Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC24.77■■□□□ 1.56
SCUBE3Q8IX30 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SCUBE3Q8IX30 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SCUBE3Q8IX30 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
SCUBE3Q8IX30 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
SCUBE3Q8IX30 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SCUBE3Q8IX30 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC24.76■■□□□ 1.55
SCUBE3Q8IX30 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SCUBE3Q8IX30 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC24.75■■□□□ 1.55
SCUBE3Q8IX30 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC24.75■■□□□ 1.55
SCUBE3Q8IX30 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SCUBE3Q8IX30 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SCUBE3Q8IX30 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.74■■□□□ 1.55
SCUBE3Q8IX30 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SCUBE3Q8IX30 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
SCUBE3Q8IX30 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
SCUBE3Q8IX30 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SCUBE3Q8IX30 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SCUBE3Q8IX30 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
SCUBE3Q8IX30 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC24.73■■□□□ 1.55
SCUBE3Q8IX30 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SCUBE3Q8IX30 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SCUBE3Q8IX30 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SCUBE3Q8IX30 AC022616.5-201ENST00000518796 181 ntBASIC24.73■■□□□ 1.55
SCUBE3Q8IX30 MIR4508-201ENST00000584178 70 ntBASIC24.73■■□□□ 1.55
SCUBE3Q8IX30 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SCUBE3Q8IX30 AC138932.3-201ENST00000567634 1902 ntBASIC24.73■■□□□ 1.55
SCUBE3Q8IX30 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SCUBE3Q8IX30 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SCUBE3Q8IX30 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC24.72■■□□□ 1.55
SCUBE3Q8IX30 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
SCUBE3Q8IX30 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC24.72■■□□□ 1.55
SCUBE3Q8IX30 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.72■■□□□ 1.55
SCUBE3Q8IX30 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC24.72■■□□□ 1.55
SCUBE3Q8IX30 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC24.72■■□□□ 1.55
SCUBE3Q8IX30 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SCUBE3Q8IX30 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SCUBE3Q8IX30 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC24.71■■□□□ 1.55
SCUBE3Q8IX30 AC142381.3-201ENST00000568208 1670 ntBASIC24.71■■□□□ 1.55
SCUBE3Q8IX30 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
SCUBE3Q8IX30 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
SCUBE3Q8IX30 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC24.7■■□□□ 1.54
SCUBE3Q8IX30 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC24.7■■□□□ 1.54
SCUBE3Q8IX30 YBX1P4-201ENST00000392794 808 ntBASIC24.7■■□□□ 1.54
SCUBE3Q8IX30 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC24.7■■□□□ 1.54
SCUBE3Q8IX30 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
SCUBE3Q8IX30 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC24.7■■□□□ 1.54
SCUBE3Q8IX30 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
SCUBE3Q8IX30 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
SCUBE3Q8IX30 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.54
SCUBE3Q8IX30 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
SCUBE3Q8IX30 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
SCUBE3Q8IX30 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.69■■□□□ 1.54
SCUBE3Q8IX30 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
SCUBE3Q8IX30 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC24.69■■□□□ 1.54
SCUBE3Q8IX30 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC24.69■■□□□ 1.54
SCUBE3Q8IX30 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC24.69■■□□□ 1.54
SCUBE3Q8IX30 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
SCUBE3Q8IX30 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
SCUBE3Q8IX30 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC24.68■■□□□ 1.54
SCUBE3Q8IX30 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
SCUBE3Q8IX30 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC24.68■■□□□ 1.54
SCUBE3Q8IX30 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
SCUBE3Q8IX30 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
SCUBE3Q8IX30 RARRES2P1-201ENST00000474487 481 ntBASIC24.68■■□□□ 1.54
SCUBE3Q8IX30 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC24.68■■□□□ 1.54
SCUBE3Q8IX30 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
SCUBE3Q8IX30 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC24.67■■□□□ 1.54
SCUBE3Q8IX30 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC24.67■■□□□ 1.54
SCUBE3Q8IX30 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
SCUBE3Q8IX30 AC103724.3-201ENST00000564481 992 ntBASIC24.66■■□□□ 1.54
SCUBE3Q8IX30 SSSCA1-AS1-201ENST00000567594 614 ntBASIC24.66■■□□□ 1.54
SCUBE3Q8IX30 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC24.66■■□□□ 1.54
SCUBE3Q8IX30 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC24.66■■□□□ 1.54
SCUBE3Q8IX30 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC24.66■■□□□ 1.54
SCUBE3Q8IX30 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
SCUBE3Q8IX30 LSR-205ENST00000427250 1606 ntTSL 2 BASIC24.65■■□□□ 1.54
SCUBE3Q8IX30 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
SCUBE3Q8IX30 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SCUBE3Q8IX30 AC090877.2-201ENST00000558441 1738 ntBASIC24.64■■□□□ 1.54
SCUBE3Q8IX30 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
SCUBE3Q8IX30 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
SCUBE3Q8IX30 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC24.64■■□□□ 1.54
SCUBE3Q8IX30 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
SCUBE3Q8IX30 AC120024.1-201ENST00000562672 995 ntBASIC24.63■■□□□ 1.53
SCUBE3Q8IX30 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC24.63■■□□□ 1.53
SCUBE3Q8IX30 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC24.63■■□□□ 1.53
SCUBE3Q8IX30 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC24.63■■□□□ 1.53
SCUBE3Q8IX30 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
SCUBE3Q8IX30 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SCUBE3Q8IX30 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
SCUBE3Q8IX30 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SCUBE3Q8IX30 KRT18P24-201ENST00000344739 1156 ntBASIC24.62■■□□□ 1.53
SCUBE3Q8IX30 MIR6089-201ENST00000616698 64 ntBASIC24.62■■□□□ 1.53
SCUBE3Q8IX30 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
SCUBE3Q8IX30 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC24.62■■□□□ 1.53
SCUBE3Q8IX30 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
SCUBE3Q8IX30 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC24.61■■□□□ 1.53
SCUBE3Q8IX30 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
SCUBE3Q8IX30 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms