RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 DCAF8L2P0C7V8 631 aa32.89■■■□□ 2.86
COL27A1-207ENST00000494090 NISCHQ9Y2I1 1504 aa31.95■■■□□ 2.71
COL27A1-207ENST00000494090 SUPT5HO00267 1087 aaKnown RBP31.47■■■□□ 2.63
COL27A1-207ENST00000494090 SHROOM4Q9ULL8 1493 aa30.88■■■□□ 2.53
COL27A1-207ENST00000494090 EHMT2Q96KQ7 1210 aa30.2■■■□□ 2.42
COL27A1-207ENST00000494090 PELP1Q8IZL8 1130 aaKnown RBP30.14■■■□□ 2.42
COL27A1-207ENST00000494090 APLP2Q06481 763 aa30.08■■■□□ 2.41
COL27A1-207ENST00000494090 FAM9AQ8IZU1 332 aaPredicted RBP29.91■■■□□ 2.38
COL27A1-207ENST00000494090 PCGF6Q9BYE7 350 aa29.62■■■□□ 2.33
COL27A1-207ENST00000494090 ZEB1P37275 1124 aaPredicted RBP29.32■■■□□ 2.28
COL27A1-207ENST00000494090 TTBK1Q5TCY1 1321 aaPredicted RBP29.25■■■□□ 2.27
COL27A1-207ENST00000494090 TRIM41Q8WV44 630 aa29.22■■■□□ 2.27
COL27A1-207ENST00000494090 CENPBP07199 599 aaPredicted RBP29.11■■■□□ 2.25
COL27A1-207ENST00000494090 CCER1Q8TC90 406 aaPredicted RBP29.03■■■□□ 2.24
COL27A1-207ENST00000494090 RANGAP1P46060 587 aaPredicted RBP28.86■■■□□ 2.21
COL27A1-207ENST00000494090 ATP1B4Q9UN42 357 aaPredicted RBP28.79■■■□□ 2.2
COL27A1-207ENST00000494090 UBTFP17480 764 aaKnown RBP28.77■■■□□ 2.2
COL27A1-207ENST00000494090 ERICH6Q7L0X2 663 aa28.66■■■□□ 2.18
COL27A1-207ENST00000494090 TRIM26Q12899 539 aaPredicted RBP28.52■■■□□ 2.16
COL27A1-207ENST00000494090 NEFLP07196 543 aa28.36■■■□□ 2.13
COL27A1-207ENST00000494090 HRCP23327 699 aa28.33■■■□□ 2.13
COL27A1-207ENST00000494090 YTHDC1Q96MU7 727 aaKnown RBP28.32■■■□□ 2.12
COL27A1-207ENST00000494090 PPARGC1BQ86YN6 1023 aaKnown RBP28.3■■■□□ 2.12
COL27A1-207ENST00000494090 CHIC1Q5VXU3 224 aa28.2■■■□□ 2.11
COL27A1-207ENST00000494090 MYT1Q01538 1121 aa28.18■■■□□ 2.1
COL27A1-207ENST00000494090 LOC105371045A0A1W2PR82 267 aa28.08■■■□□ 2.09
COL27A1-207ENST00000494090 MYT1LQ9UL68 1186 aa27.89■■■□□ 2.05
COL27A1-207ENST00000494090 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.87■■■□□ 2.05
COL27A1-207ENST00000494090 HNRNPUL2Q1KMD3 747 aaKnown RBP27.87■■■□□ 2.05
COL27A1-207ENST00000494090 ITGAEP38570 1179 aa27.79■■■□□ 2.04
COL27A1-207ENST00000494090 DAXXQ9UER7 740 aaPredicted RBP27.6■■■□□ 2.01
COL27A1-207ENST00000494090 POLR3GLQ9BT43 218 aa27.57■■■□□ 2
COL27A1-207ENST00000494090 DIEXFQ68CQ4 756 aaKnown RBP27.48■■□□□ 1.99
COL27A1-207ENST00000494090 SLC4A1APQ9BWU0 796 aaKnown RBP27.19■■□□□ 1.94
COL27A1-207ENST00000494090 FAM50AQ14320 339 aaKnown RBP27.16■■□□□ 1.94
COL27A1-207ENST00000494090 CNGB1Q14028 1251 aaPredicted RBP27.15■■□□□ 1.94
COL27A1-207ENST00000494090 ABCC9O60706 1549 aa27.09■■□□□ 1.93
COL27A1-207ENST00000494090 PABPN1Q86U42 306 aaKnown RBP eCLIP27.01■■□□□ 1.911e-9■■■■■ 46.5
COL27A1-207ENST00000494090 TRIM52Q96A61 297 aa27■■□□□ 1.91
COL27A1-207ENST00000494090 NEUROD1Q13562 356 aa26.96■■□□□ 1.91
COL27A1-207ENST00000494090 CLSPNQ9HAW4 1339 aa26.95■■□□□ 1.91
COL27A1-207ENST00000494090 GTF3C3Q9Y5Q9 886 aa26.92■■□□□ 1.9
COL27A1-207ENST00000494090 ZNF316A6NFI3 1004 aaPredicted RBP26.89■■□□□ 1.9
COL27A1-207ENST00000494090 RTL5Q5HYW3 569 aaPredicted RBP26.88■■□□□ 1.89
COL27A1-207ENST00000494090 ANP32CO43423 234 aa26.84■■□□□ 1.89
COL27A1-207ENST00000494090 CSRNP3Q8WYN3 585 aa26.75■■□□□ 1.87
COL27A1-207ENST00000494090 BCANQ96GW7 911 aa26.7■■□□□ 1.87
COL27A1-207ENST00000494090 ZBTB47Q9UFB7 747 aaPredicted RBP26.65■■□□□ 1.86
COL27A1-207ENST00000494090 FBLN2P98095 1184 aa26.64■■□□□ 1.86
COL27A1-207ENST00000494090 ACIN1Q9UKV3 1341 aaKnown RBP26.64■■□□□ 1.86
COL27A1-207ENST00000494090 CDK11AQ9UQ88 783 aaPredicted RBP26.63■■□□□ 1.85
COL27A1-207ENST00000494090 ZNF326Q5BKZ1 582 aaKnown RBP26.59■■□□□ 1.85
COL27A1-207ENST00000494090 DCAF1Q9Y4B6 1507 aa26.55■■□□□ 1.84
COL27A1-207ENST00000494090 NEFMP07197 916 aa26.51■■□□□ 1.83
COL27A1-207ENST00000494090 ZCCHC6Q5VYS8 1495 aaKnown RBP26.5■■□□□ 1.83
COL27A1-207ENST00000494090 P3H3Q8IVL6 736 aa26.43■■□□□ 1.82
COL27A1-207ENST00000494090 CANXP27824 592 aaKnown RBP26.36■■□□□ 1.81
COL27A1-207ENST00000494090 SCRIBQ14160 1630 aa26.34■■□□□ 1.81
COL27A1-207ENST00000494090 SLC24A1O60721 1099 aa26.25■■□□□ 1.79
COL27A1-207ENST00000494090 ESF1Q9H501 851 aaKnown RBP26.22■■□□□ 1.79
COL27A1-207ENST00000494090 ARID3CA6NKF2 412 aa26.21■■□□□ 1.79
COL27A1-207ENST00000494090 ZNF777Q9ULD5 760 aaPredicted RBP26.21■■□□□ 1.79
COL27A1-207ENST00000494090 TONSLQ96HA7 1378 aa26.19■■□□□ 1.78
COL27A1-207ENST00000494090 ANP32AP39687 249 aaKnown RBP26.16■■□□□ 1.78
COL27A1-207ENST00000494090 FKBP8Q14318 412 aa26.09■■□□□ 1.77
COL27A1-207ENST00000494090 NPM1P06748 294 aaKnown RBP eCLIP26.07■■□□□ 1.76
COL27A1-207ENST00000494090 CCDC180Q9P1Z9 1646 aa26.06■■□□□ 1.76
COL27A1-207ENST00000494090 DDX10Q13206 875 aaKnown RBP26.03■■□□□ 1.76
COL27A1-207ENST00000494090 STAG3Q9UJ98 1225 aa26.01■■□□□ 1.75
COL27A1-207ENST00000494090 HNRNPUQ00839 825 aaKnown RBP eCLIP25.99■■□□□ 1.751e-6■■□□□ 13.5
COL27A1-207ENST00000494090 BCL11AQ9H165 835 aa25.94■■□□□ 1.74
COL27A1-207ENST00000494090 CHGAP10645 457 aaKnown RBP25.91■■□□□ 1.74
COL27A1-207ENST00000494090 NPM2Q86SE8 214 aaKnown RBP25.9■■□□□ 1.74
COL27A1-207ENST00000494090 FAM9BQ8IZU0 186 aa25.88■■□□□ 1.73
COL27A1-207ENST00000494090 CLIP1P30622 1438 aa25.85■■□□□ 1.73
COL27A1-207ENST00000494090 MYO15BQ96JP2 1530 aa25.81■■□□□ 1.72
COL27A1-207ENST00000494090 CHIC2Q9UKJ5 165 aa25.79■■□□□ 1.72
COL27A1-207ENST00000494090 EEA1Q15075 1411 aa25.79■■□□□ 1.72
COL27A1-207ENST00000494090 MIER1Q8N108 512 aa25.78■■□□□ 1.72
COL27A1-207ENST00000494090 UPF2Q9HAU5 1272 aaKnown RBP25.77■■□□□ 1.72
COL27A1-207ENST00000494090 TMC1Q8TDI8 760 aa25.74■■□□□ 1.71
COL27A1-207ENST00000494090 TSPY4P0CV99 314 aa25.74■■□□□ 1.71
COL27A1-207ENST00000494090 TSPY10P0CW01 314 aa25.74■■□□□ 1.71
COL27A1-207ENST00000494090 MTUS2Q5JR59 1369 aa25.74■■□□□ 1.71
COL27A1-207ENST00000494090 SCAF1Q9H7N4 1312 aaKnown RBP25.74■■□□□ 1.71
COL27A1-207ENST00000494090 RSF1Q96T23 1441 aaPredicted RBP25.72■■□□□ 1.71
COL27A1-207ENST00000494090 ANP32BQ92688 251 aaKnown RBP25.72■■□□□ 1.71
COL27A1-207ENST00000494090 GOLGA3Q08378 1498 aa25.71■■□□□ 1.71
COL27A1-207ENST00000494090 CCDC136Q96JN2 1154 aa25.7■■□□□ 1.7
COL27A1-207ENST00000494090 HSP90AA1P07900 732 aaKnown RBP25.69■■□□□ 1.7
COL27A1-207ENST00000494090 CEP162Q5TB80 1403 aa25.68■■□□□ 1.7
COL27A1-207ENST00000494090 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.68■■□□□ 1.7
COL27A1-207ENST00000494090 MRS2Q9HD23 443 aa25.68■■□□□ 1.7
COL27A1-207ENST00000494090 SALL2Q9Y467 1007 aaPredicted RBP25.63■■□□□ 1.69
COL27A1-207ENST00000494090 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.62■■□□□ 1.699e-9■■□□□ 12.1
COL27A1-207ENST00000494090 EIF4G2P78344 907 aaKnown RBP eCLIP25.58■■□□□ 1.69
COL27A1-207ENST00000494090 WDR43Q15061 677 aaKnown RBP eCLIP25.58■■□□□ 1.693e-7■■□□□ 12.4
COL27A1-207ENST00000494090 CHMP7Q8WUX9 453 aaPredicted RBP25.58■■□□□ 1.69
COL27A1-207ENST00000494090 RB1CC1Q8TDY2 1594 aa25.56■■□□□ 1.68
COL27A1-207ENST00000494090 PLPPR3Q6T4P5 718 aa25.54■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms