Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.24■□□□□ 0.99
ZNF540Q8NDQ6 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF540Q8NDQ6 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF540Q8NDQ6 AC060814.1-201ENST00000554326 538 ntBASIC21.24■□□□□ 0.99
ZNF540Q8NDQ6 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.24■□□□□ 0.99
ZNF540Q8NDQ6 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF540Q8NDQ6 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
ZNF540Q8NDQ6 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF540Q8NDQ6 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF540Q8NDQ6 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF540Q8NDQ6 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF540Q8NDQ6 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
ZNF540Q8NDQ6 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
ZNF540Q8NDQ6 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.23■□□□□ 0.99
ZNF540Q8NDQ6 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF540Q8NDQ6 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.23■□□□□ 0.99
ZNF540Q8NDQ6 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.23■□□□□ 0.99
ZNF540Q8NDQ6 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
ZNF540Q8NDQ6 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF540Q8NDQ6 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF540Q8NDQ6 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF540Q8NDQ6 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF540Q8NDQ6 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF540Q8NDQ6 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF540Q8NDQ6 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF540Q8NDQ6 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF540Q8NDQ6 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.22■□□□□ 0.99
ZNF540Q8NDQ6 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF540Q8NDQ6 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF540Q8NDQ6 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF540Q8NDQ6 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF540Q8NDQ6 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
ZNF540Q8NDQ6 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.21■□□□□ 0.99
ZNF540Q8NDQ6 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.21■□□□□ 0.99
ZNF540Q8NDQ6 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF540Q8NDQ6 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.21■□□□□ 0.99
ZNF540Q8NDQ6 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF540Q8NDQ6 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF540Q8NDQ6 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF540Q8NDQ6 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF540Q8NDQ6 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF540Q8NDQ6 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF540Q8NDQ6 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF540Q8NDQ6 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF540Q8NDQ6 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF540Q8NDQ6 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF540Q8NDQ6 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
ZNF540Q8NDQ6 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF540Q8NDQ6 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF540Q8NDQ6 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF540Q8NDQ6 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.19■□□□□ 0.98
ZNF540Q8NDQ6 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF540Q8NDQ6 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
ZNF540Q8NDQ6 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF540Q8NDQ6 MIR6089-201ENST00000616698 64 ntBASIC21.19■□□□□ 0.98
ZNF540Q8NDQ6 AC012354.3-201ENST00000623734 483 ntBASIC21.19■□□□□ 0.98
ZNF540Q8NDQ6 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.19■□□□□ 0.98
ZNF540Q8NDQ6 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF540Q8NDQ6 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.18■□□□□ 0.98
ZNF540Q8NDQ6 AC233723.2-201ENST00000623798 2106 ntBASIC21.18■□□□□ 0.98
ZNF540Q8NDQ6 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF540Q8NDQ6 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF540Q8NDQ6 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF540Q8NDQ6 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.18■□□□□ 0.98
ZNF540Q8NDQ6 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF540Q8NDQ6 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
ZNF540Q8NDQ6 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 ECEL1P2-201ENST00000461596 1295 ntBASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.17■□□□□ 0.98
ZNF540Q8NDQ6 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF540Q8NDQ6 EP400NL-214ENST00000641289 2402 ntBASIC21.16■□□□□ 0.98
ZNF540Q8NDQ6 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF540Q8NDQ6 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.16■□□□□ 0.98
ZNF540Q8NDQ6 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
ZNF540Q8NDQ6 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF540Q8NDQ6 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF540Q8NDQ6 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF540Q8NDQ6 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF540Q8NDQ6 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF540Q8NDQ6 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF540Q8NDQ6 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.15■□□□□ 0.98
ZNF540Q8NDQ6 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF540Q8NDQ6 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF540Q8NDQ6 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.15■□□□□ 0.98
ZNF540Q8NDQ6 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF540Q8NDQ6 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF540Q8NDQ6 LINC00565-201ENST00000562710 2331 ntBASIC21.15■□□□□ 0.98
ZNF540Q8NDQ6 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms