Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC27.59■■■□□ 2.01
DDX4Q9NQI0 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC27.59■■■□□ 2.01
DDX4Q9NQI0 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC27.59■■■□□ 2.01
DDX4Q9NQI0 CEBPA-AS1-201ENST00000592982 2198 ntBASIC27.59■■■□□ 2.01
DDX4Q9NQI0 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
DDX4Q9NQI0 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
DDX4Q9NQI0 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC27.58■■■□□ 2.01
DDX4Q9NQI0 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
DDX4Q9NQI0 MIR6089-201ENST00000616698 64 ntBASIC27.58■■■□□ 2.01
DDX4Q9NQI0 AC145676.1-201ENST00000514988 2004 ntBASIC27.58■■■□□ 2.01
DDX4Q9NQI0 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC27.57■■■□□ 2
DDX4Q9NQI0 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC27.57■■■□□ 2
DDX4Q9NQI0 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC27.57■■■□□ 2
DDX4Q9NQI0 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
DDX4Q9NQI0 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC27.57■■■□□ 2
DDX4Q9NQI0 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC27.57■■■□□ 2
DDX4Q9NQI0 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC27.56■■■□□ 2
DDX4Q9NQI0 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC27.56■■■□□ 2
DDX4Q9NQI0 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
DDX4Q9NQI0 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
DDX4Q9NQI0 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC27.56■■■□□ 2
DDX4Q9NQI0 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
DDX4Q9NQI0 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC27.55■■■□□ 2
DDX4Q9NQI0 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC27.55■■■□□ 2
DDX4Q9NQI0 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
DDX4Q9NQI0 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
DDX4Q9NQI0 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
DDX4Q9NQI0 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
DDX4Q9NQI0 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC27.54■■■□□ 2
DDX4Q9NQI0 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC27.54■■■□□ 2
DDX4Q9NQI0 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC27.54■■■□□ 2
DDX4Q9NQI0 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC27.54■■■□□ 2
DDX4Q9NQI0 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC27.53■■■□□ 2
DDX4Q9NQI0 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC27.53■■■□□ 2
DDX4Q9NQI0 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC27.53■■■□□ 2
DDX4Q9NQI0 AC133561.4-201ENST00000566112 224 ntBASIC27.53■■■□□ 2
DDX4Q9NQI0 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC27.53■■■□□ 2
DDX4Q9NQI0 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC27.53■■■□□ 2
DDX4Q9NQI0 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC27.52■■■□□ 2
DDX4Q9NQI0 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC27.52■■■□□ 2
DDX4Q9NQI0 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC27.52■■■□□ 2
DDX4Q9NQI0 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
DDX4Q9NQI0 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC27.52■■■□□ 2
DDX4Q9NQI0 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
DDX4Q9NQI0 UNC93B3-201ENST00000308076 687 ntBASIC27.51■■□□□ 1.99
DDX4Q9NQI0 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC27.51■■□□□ 1.99
DDX4Q9NQI0 AC106739.1-201ENST00000617035 715 ntBASIC27.51■■□□□ 1.99
DDX4Q9NQI0 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
DDX4Q9NQI0 LSR-205ENST00000427250 1606 ntTSL 2 BASIC27.51■■□□□ 1.99
DDX4Q9NQI0 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
DDX4Q9NQI0 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC27.51■■□□□ 1.99
DDX4Q9NQI0 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC27.5■■□□□ 1.99
DDX4Q9NQI0 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
DDX4Q9NQI0 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC27.5■■□□□ 1.99
DDX4Q9NQI0 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC27.5■■□□□ 1.99
DDX4Q9NQI0 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC27.5■■□□□ 1.99
DDX4Q9NQI0 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC27.5■■□□□ 1.99
DDX4Q9NQI0 PBX2P1-201ENST00000493219 1291 ntBASIC27.5■■□□□ 1.99
DDX4Q9NQI0 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
DDX4Q9NQI0 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC27.5■■□□□ 1.99
DDX4Q9NQI0 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
DDX4Q9NQI0 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
DDX4Q9NQI0 AC005703.6-201ENST00000623265 1329 ntBASIC27.49■■□□□ 1.99
DDX4Q9NQI0 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
DDX4Q9NQI0 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
DDX4Q9NQI0 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
DDX4Q9NQI0 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC27.48■■□□□ 1.99
DDX4Q9NQI0 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
DDX4Q9NQI0 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
DDX4Q9NQI0 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC27.48■■□□□ 1.99
DDX4Q9NQI0 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC27.47■■□□□ 1.99
DDX4Q9NQI0 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
DDX4Q9NQI0 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
DDX4Q9NQI0 AL031432.3-201ENST00000607698 485 ntBASIC27.47■■□□□ 1.99
DDX4Q9NQI0 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC27.47■■□□□ 1.99
DDX4Q9NQI0 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
DDX4Q9NQI0 REST-206ENST00000612429 1376 ntTSL 5 BASIC27.47■■□□□ 1.99
DDX4Q9NQI0 REST-207ENST00000616975 1370 ntTSL 5 BASIC27.47■■□□□ 1.99
DDX4Q9NQI0 GATM-206ENST00000558336 1522 ntTSL 2 BASIC27.46■■□□□ 1.99
DDX4Q9NQI0 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC27.46■■□□□ 1.99
DDX4Q9NQI0 SRD5A1P1-201ENST00000442297 786 ntBASIC27.46■■□□□ 1.99
DDX4Q9NQI0 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
DDX4Q9NQI0 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
DDX4Q9NQI0 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
DDX4Q9NQI0 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
DDX4Q9NQI0 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC27.45■■□□□ 1.98
DDX4Q9NQI0 AL136162.1-201ENST00000607711 1078 ntBASIC27.45■■□□□ 1.98
DDX4Q9NQI0 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
DDX4Q9NQI0 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
DDX4Q9NQI0 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC27.44■■□□□ 1.98
DDX4Q9NQI0 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC27.44■■□□□ 1.98
DDX4Q9NQI0 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
DDX4Q9NQI0 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC27.43■■□□□ 1.98
DDX4Q9NQI0 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC27.43■■□□□ 1.98
DDX4Q9NQI0 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC27.43■■□□□ 1.98
DDX4Q9NQI0 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
DDX4Q9NQI0 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
DDX4Q9NQI0 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
DDX4Q9NQI0 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
DDX4Q9NQI0 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC27.42■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms