Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNRNP40Q96DI7 DUX4L19-201ENST00000557448 1267 ntBASIC21.04■□□□□ 0.96
SNRNP40Q96DI7 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SNRNP40Q96DI7 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.04■□□□□ 0.96
SNRNP40Q96DI7 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.04■□□□□ 0.96
SNRNP40Q96DI7 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.04■□□□□ 0.96
SNRNP40Q96DI7 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNRNP40Q96DI7 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNRNP40Q96DI7 MIR939-201ENST00000401314 82 ntBASIC21.03■□□□□ 0.96
SNRNP40Q96DI7 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SNRNP40Q96DI7 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.03■□□□□ 0.96
SNRNP40Q96DI7 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNRNP40Q96DI7 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNRNP40Q96DI7 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.02■□□□□ 0.96
SNRNP40Q96DI7 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.02■□□□□ 0.96
SNRNP40Q96DI7 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SNRNP40Q96DI7 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SNRNP40Q96DI7 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SNRNP40Q96DI7 AC004448.1-201ENST00000458332 883 ntBASIC21.02■□□□□ 0.96
SNRNP40Q96DI7 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SNRNP40Q96DI7 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.02■□□□□ 0.96
SNRNP40Q96DI7 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SNRNP40Q96DI7 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SNRNP40Q96DI7 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.01■□□□□ 0.95
SNRNP40Q96DI7 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SNRNP40Q96DI7 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.01■□□□□ 0.95
SNRNP40Q96DI7 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.01■□□□□ 0.95
SNRNP40Q96DI7 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.01■□□□□ 0.95
SNRNP40Q96DI7 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SNRNP40Q96DI7 AP001330.3-201ENST00000520123 633 ntBASIC21.01■□□□□ 0.95
SNRNP40Q96DI7 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.01■□□□□ 0.95
SNRNP40Q96DI7 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SNRNP40Q96DI7 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SNRNP40Q96DI7 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SNRNP40Q96DI7 AC097639.1-201ENST00000565519 1891 ntBASIC21.01■□□□□ 0.95
SNRNP40Q96DI7 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SNRNP40Q96DI7 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNRNP40Q96DI7 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21■□□□□ 0.95
SNRNP40Q96DI7 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21■□□□□ 0.95
SNRNP40Q96DI7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21■□□□□ 0.95
SNRNP40Q96DI7 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21■□□□□ 0.95
SNRNP40Q96DI7 SF1-220ENST00000626028 704 ntTSL 2 BASIC21■□□□□ 0.95
SNRNP40Q96DI7 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21■□□□□ 0.95
SNRNP40Q96DI7 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNRNP40Q96DI7 AC005703.6-201ENST00000623265 1329 ntBASIC21■□□□□ 0.95
SNRNP40Q96DI7 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNRNP40Q96DI7 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SNRNP40Q96DI7 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
SNRNP40Q96DI7 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SNRNP40Q96DI7 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.99■□□□□ 0.95
SNRNP40Q96DI7 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
SNRNP40Q96DI7 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.99■□□□□ 0.95
SNRNP40Q96DI7 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.99■□□□□ 0.95
SNRNP40Q96DI7 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SNRNP40Q96DI7 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SNRNP40Q96DI7 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SNRNP40Q96DI7 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SNRNP40Q96DI7 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.98■□□□□ 0.95
SNRNP40Q96DI7 SYT6-210ENST00000641643 1587 ntBASIC20.98■□□□□ 0.95
SNRNP40Q96DI7 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.98■□□□□ 0.95
SNRNP40Q96DI7 AC091305.1-201ENST00000479476 895 ntBASIC20.98■□□□□ 0.95
SNRNP40Q96DI7 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SNRNP40Q96DI7 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.98■□□□□ 0.95
SNRNP40Q96DI7 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.98■□□□□ 0.95
SNRNP40Q96DI7 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.98■□□□□ 0.95
SNRNP40Q96DI7 MIR6821-201ENST00000617625 74 ntBASIC20.98■□□□□ 0.95
SNRNP40Q96DI7 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SNRNP40Q96DI7 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SNRNP40Q96DI7 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SNRNP40Q96DI7 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SNRNP40Q96DI7 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
SNRNP40Q96DI7 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SNRNP40Q96DI7 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SNRNP40Q96DI7 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.97■□□□□ 0.95
SNRNP40Q96DI7 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SNRNP40Q96DI7 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC20.96■□□□□ 0.95
SNRNP40Q96DI7 AC096887.2-201ENST00000623443 1957 ntBASIC20.96■□□□□ 0.95
SNRNP40Q96DI7 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.96■□□□□ 0.95
SNRNP40Q96DI7 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.96■□□□□ 0.95
SNRNP40Q96DI7 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SNRNP40Q96DI7 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.95■□□□□ 0.94
SNRNP40Q96DI7 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SNRNP40Q96DI7 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.95■□□□□ 0.94
SNRNP40Q96DI7 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.95■□□□□ 0.94
SNRNP40Q96DI7 MIR4767-201ENST00000582827 78 ntBASIC20.95■□□□□ 0.94
SNRNP40Q96DI7 AC092171.4-201ENST00000609130 632 ntBASIC20.95■□□□□ 0.94
SNRNP40Q96DI7 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SNRNP40Q96DI7 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SNRNP40Q96DI7 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SNRNP40Q96DI7 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SNRNP40Q96DI7 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.94■□□□□ 0.94
SNRNP40Q96DI7 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SNRNP40Q96DI7 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SNRNP40Q96DI7 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SNRNP40Q96DI7 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SNRNP40Q96DI7 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SNRNP40Q96DI7 AC097381.1-201ENST00000429019 1296 ntBASIC20.94■□□□□ 0.94
SNRNP40Q96DI7 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
SNRNP40Q96DI7 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SNRNP40Q96DI7 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms