Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.21■□□□□ 0.193e-6■■■□□ 16.3
CDC40O60508 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.07■□□□□ 0.163e-6■■■□□ 16.3
CDC40O60508 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.46■□□□□ 0.073e-6■■■□□ 16.3
CDC40O60508 MED16-212ENST00000607471 2004 ntTSL 1 (best)14.32□□□□□ -0.123e-6■■■□□ 16.3
CDC40O60508 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.183e-6■■■□□ 16.3
CDC40O60508 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.213e-6■■■□□ 16.3
CDC40O60508 MED16-205ENST00000586017 1403 ntTSL 1 (best)13.61□□□□□ -0.233e-6■■■□□ 16.3
CDC40O60508 MED16-210ENST00000606248 3181 ntTSL 1 (best)12.61□□□□□ -0.393e-6■■■□□ 16.3
CDC40O60508 MED16-211ENST00000606828 599 ntTSL 1 (best)12.61□□□□□ -0.393e-6■■■□□ 16.3
CDC40O60508 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.443e-6■■■□□ 16.3
CDC40O60508 MED16-204ENST00000395808 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.463e-6■■■□□ 16.3
CDC40O60508 SHANK2-220ENST00000608988 1879 ntTSL 520.37■□□□□ 0.853e-6■■■□□ 16.3
CDC40O60508 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.51e-7■■■□□ 16.2
CDC40O60508 SRSF4-206ENST00000605204 1399 ntTSL 1 (best)17.64■□□□□ 0.411e-7■■■□□ 16.2
CDC40O60508 SRSF4-202ENST00000466448 1264 ntAPPRIS ALT2 TSL 317.57■□□□□ 0.41e-7■■■□□ 16.2
CDC40O60508 IP6K2-227ENST00000479914 1077 ntTSL 1 (best)15.69■□□□□ 0.13e-6■■■□□ 16.2
CDC40O60508 IP6K2-201ENST00000328631 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.443e-6■■■□□ 16.2
CDC40O60508 IP6K2-220ENST00000449563 580 ntTSL 412.17□□□□□ -0.463e-6■■■□□ 16.2
CDC40O60508 IP6K2-206ENST00000413654 553 ntTSL 411.45□□□□□ -0.583e-6■■■□□ 16.2
CDC40O60508 IP6K2-224ENST00000454335 631 ntTSL 411.01□□□□□ -0.653e-6■■■□□ 16.2
CDC40O60508 IP6K2-204ENST00000412850 543 ntTSL 49.7□□□□□ -0.863e-6■■■□□ 16.2
CDC40O60508 IP6K2-215ENST00000437427 576 ntTSL 48.54□□□□□ -1.043e-6■■■□□ 16.2
CDC40O60508 IP6K2-217ENST00000443853 579 ntTSL 38.54□□□□□ -1.043e-6■■■□□ 16.2
CDC40O60508 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.623e-11■■■□□ 16.2
CDC40O60508 PCED1A-204ENST00000448755 1170 ntTSL 317.11■□□□□ 0.333e-11■■■□□ 16.2
CDC40O60508 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.88■□□□□ 0.293e-11■■■□□ 16.2
CDC40O60508 PCED1A-203ENST00000439542 1187 ntTSL 214.77□□□□□ -0.053e-11■■■□□ 16.2
CDC40O60508 PSMA3-AS1-212ENST00000556400 604 ntTSL 213.18□□□□□ -0.33e-9■■■□□ 16.2
CDC40O60508 PSMA3-AS1-208ENST00000555275 903 ntTSL 2 BASIC10.88□□□□□ -0.673e-9■■■□□ 16.2
CDC40O60508 PSMA3-AS1-201ENST00000551597 507 ntTSL 1 (best)10.61□□□□□ -0.713e-9■■■□□ 16.2
CDC40O60508 PSMA3-AS1-209ENST00000555707 1983 ntTSL 1 (best)9.42□□□□□ -0.93e-9■■■□□ 16.2
CDC40O60508 PSMA3-AS1-214ENST00000557660 2360 ntTSL 2 BASIC9.34□□□□□ -0.913e-9■■■□□ 16.2
CDC40O60508 PSMA3-AS1-205ENST00000554378 741 ntTSL 1 (best)9.26□□□□□ -0.933e-9■■■□□ 16.2
CDC40O60508 PSMA3-AS1-204ENST00000554360 2475 ntTSL 1 (best) BASIC8.73□□□□□ -1.013e-9■■■□□ 16.2
CDC40O60508 PSMA3-AS1-210ENST00000556002 1039 ntTSL 2 BASIC7.96□□□□□ -1.143e-9■■■□□ 16.2
CDC40O60508 C14orf37-203ENST00000554218 572 ntTSL 47.25□□□□□ -1.253e-9■■■□□ 16.2
CDC40O60508 PSMA3-AS1-206ENST00000555037 446 ntTSL 1 (best) BASIC6.33□□□□□ -1.43e-9■■■□□ 16.2
CDC40O60508 PSMA3-AS1-203ENST00000554309 597 ntTSL 35.75□□□□□ -1.493e-9■■■□□ 16.2
CDC40O60508 PSMA3-AS1-202ENST00000553657 398 ntTSL 34.88□□□□□ -1.633e-9■■■□□ 16.2
CDC40O60508 POLR2A-209ENST00000617998 6751 ntTSL 1 (best)10.96□□□□□ -0.654e-9■■■□□ 16.2
CDC40O60508 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.423e-6■■■□□ 16.2
CDC40O60508 TNS3-201ENST00000311160 7618 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.562e-6■■■□□ 16.2
CDC40O60508 PLXNB1-209ENST00000466353 626 ntTSL 317.26■□□□□ 0.357e-8■■■□□ 16.1
CDC40O60508 EIF4A1-216ENST00000580888 710 ntTSL 216.14■□□□□ 0.172e-6■■■□□ 16.1
CDC40O60508 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.74■□□□□ 0.112e-6■■■□□ 16.1
CDC40O60508 EIF4A1-208ENST00000578476 573 ntTSL 215.13■□□□□ 0.012e-6■■■□□ 16.1
CDC40O60508 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.112e-6■■■□□ 16.1
CDC40O60508 EIF4A1-214ENST00000580461 909 ntTSL 211.77□□□□□ -0.532e-6■■■□□ 16.1
CDC40O60508 EIF4A1-213ENST00000579139 568 ntTSL 410.79□□□□□ -0.682e-6■■■□□ 16.1
CDC40O60508 EIF4A1-236ENST00000584901 1021 ntTSL 210.73□□□□□ -0.692e-6■■■□□ 16.1
CDC40O60508 EIF4A1-226ENST00000582848 591 ntTSL 310.73□□□□□ -0.692e-6■■■□□ 16.1
CDC40O60508 AC016876.2-201ENST00000581621 4554 ntTSL 2 BASIC10.38□□□□□ -0.752e-6■■■□□ 16.1
CDC40O60508 EIF4A1-218ENST00000581544 1444 ntTSL 210.35□□□□□ -0.752e-6■■■□□ 16.1
CDC40O60508 SENP3-EIF4A1-201ENST00000614237 3519 ntAPPRIS P1 TSL 2 BASIC9.82□□□□□ -0.842e-6■■■□□ 16.1
CDC40O60508 EIF4A1-223ENST00000582169 552 ntTSL 49.78□□□□□ -0.842e-6■■■□□ 16.1
CDC40O60508 EIF4A1-225ENST00000582746 1645 ntTSL 5 BASIC9.77□□□□□ -0.852e-6■■■□□ 16.1
CDC40O60508 EIF4A1-229ENST00000583802 563 ntTSL 49.76□□□□□ -0.852e-6■■■□□ 16.1
CDC40O60508 EIF4A1-231ENST00000584054 716 ntTSL 29.01□□□□□ -0.972e-6■■■□□ 16.1
CDC40O60508 EIF4A1-215ENST00000580886 562 ntTSL 29.01□□□□□ -0.972e-6■■■□□ 16.1
CDC40O60508 EIF4A1-233ENST00000584784 818 ntTSL 58.84□□□□□ -0.992e-6■■■□□ 16.1
CDC40O60508 EIF4A1-209ENST00000578495 916 ntTSL 58.79□□□□□ -12e-6■■■□□ 16.1
CDC40O60508 EIF4A1-232ENST00000584712 782 ntTSL 28.77□□□□□ -1.012e-6■■■□□ 16.1
CDC40O60508 EIF4A1-212ENST00000579085 569 ntTSL 48.21□□□□□ -1.12e-6■■■□□ 16.1
CDC40O60508 EIF4A1-237ENST00000585024 577 ntTSL 48.02□□□□□ -1.132e-6■■■□□ 16.1
CDC40O60508 EIF4A1-202ENST00000396527 1169 ntTSL 27.05□□□□□ -1.282e-6■■■□□ 16.1
CDC40O60508 EIF4A1-230ENST00000583899 665 ntTSL 35.71□□□□□ -1.52e-6■■■□□ 16.1
CDC40O60508 EIF4A1-211ENST00000578754 547 ntTSL 44.96□□□□□ -1.622e-6■■■□□ 16.1
CDC40O60508 EIF4A1-224ENST00000582213 560 ntTSL 43.68□□□□□ -1.822e-6■■■□□ 16.1
CDC40O60508 FLNA-217ENST00000498411 368 ntTSL 313.9□□□□□ -0.183e-7■■■□□ 16.1
CDC40O60508 COL27A1-207ENST00000494090 5329 ntTSL 1 (best)18.19■□□□□ 0.53e-6■■■□□ 16.1
CDC40O60508 MLXIPL-208ENST00000456640 706 ntTSL 515.74■□□□□ 0.112e-10■■■□□ 16.1
CDC40O60508 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.186e-6■■■□□ 16
CDC40O60508 CFLAR-211ENST00000439154 1310 ntTSL 1 (best)15.13■□□□□ 0.016e-6■■■□□ 16
CDC40O60508 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.74□□□□□ -0.056e-6■■■□□ 16
CDC40O60508 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.37□□□□□ -0.116e-6■■■□□ 16
CDC40O60508 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.166e-6■■■□□ 16
CDC40O60508 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.65□□□□□ -0.226e-6■■■□□ 16
CDC40O60508 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.53□□□□□ -0.246e-6■■■□□ 16
CDC40O60508 CFLAR-202ENST00000340870 963 ntTSL 5 BASIC9.83□□□□□ -0.846e-6■■■□□ 16
CDC40O60508 CFLAR-215ENST00000457277 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.966e-6■■■□□ 16
CDC40O60508 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.16e-6■■■□□ 16
CDC40O60508 CFLAR-212ENST00000440180 1198 ntTSL 1 (best) BASIC6.47□□□□□ -1.376e-6■■■□□ 16
CDC40O60508 CFLAR-223ENST00000479953 1230 ntTSL 2 BASIC6.46□□□□□ -1.386e-6■■■□□ 16
CDC40O60508 CFLAR-220ENST00000470178 516 ntTSL 25.43□□□□□ -1.546e-6■■■□□ 16
CDC40O60508 CFLAR-217ENST00000461422 717 ntTSL 24.7□□□□□ -1.666e-6■■■□□ 16
CDC40O60508 CFLAR-219ENST00000462763 588 ntTSL 23.26□□□□□ -1.896e-6■■■□□ 16
CDC40O60508 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC2.09□□□□□ -2.076e-6■■■□□ 16
CDC40O60508 ASGR1-206ENST00000573596 2083 ntTSL 516.46■□□□□ 0.231e-8■■■□□ 15.9
CDC40O60508 ASGR1-205ENST00000573083 855 ntTSL 39.19□□□□□ -0.941e-8■■■□□ 15.9
CDC40O60508 NAP1L1-222ENST00000551992 1074 ntTSL 522.25■■□□□ 1.151e-7■■■□□ 15.9
CDC40O60508 PRKAR1A-216ENST00000589017 1116 ntTSL 317.2■□□□□ 0.341e-7■■■□□ 15.9
CDC40O60508 PRKAR1A-207ENST00000585608 848 ntTSL 316.51■□□□□ 0.231e-7■■■□□ 15.9
CDC40O60508 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.061e-7■■■□□ 15.9
CDC40O60508 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.111e-7■■■□□ 15.9
CDC40O60508 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.95□□□□□ -0.181e-7■■■□□ 15.9
CDC40O60508 AKAP1-217ENST00000576295 614 ntTSL 313.38□□□□□ -0.271e-7■■■□□ 15.9
CDC40O60508 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.331e-7■■■□□ 15.9
CDC40O60508 SNHG14-212ENST00000549804 7844 ntTSL 5 BASIC12.23□□□□□ -0.451e-7■■■□□ 15.9
CDC40O60508 PRKAR1A-217ENST00000589228 4256 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.591e-7■■■□□ 15.9
CDC40O60508 AKAP1-208ENST00000572557 3098 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.671e-7■■■□□ 15.9
Retrieved 100 of 5,364 protein–RNA pairs in 61.6 ms