Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TIMP4Q99727 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
TIMP4Q99727 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.42■■□□□ 1.02
TIMP4Q99727 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TIMP4Q99727 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.42■■□□□ 1.02
TIMP4Q99727 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.42■■□□□ 1.02
TIMP4Q99727 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.42■■□□□ 1.02
TIMP4Q99727 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.41■■□□□ 1.02
TIMP4Q99727 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TIMP4Q99727 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.41■■□□□ 1.02
TIMP4Q99727 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.41■■□□□ 1.02
TIMP4Q99727 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
TIMP4Q99727 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
TIMP4Q99727 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TIMP4Q99727 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TIMP4Q99727 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
TIMP4Q99727 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.41■■□□□ 1.02
TIMP4Q99727 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TIMP4Q99727 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
TIMP4Q99727 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TIMP4Q99727 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TIMP4Q99727 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.4■■□□□ 1.02
TIMP4Q99727 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TIMP4Q99727 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TIMP4Q99727 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
TIMP4Q99727 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TIMP4Q99727 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TIMP4Q99727 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.4■■□□□ 1.02
TIMP4Q99727 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
TIMP4Q99727 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
TIMP4Q99727 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.39■■□□□ 1.02
TIMP4Q99727 KRT18P24-201ENST00000344739 1156 ntBASIC21.39■■□□□ 1.01
TIMP4Q99727 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TIMP4Q99727 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.39■■□□□ 1.01
TIMP4Q99727 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.39■■□□□ 1.01
TIMP4Q99727 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TIMP4Q99727 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.39■■□□□ 1.01
TIMP4Q99727 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TIMP4Q99727 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TIMP4Q99727 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TIMP4Q99727 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TIMP4Q99727 AL592295.1-201ENST00000400984 884 ntBASIC21.38■■□□□ 1.01
TIMP4Q99727 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TIMP4Q99727 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.38■■□□□ 1.01
TIMP4Q99727 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.38■■□□□ 1.01
TIMP4Q99727 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.38■■□□□ 1.01
TIMP4Q99727 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.38■■□□□ 1.01
TIMP4Q99727 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.38■■□□□ 1.01
TIMP4Q99727 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TIMP4Q99727 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TIMP4Q99727 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TIMP4Q99727 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
TIMP4Q99727 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
TIMP4Q99727 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.37■■□□□ 1.01
TIMP4Q99727 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TIMP4Q99727 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TIMP4Q99727 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
TIMP4Q99727 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.37■■□□□ 1.01
TIMP4Q99727 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.37■■□□□ 1.01
TIMP4Q99727 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TIMP4Q99727 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TIMP4Q99727 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TIMP4Q99727 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TIMP4Q99727 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TIMP4Q99727 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.36■■□□□ 1.01
TIMP4Q99727 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.36■■□□□ 1.01
TIMP4Q99727 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TIMP4Q99727 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.36■■□□□ 1.01
TIMP4Q99727 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.36■■□□□ 1.01
TIMP4Q99727 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.35■■□□□ 1.01
TIMP4Q99727 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TIMP4Q99727 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TIMP4Q99727 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.35■■□□□ 1.01
TIMP4Q99727 THA1P-201ENST00000590384 1145 ntBASIC21.35■■□□□ 1.01
TIMP4Q99727 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TIMP4Q99727 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TIMP4Q99727 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
TIMP4Q99727 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
TIMP4Q99727 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
TIMP4Q99727 AC239859.2-201ENST00000444165 318 ntBASIC21.34■■□□□ 1.01
TIMP4Q99727 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.34■■□□□ 1.01
TIMP4Q99727 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.34■■□□□ 1.01
TIMP4Q99727 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TIMP4Q99727 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TIMP4Q99727 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TIMP4Q99727 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.33■■□□□ 1.01
TIMP4Q99727 GUSBP5-201ENST00000418136 578 ntBASIC21.33■■□□□ 1.01
TIMP4Q99727 AC120024.1-201ENST00000562672 995 ntBASIC21.33■■□□□ 1.01
TIMP4Q99727 Z92544.1-202ENST00000571933 1220 ntBASIC21.33■■□□□ 1.01
TIMP4Q99727 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TIMP4Q99727 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TIMP4Q99727 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.32■■□□□ 1
TIMP4Q99727 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.32■■□□□ 1
TIMP4Q99727 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TIMP4Q99727 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TIMP4Q99727 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TIMP4Q99727 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TIMP4Q99727 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.32■■□□□ 1
TIMP4Q99727 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TIMP4Q99727 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms