RNA–Protein interactions for RNA: ENST00000614237.1

SENP3-EIF4A1-201, Transcript of SENP3-EIF4A1 readthrough (NMD candidate), humanhuman

APPRIS P1 TSL 2 BASIC

Gene SENP3-EIF4A1, Length 3,519 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1-201ENST00000614237 NISCHQ9Y2I1 1504 aa23.48■■□□□ 1.35
SENP3-EIF4A1-201ENST00000614237 CCDC180Q9P1Z9 1646 aa20.39■□□□□ 0.85
SENP3-EIF4A1-201ENST00000614237 ZCCHC6Q5VYS8 1495 aaKnown RBP19.88■□□□□ 0.77
SENP3-EIF4A1-201ENST00000614237 DCAF1Q9Y4B6 1507 aa19.62■□□□□ 0.73
SENP3-EIF4A1-201ENST00000614237 MYO15BQ96JP2 1530 aa19.23■□□□□ 0.67
SENP3-EIF4A1-201ENST00000614237 SHROOM4Q9ULL8 1493 aa19.08■□□□□ 0.64
SENP3-EIF4A1-201ENST00000614237 NACADO15069 1562 aa18.79■□□□□ 0.6
SENP3-EIF4A1-201ENST00000614237 ABCC9O60706 1549 aa18.71■□□□□ 0.59
SENP3-EIF4A1-201ENST00000614237 DCAF8L2P0C7V8 631 aa18.67■□□□□ 0.58
SENP3-EIF4A1-201ENST00000614237 SUPT5HO00267 1087 aaKnown RBP18.61■□□□□ 0.57
SENP3-EIF4A1-201ENST00000614237 SCRIBQ14160 1630 aa18.53■□□□□ 0.56
SENP3-EIF4A1-201ENST00000614237 RB1CC1Q8TDY2 1594 aa18.44■□□□□ 0.54
SENP3-EIF4A1-201ENST00000614237 RSF1Q96T23 1441 aaPredicted RBP18.36■□□□□ 0.53
SENP3-EIF4A1-201ENST00000614237 CHIC1Q5VXU3 224 aa18.32■□□□□ 0.52
SENP3-EIF4A1-201ENST00000614237 UNC13AQ9UPW8 1703 aa18.15■□□□□ 0.5
SENP3-EIF4A1-201ENST00000614237 BAZ1AQ9NRL2 1556 aaPredicted RBP18.1■□□□□ 0.49
SENP3-EIF4A1-201ENST00000614237 MROH2BQ7Z745 1585 aa18.08■□□□□ 0.49
SENP3-EIF4A1-201ENST00000614237 CECR2Q9BXF3 1484 aa18.07■□□□□ 0.48
SENP3-EIF4A1-201ENST00000614237 WIZO95785 1651 aa17.97■□□□□ 0.47
SENP3-EIF4A1-201ENST00000614237 SMARCA4P51532 1647 aa17.95■□□□□ 0.46
SENP3-EIF4A1-201ENST00000614237 PPARGC1BQ86YN6 1023 aaKnown RBP17.91■□□□□ 0.46
SENP3-EIF4A1-201ENST00000614237 EIF4G1Q04637 1599 aaKnown RBP17.91■□□□□ 0.46
SENP3-EIF4A1-201ENST00000614237 BICRAQ9NZM4 1560 aa17.91■□□□□ 0.46
SENP3-EIF4A1-201ENST00000614237 TOP2AP11388 1531 aaKnown RBP17.89■□□□□ 0.45
SENP3-EIF4A1-201ENST00000614237 PCGF6Q9BYE7 350 aa17.87■□□□□ 0.45
SENP3-EIF4A1-201ENST00000614237 PEG3Q9GZU2 1588 aa17.86■□□□□ 0.45
SENP3-EIF4A1-201ENST00000614237 SMARCA2P51531 1590 aa17.71■□□□□ 0.43
SENP3-EIF4A1-201ENST00000614237 HRCP23327 699 aa17.71■□□□□ 0.42
SENP3-EIF4A1-201ENST00000614237 CCDC88BA6NC98 1476 aa17.63■□□□□ 0.41
SENP3-EIF4A1-201ENST00000614237 TRIM41Q8WV44 630 aa17.59■□□□□ 0.41
SENP3-EIF4A1-201ENST00000614237 ATAD2BQ9ULI0 1458 aa17.48■□□□□ 0.39
SENP3-EIF4A1-201ENST00000614237 LOC105371045A0A1W2PR82 267 aa17.47■□□□□ 0.39
SENP3-EIF4A1-201ENST00000614237 EEA1Q15075 1411 aa17.38■□□□□ 0.37
SENP3-EIF4A1-201ENST00000614237 HMGXB3Q12766 1538 aa17.38■□□□□ 0.37
SENP3-EIF4A1-201ENST00000614237 PABPN1Q86U42 306 aaKnown RBP eCLIP17.35■□□□□ 0.373e-7■■□□□ 11.6
SENP3-EIF4A1-201ENST00000614237 BAZ1BQ9UIG0 1483 aaKnown RBP17.34■□□□□ 0.37
SENP3-EIF4A1-201ENST00000614237 EHMT2Q96KQ7 1210 aa17.34■□□□□ 0.37
SENP3-EIF4A1-201ENST00000614237 ABCC8Q09428 1581 aa17.33■□□□□ 0.36
SENP3-EIF4A1-201ENST00000614237 NCAPD3P42695 1498 aa17.31■□□□□ 0.36
SENP3-EIF4A1-201ENST00000614237 TRIM26Q12899 539 aaPredicted RBP17.26■□□□□ 0.35
SENP3-EIF4A1-201ENST00000614237 WRNQ14191 1432 aaPredicted RBP eCLIP17.21■□□□□ 0.353e-6■■■■□ 21.9
SENP3-EIF4A1-201ENST00000614237 BIVM-ERCC5R4GMW8 1640 aa17.18■□□□□ 0.34
SENP3-EIF4A1-201ENST00000614237 SYNJ1O43426 1573 aa17.17■□□□□ 0.34
SENP3-EIF4A1-201ENST00000614237 TOP2BQ02880 1626 aa17.15■□□□□ 0.34
SENP3-EIF4A1-201ENST00000614237 KIF21BO75037 1637 aa17.15■□□□□ 0.34
SENP3-EIF4A1-201ENST00000614237 PRDM2Q13029 1718 aa17.14■□□□□ 0.34
SENP3-EIF4A1-201ENST00000614237 TNIKQ9UKE5 1360 aa17.14■□□□□ 0.33
SENP3-EIF4A1-201ENST00000614237 SOGA1O94964 1423 aa17.11■□□□□ 0.33
SENP3-EIF4A1-201ENST00000614237 FAM9AQ8IZU1 332 aaPredicted RBP17.07■□□□□ 0.32
SENP3-EIF4A1-201ENST00000614237 GOLGA3Q08378 1498 aa17.06■□□□□ 0.32
SENP3-EIF4A1-201ENST00000614237 CFTRP13569 1480 aa17.05■□□□□ 0.32
SENP3-EIF4A1-201ENST00000614237 CSRNP3Q8WYN3 585 aa17.03■□□□□ 0.32
SENP3-EIF4A1-201ENST00000614237 CEP164Q9UPV0 1460 aa17.02■□□□□ 0.32
SENP3-EIF4A1-201ENST00000614237 RUSC2Q8N2Y8 1516 aa17.01■□□□□ 0.31
SENP3-EIF4A1-201ENST00000614237 CEP162Q5TB80 1403 aa16.99■□□□□ 0.31
SENP3-EIF4A1-201ENST00000614237 ERICH3Q5RHP9 1530 aa16.94■□□□□ 0.3
SENP3-EIF4A1-201ENST00000614237 SCAF1Q9H7N4 1312 aaKnown RBP16.93■□□□□ 0.3
SENP3-EIF4A1-201ENST00000614237 ZEB1P37275 1124 aaPredicted RBP16.91■□□□□ 0.3
SENP3-EIF4A1-201ENST00000614237 CUX1P39880 1505 aa16.9■□□□□ 0.3
SENP3-EIF4A1-201ENST00000614237 PRXQ9BXM0 1461 aa16.86■□□□□ 0.29
SENP3-EIF4A1-201ENST00000614237 CC2D2AQ9P2K1 1620 aa16.84■□□□□ 0.29
SENP3-EIF4A1-201ENST00000614237 TTBK1Q5TCY1 1321 aaPredicted RBP16.82■□□□□ 0.28
SENP3-EIF4A1-201ENST00000614237 PELP1Q8IZL8 1130 aaKnown RBP16.81■□□□□ 0.28
SENP3-EIF4A1-201ENST00000614237 CADPSQ9ULU8 1353 aa16.8■□□□□ 0.28
SENP3-EIF4A1-201ENST00000614237 RAPGEF2Q9Y4G8 1499 aa16.77■□□□□ 0.27
SENP3-EIF4A1-201ENST00000614237 KIF27Q86VH2 1401 aa16.74■□□□□ 0.27
SENP3-EIF4A1-201ENST00000614237 VPS8Q8N3P4 1428 aa16.73■□□□□ 0.27
SENP3-EIF4A1-201ENST00000614237 CLIP1P30622 1438 aa16.72■□□□□ 0.27
SENP3-EIF4A1-201ENST00000614237 UBTFP17480 764 aaKnown RBP16.68■□□□□ 0.26
SENP3-EIF4A1-201ENST00000614237 DNMBPQ6XZF7 1577 aa16.64■□□□□ 0.25
SENP3-EIF4A1-201ENST00000614237 LAMC3Q9Y6N6 1575 aa16.64■□□□□ 0.25
SENP3-EIF4A1-201ENST00000614237 YTHDC1Q96MU7 727 aaKnown RBP16.61■□□□□ 0.25
SENP3-EIF4A1-201ENST00000614237 FANCD2Q9BXW9 1451 aa16.59■□□□□ 0.25
SENP3-EIF4A1-201ENST00000614237 ARAP1Q96P48 1450 aa16.59■□□□□ 0.25
SENP3-EIF4A1-201ENST00000614237 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.58■□□□□ 0.24
SENP3-EIF4A1-201ENST00000614237 FGD5Q6ZNL6 1462 aa16.58■□□□□ 0.24
SENP3-EIF4A1-201ENST00000614237 ABCA10Q8WWZ4 1543 aa16.56■□□□□ 0.24
SENP3-EIF4A1-201ENST00000614237 NEUROD1Q13562 356 aa16.56■□□□□ 0.24
SENP3-EIF4A1-201ENST00000614237 GTF3C3Q9Y5Q9 886 aa16.56■□□□□ 0.24
SENP3-EIF4A1-201ENST00000614237 IGF1RP08069 1367 aa16.56■□□□□ 0.24
SENP3-EIF4A1-201ENST00000614237 WDR97A6NE52 1622 aa16.55■□□□□ 0.24
SENP3-EIF4A1-201ENST00000614237 MAP3K1Q13233 1512 aa16.55■□□□□ 0.24
SENP3-EIF4A1-201ENST00000614237 CUL7Q14999 1698 aa16.51■□□□□ 0.23
SENP3-EIF4A1-201ENST00000614237 TOPBP1Q92547 1522 aa16.51■□□□□ 0.23
SENP3-EIF4A1-201ENST00000614237 CUX2O14529 1486 aa16.51■□□□□ 0.23
SENP3-EIF4A1-201ENST00000614237 CCER1Q8TC90 406 aaPredicted RBP16.5■□□□□ 0.23
SENP3-EIF4A1-201ENST00000614237 ARHGAP35Q9NRY4 1499 aa16.48■□□□□ 0.23
SENP3-EIF4A1-201ENST00000614237 POLA1P09884 1462 aaPredicted RBP16.45■□□□□ 0.22
SENP3-EIF4A1-201ENST00000614237 CARMIL1Q5VZK9 1371 aa16.42■□□□□ 0.22
SENP3-EIF4A1-201ENST00000614237 ACIN1Q9UKV3 1341 aaKnown RBP16.42■□□□□ 0.22
SENP3-EIF4A1-201ENST00000614237 ABCA5Q8WWZ7 1642 aa16.42■□□□□ 0.22
SENP3-EIF4A1-201ENST00000614237 EFCAB5A4FU69 1503 aa16.4■□□□□ 0.22
SENP3-EIF4A1-201ENST00000614237 RRBP1Q9P2E9 1410 aaKnown RBP16.4■□□□□ 0.22
SENP3-EIF4A1-201ENST00000614237 CTTNBP2Q8WZ74 1663 aa16.38■□□□□ 0.21
SENP3-EIF4A1-201ENST00000614237 URB2Q14146 1524 aaKnown RBP16.38■□□□□ 0.21
SENP3-EIF4A1-201ENST00000614237 PDS5BQ9NTI5 1447 aa16.38■□□□□ 0.21
SENP3-EIF4A1-201ENST00000614237 DNAJC5BQ9UF47 199 aa16.37■□□□□ 0.21
SENP3-EIF4A1-201ENST00000614237 NESP48681 1621 aa16.37■□□□□ 0.21
SENP3-EIF4A1-201ENST00000614237 AQRO60306 1485 aaKnown RBP eCLIP16.35■□□□□ 0.212e-7■■■■□ 20.2
SENP3-EIF4A1-201ENST00000614237 CFAP43Q8NDM7 1665 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms