■■□□□ 1.15
SAFB-205ENST00000588852 CFTRP13569 1480 aa22.25■■□□□ 1.15
SAFB-205ENST00000588852 P3H3Q8IVL6 736 aa22.24■■□□□ 1.15
SAFB-205ENST00000588852 CLSPNQ9HAW4 1339 aa22.23■■□□□ 1.15
SAFB-205ENST00000588852 HMGXB3Q12766 1538 aa22.23■■□□□ 1.15
SAFB-205ENST00000588852 CUX2O14529 1486 aa22.2■■□□□ 1.14
SAFB-205ENST00000588852 IGF1RP08069 1367 aa22.2■■□□□ 1.14
SAFB-205ENST00000588852 ATP1B4Q9UN42 357 aaPredicted RBP22.19■■□□□ 1.14
SAFB-205ENST00000588852 KCNH8Q96L42 1107 aa22.18■■□□□ 1.14
SAFB-205ENST00000588852 RAB3GAP2Q9H2M9 1393 aa22.15■■□□□ 1.14
SAFB-205ENST00000588852 FAM50AQ14320 339 aaKnown RBP22.12■■□□□ 1.13
SAFB-205ENST00000588852 SIN3AQ96ST3 1273 aa22.11■■□□□ 1.13
SAFB-205ENST00000588852 CARMIL1Q5VZK9 1371 aa22.09■■□□□ 1.13
SAFB-205ENST00000588852 PHLDB1Q86UU1 1377 aa22.07■■□□□ 1.12
SAFB-205ENST00000588852 HIRIP3Q9BW71 556 aaPredicted RBP22.04■■□□□ 1.12
SAFB-205ENST00000588852 SUPT16HQ9Y5B9 1047 aaKnown RBP22.04■■□□□ 1.12
SAFB-205ENST00000588852 FGD5Q6ZNL6 1462 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms