Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC3O43542 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC19.88■□□□□ 0.77
XRCC3O43542 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC3O43542 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
XRCC3O43542 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC3O43542 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.87■□□□□ 0.77
XRCC3O43542 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
XRCC3O43542 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
XRCC3O43542 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
XRCC3O43542 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
XRCC3O43542 AC233723.2-201ENST00000623798 2106 ntBASIC19.87■□□□□ 0.77
XRCC3O43542 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
XRCC3O43542 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
XRCC3O43542 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC19.86■□□□□ 0.77
XRCC3O43542 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
XRCC3O43542 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
XRCC3O43542 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
XRCC3O43542 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
XRCC3O43542 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
XRCC3O43542 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
XRCC3O43542 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
XRCC3O43542 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
XRCC3O43542 PFN2-211ENST00000489155 636 ntTSL 4 BASIC19.85■□□□□ 0.77
XRCC3O43542 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
XRCC3O43542 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
XRCC3O43542 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
XRCC3O43542 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
XRCC3O43542 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
XRCC3O43542 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.84■□□□□ 0.77
XRCC3O43542 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
XRCC3O43542 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.84■□□□□ 0.77
XRCC3O43542 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC19.84■□□□□ 0.77
XRCC3O43542 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC19.84■□□□□ 0.77
XRCC3O43542 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
XRCC3O43542 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
XRCC3O43542 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
XRCC3O43542 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.83■□□□□ 0.77
XRCC3O43542 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
XRCC3O43542 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.83■□□□□ 0.77
XRCC3O43542 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
XRCC3O43542 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.83■□□□□ 0.77
XRCC3O43542 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
XRCC3O43542 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
XRCC3O43542 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
XRCC3O43542 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
XRCC3O43542 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
XRCC3O43542 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.76
XRCC3O43542 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
XRCC3O43542 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
XRCC3O43542 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
XRCC3O43542 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.82■□□□□ 0.76
XRCC3O43542 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.82■□□□□ 0.76
XRCC3O43542 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
XRCC3O43542 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
XRCC3O43542 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
XRCC3O43542 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
XRCC3O43542 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
XRCC3O43542 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
XRCC3O43542 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
XRCC3O43542 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
XRCC3O43542 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
XRCC3O43542 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
XRCC3O43542 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
XRCC3O43542 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
XRCC3O43542 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
XRCC3O43542 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
XRCC3O43542 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
XRCC3O43542 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
XRCC3O43542 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
XRCC3O43542 EP400NL-214ENST00000641289 2402 ntBASIC19.8■□□□□ 0.76
XRCC3O43542 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
XRCC3O43542 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
XRCC3O43542 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
XRCC3O43542 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
XRCC3O43542 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
XRCC3O43542 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
XRCC3O43542 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
XRCC3O43542 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
XRCC3O43542 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
XRCC3O43542 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
XRCC3O43542 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
XRCC3O43542 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
XRCC3O43542 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.79■□□□□ 0.76
XRCC3O43542 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.79■□□□□ 0.76
XRCC3O43542 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
XRCC3O43542 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
XRCC3O43542 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
XRCC3O43542 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
XRCC3O43542 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
XRCC3O43542 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC19.78■□□□□ 0.76
XRCC3O43542 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
XRCC3O43542 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
XRCC3O43542 AC025884.2-201ENST00000553429 711 ntBASIC19.78■□□□□ 0.76
XRCC3O43542 MIR3960-201ENST00000583311 91 ntBASIC19.78■□□□□ 0.76
XRCC3O43542 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
XRCC3O43542 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
XRCC3O43542 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
XRCC3O43542 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.78■□□□□ 0.76
XRCC3O43542 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
XRCC3O43542 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms