Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PDLIM1O00151 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC22■■□□□ 1.11
PDLIM1O00151 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC22■■□□□ 1.11
PDLIM1O00151 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PDLIM1O00151 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PDLIM1O00151 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PDLIM1O00151 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
PDLIM1O00151 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PDLIM1O00151 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PDLIM1O00151 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
PDLIM1O00151 HSD17B1P1-201ENST00000590052 955 ntBASIC21.98■■□□□ 1.11
PDLIM1O00151 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
PDLIM1O00151 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PDLIM1O00151 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PDLIM1O00151 AL359504.2-201ENST00000605506 1601 ntBASIC21.98■■□□□ 1.11
PDLIM1O00151 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.98■■□□□ 1.11
PDLIM1O00151 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PDLIM1O00151 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PDLIM1O00151 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.97■■□□□ 1.11
PDLIM1O00151 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.97■■□□□ 1.11
PDLIM1O00151 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PDLIM1O00151 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PDLIM1O00151 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.97■■□□□ 1.11
PDLIM1O00151 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.96■■□□□ 1.11
PDLIM1O00151 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PDLIM1O00151 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PDLIM1O00151 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.96■■□□□ 1.11
PDLIM1O00151 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
PDLIM1O00151 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.96■■□□□ 1.11
PDLIM1O00151 C1orf229-201ENST00000623686 2258 ntBASIC21.96■■□□□ 1.11
PDLIM1O00151 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.96■■□□□ 1.11
PDLIM1O00151 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.96■■□□□ 1.11
PDLIM1O00151 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PDLIM1O00151 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
PDLIM1O00151 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
PDLIM1O00151 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PDLIM1O00151 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PDLIM1O00151 AC060814.1-201ENST00000554326 538 ntBASIC21.95■■□□□ 1.1
PDLIM1O00151 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.95■■□□□ 1.1
PDLIM1O00151 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
PDLIM1O00151 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PDLIM1O00151 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PDLIM1O00151 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PDLIM1O00151 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PDLIM1O00151 GPX1-201ENST00000419349 1106 ntBASIC21.94■■□□□ 1.1
PDLIM1O00151 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PDLIM1O00151 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
PDLIM1O00151 AL117328.2-201ENST00000624617 1940 ntBASIC21.94■■□□□ 1.1
PDLIM1O00151 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.94■■□□□ 1.1
PDLIM1O00151 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
PDLIM1O00151 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PDLIM1O00151 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.94■■□□□ 1.1
PDLIM1O00151 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.93■■□□□ 1.1
PDLIM1O00151 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PDLIM1O00151 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
PDLIM1O00151 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.93■■□□□ 1.1
PDLIM1O00151 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PDLIM1O00151 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.93■■□□□ 1.1
PDLIM1O00151 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.92■■□□□ 1.1
PDLIM1O00151 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.92■■□□□ 1.1
PDLIM1O00151 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PDLIM1O00151 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.92■■□□□ 1.1
PDLIM1O00151 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PDLIM1O00151 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.92■■□□□ 1.1
PDLIM1O00151 AC126177.7-201ENST00000547904 679 ntBASIC21.92■■□□□ 1.1
PDLIM1O00151 AC022413.1-201ENST00000624602 984 ntBASIC21.92■■□□□ 1.1
PDLIM1O00151 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PDLIM1O00151 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
PDLIM1O00151 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
PDLIM1O00151 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PDLIM1O00151 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PDLIM1O00151 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
PDLIM1O00151 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.91■■□□□ 1.1
PDLIM1O00151 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PDLIM1O00151 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
PDLIM1O00151 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PDLIM1O00151 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.91■■□□□ 1.1
PDLIM1O00151 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
PDLIM1O00151 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PDLIM1O00151 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PDLIM1O00151 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.9■■□□□ 1.1
PDLIM1O00151 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.9■■□□□ 1.1
PDLIM1O00151 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
PDLIM1O00151 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.9■■□□□ 1.1
PDLIM1O00151 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.9■■□□□ 1.1
PDLIM1O00151 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.9■■□□□ 1.1
PDLIM1O00151 LINC00565-201ENST00000562710 2331 ntBASIC21.9■■□□□ 1.1
PDLIM1O00151 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PDLIM1O00151 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PDLIM1O00151 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
PDLIM1O00151 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PDLIM1O00151 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PDLIM1O00151 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.89■■□□□ 1.09
PDLIM1O00151 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PDLIM1O00151 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.89■■□□□ 1.09
PDLIM1O00151 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.89■■□□□ 1.09
PDLIM1O00151 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.89■■□□□ 1.09
PDLIM1O00151 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PDLIM1O00151 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PDLIM1O00151 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms