RNA–Protein interactions for RNA: ENST00000608988.5

SHANK2-220, Transcript of SH3 and multiple ankyrin repeat domains 2, humanhuman

TSL 5

Gene SHANK2, Length 1,879 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2-220ENST00000608988 NISCHQ9Y2I1 1504 aa44.87■■■■■ 4.77
SHANK2-220ENST00000608988 SHROOM4Q9ULL8 1493 aa38.17■■■■□ 3.7
SHANK2-220ENST00000608988 ZCCHC6Q5VYS8 1495 aaKnown RBP38.12■■■■□ 3.69
SHANK2-220ENST00000608988 CCDC180Q9P1Z9 1646 aa38.11■■■■□ 3.69
SHANK2-220ENST00000608988 SUPT5HO00267 1087 aaKnown RBP37.76■■■■□ 3.64
SHANK2-220ENST00000608988 HRCP23327 699 aa37.25■■■■□ 3.55
SHANK2-220ENST00000608988 CHIC1Q5VXU3 224 aa37.25■■■■□ 3.55
SHANK2-220ENST00000608988 MYO15BQ96JP2 1530 aa37.2■■■■□ 3.55
SHANK2-220ENST00000608988 DCAF1Q9Y4B6 1507 aa37.08■■■■□ 3.53
SHANK2-220ENST00000608988 PCGF6Q9BYE7 350 aa36.54■■■■□ 3.44
SHANK2-220ENST00000608988 DCAF8L2P0C7V8 631 aa36.43■■■■□ 3.42
SHANK2-220ENST00000608988 ABCC9O60706 1549 aa36.12■■■■□ 3.37
SHANK2-220ENST00000608988 TRIM26Q12899 539 aaPredicted RBP36.01■■■■□ 3.35
SHANK2-220ENST00000608988 PPARGC1BQ86YN6 1023 aaKnown RBP35.96■■■■□ 3.35
SHANK2-220ENST00000608988 LOC105371045A0A1W2PR82 267 aa35.92■■■■□ 3.34
SHANK2-220ENST00000608988 ZEB1P37275 1124 aaPredicted RBP35.73■■■■□ 3.31
SHANK2-220ENST00000608988 RSF1Q96T23 1441 aaPredicted RBP35.65■■■■□ 3.3
SHANK2-220ENST00000608988 RB1CC1Q8TDY2 1594 aa35.52■■■■□ 3.28
SHANK2-220ENST00000608988 SCRIBQ14160 1630 aa35.41■■■■□ 3.26
SHANK2-220ENST00000608988 TRIM41Q8WV44 630 aa35.33■■■■□ 3.25
SHANK2-220ENST00000608988 PELP1Q8IZL8 1130 aaKnown RBP35.11■■■■□ 3.21
SHANK2-220ENST00000608988 NACADO15069 1562 aa35.01■■■■□ 3.2
SHANK2-220ENST00000608988 FAM9AQ8IZU1 332 aaPredicted RBP34.78■■■■□ 3.16
SHANK2-220ENST00000608988 MROH2BQ7Z745 1585 aa34.77■■■■□ 3.16
SHANK2-220ENST00000608988 CECR2Q9BXF3 1484 aa34.73■■■■□ 3.15
SHANK2-220ENST00000608988 BAZ1AQ9NRL2 1556 aaPredicted RBP34.68■■■■□ 3.14
SHANK2-220ENST00000608988 EIF4G1Q04637 1599 aaKnown RBP34.64■■■■□ 3.14
SHANK2-220ENST00000608988 WIZO95785 1651 aa34.61■■■■□ 3.13
SHANK2-220ENST00000608988 SCAF1Q9H7N4 1312 aaKnown RBP34.54■■■■□ 3.12
SHANK2-220ENST00000608988 WRNQ14191 1432 aaPredicted RBP eCLIP34.4■■■■□ 3.1
SHANK2-220ENST00000608988 TOP2AP11388 1531 aaKnown RBP34.29■■■■□ 3.08
SHANK2-220ENST00000608988 CCER1Q8TC90 406 aaPredicted RBP34.24■■■■□ 3.07
SHANK2-220ENST00000608988 EHMT2Q96KQ7 1210 aa34.22■■■■□ 3.07
SHANK2-220ENST00000608988 ACIN1Q9UKV3 1341 aaKnown RBP34.17■■■■□ 3.06
SHANK2-220ENST00000608988 EEA1Q15075 1411 aa34.14■■■■□ 3.06
SHANK2-220ENST00000608988 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.13■■■■□ 3.05
SHANK2-220ENST00000608988 TNIKQ9UKE5 1360 aa34.07■■■■□ 3.04
SHANK2-220ENST00000608988 SMARCA4P51532 1647 aa34.06■■■■□ 3.04
SHANK2-220ENST00000608988 CEP162Q5TB80 1403 aa34.04■■■■□ 3.04
SHANK2-220ENST00000608988 SMARCA2P51531 1590 aa34.04■■■■□ 3.04
SHANK2-220ENST00000608988 CENPBP07199 599 aaPredicted RBP34■■■■□ 3.03
SHANK2-220ENST00000608988 CCDC88BA6NC98 1476 aa33.99■■■■□ 3.03
SHANK2-220ENST00000608988 ABCC8Q09428 1581 aa33.96■■■■□ 3.03
SHANK2-220ENST00000608988 DIEXFQ68CQ4 756 aaKnown RBP33.96■■■■□ 3.03
SHANK2-220ENST00000608988 NEUROD1Q13562 356 aa33.88■■■■□ 3.01
SHANK2-220ENST00000608988 UNC13AQ9UPW8 1703 aa33.84■■■■□ 3.01
SHANK2-220ENST00000608988 SOGA1O94964 1423 aa33.77■■■■□ 3
SHANK2-220ENST00000608988 GOLGA3Q08378 1498 aa33.76■■■■□ 3
SHANK2-220ENST00000608988 CSRNP3Q8WYN3 585 aa33.74■■■□□ 2.99
SHANK2-220ENST00000608988 MYT1Q01538 1121 aa33.67■■■□□ 2.98
SHANK2-220ENST00000608988 ZNF316A6NFI3 1004 aaPredicted RBP33.65■■■□□ 2.98
SHANK2-220ENST00000608988 GTF3C3Q9Y5Q9 886 aa33.63■■■□□ 2.97
SHANK2-220ENST00000608988 KIF21BO75037 1637 aa33.58■■■□□ 2.97
SHANK2-220ENST00000608988 PEG3Q9GZU2 1588 aa33.53■■■□□ 2.96
SHANK2-220ENST00000608988 BICRAQ9NZM4 1560 aa33.53■■■□□ 2.96
SHANK2-220ENST00000608988 CEP164Q9UPV0 1460 aa33.53■■■□□ 2.96
SHANK2-220ENST00000608988 RUSC2Q8N2Y8 1516 aa33.51■■■□□ 2.96
SHANK2-220ENST00000608988 UBTFP17480 764 aaKnown RBP33.51■■■□□ 2.96
SHANK2-220ENST00000608988 BAZ1BQ9UIG0 1483 aaKnown RBP33.4■■■□□ 2.94
SHANK2-220ENST00000608988 TTBK1Q5TCY1 1321 aaPredicted RBP33.36■■■□□ 2.93
SHANK2-220ENST00000608988 VPS8Q8N3P4 1428 aa33.32■■■□□ 2.92
SHANK2-220ENST00000608988 CLIP1P30622 1438 aa33.3■■■□□ 2.92
SHANK2-220ENST00000608988 SYNJ1O43426 1573 aa33.27■■■□□ 2.92
SHANK2-220ENST00000608988 PABPN1Q86U42 306 aaKnown RBP eCLIP33.13■■■□□ 2.89
SHANK2-220ENST00000608988 CLSPNQ9HAW4 1339 aa33.13■■■□□ 2.89
SHANK2-220ENST00000608988 APLP2Q06481 763 aa33.05■■■□□ 2.88
SHANK2-220ENST00000608988 MIER1Q8N108 512 aa33.05■■■□□ 2.88
SHANK2-220ENST00000608988 HNRNPUL2Q1KMD3 747 aaKnown RBP33.04■■■□□ 2.88
SHANK2-220ENST00000608988 RAPGEF2Q9Y4G8 1499 aa32.99■■■□□ 2.87
SHANK2-220ENST00000608988 ATAD2BQ9ULI0 1458 aa32.97■■■□□ 2.87
SHANK2-220ENST00000608988 TOP2BQ02880 1626 aa32.96■■■□□ 2.87
SHANK2-220ENST00000608988 ERICH3Q5RHP9 1530 aa32.95■■■□□ 2.87
SHANK2-220ENST00000608988 YTHDC1Q96MU7 727 aaKnown RBP32.92■■■□□ 2.86
SHANK2-220ENST00000608988 BIVM-ERCC5R4GMW8 1640 aa32.89■■■□□ 2.86
SHANK2-220ENST00000608988 PRXQ9BXM0 1461 aa32.77■■■□□ 2.84
SHANK2-220ENST00000608988 DHX57Q6P158 1386 aaKnown RBP32.76■■■□□ 2.83
SHANK2-220ENST00000608988 ARAP1Q96P48 1450 aa32.71■■■□□ 2.83
SHANK2-220ENST00000608988 CUX2O14529 1486 aa32.7■■■□□ 2.83
SHANK2-220ENST00000608988 RRBP1Q9P2E9 1410 aaKnown RBP32.68■■■□□ 2.82
SHANK2-220ENST00000608988 KIF27Q86VH2 1401 aa32.45■■■□□ 2.79
SHANK2-220ENST00000608988 HMGXB3Q12766 1538 aa32.45■■■□□ 2.78
SHANK2-220ENST00000608988 CCNB3Q8WWL7 1395 aa32.4■■■□□ 2.78
SHANK2-220ENST00000608988 CUX1P39880 1505 aa32.38■■■□□ 2.77
SHANK2-220ENST00000608988 MAP3K1Q13233 1512 aa32.38■■■□□ 2.77
SHANK2-220ENST00000608988 KANK4Q5T7N3 995 aaPredicted RBP32.37■■■□□ 2.77
SHANK2-220ENST00000608988 SUPT16HQ9Y5B9 1047 aaKnown RBP32.35■■■□□ 2.77
SHANK2-220ENST00000608988 RANGAP1P46060 587 aaPredicted RBP32.33■■■□□ 2.77
SHANK2-220ENST00000608988 NCAPD3P42695 1498 aa32.32■■■□□ 2.76
SHANK2-220ENST00000608988 ARHGAP35Q9NRY4 1499 aa32.31■■■□□ 2.76
SHANK2-220ENST00000608988 CFTRP13569 1480 aa32.19■■■□□ 2.74
SHANK2-220ENST00000608988 TIAM1Q13009 1591 aa32.17■■■□□ 2.74
SHANK2-220ENST00000608988 MAPKBP1O60336 1514 aa32.15■■■□□ 2.74
SHANK2-220ENST00000608988 PRDM2Q13029 1718 aa32.15■■■□□ 2.74
SHANK2-220ENST00000608988 RAB3GAP2Q9H2M9 1393 aa32.11■■■□□ 2.73
SHANK2-220ENST00000608988 SETD5Q9C0A6 1442 aa32.06■■■□□ 2.72
SHANK2-220ENST00000608988 TIMELESSQ9UNS1 1208 aa32.04■■■□□ 2.72
SHANK2-220ENST00000608988 CC2D2AQ9P2K1 1620 aa32.01■■■□□ 2.71
SHANK2-220ENST00000608988 LRRC9Q6ZRR7 1453 aa32■■■□□ 2.71
SHANK2-220ENST00000608988 CFAP43Q8NDM7 1665 aa31.98■■■□□ 2.71
SHANK2-220ENST00000608988 TSHZ2Q9NRE2 1034 aa31.97■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 152.6 ms