Protein–RNA interactions for Protein: Q9NY35

CLDND1, Claudin domain-containing protein 1, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1Q9NY35 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.39■■■□□ 2.62
CLDND1Q9NY35 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.36■■■□□ 2.61
CLDND1Q9NY35 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CLDND1Q9NY35 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC31.34■■■□□ 2.61
CLDND1Q9NY35 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.33■■■□□ 2.61
CLDND1Q9NY35 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.32■■■□□ 2.6
CLDND1Q9NY35 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC31.29■■■□□ 2.6
CLDND1Q9NY35 RARRES2P7-201ENST00000567349 469 ntBASIC31.28■■■□□ 2.6
CLDND1Q9NY35 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CLDND1Q9NY35 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
CLDND1Q9NY35 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.22■■■□□ 2.59
CLDND1Q9NY35 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC31.17■■■□□ 2.58
CLDND1Q9NY35 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CLDND1Q9NY35 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.1■■■□□ 2.57
CLDND1Q9NY35 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.09■■■□□ 2.57
CLDND1Q9NY35 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC31.09■■■□□ 2.57
CLDND1Q9NY35 AC097358.2-201ENST00000607541 1159 ntBASIC31.06■■■□□ 2.56
CLDND1Q9NY35 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CLDND1Q9NY35 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.05■■■□□ 2.56
CLDND1Q9NY35 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CLDND1Q9NY35 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.97■■■□□ 2.55
CLDND1Q9NY35 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.93■■■□□ 2.54
CLDND1Q9NY35 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.93■■■□□ 2.54
CLDND1Q9NY35 RPS2P35-201ENST00000443417 897 ntBASIC30.92■■■□□ 2.54
CLDND1Q9NY35 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.91■■■□□ 2.54
CLDND1Q9NY35 SETD8P1-201ENST00000623146 1180 ntBASIC30.91■■■□□ 2.54
CLDND1Q9NY35 AC136428.2-201ENST00000563187 214 ntBASIC30.9■■■□□ 2.54
CLDND1Q9NY35 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.89■■■□□ 2.54
CLDND1Q9NY35 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
CLDND1Q9NY35 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CLDND1Q9NY35 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CLDND1Q9NY35 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CLDND1Q9NY35 SUZ12P1-203ENST00000578195 985 ntBASIC30.83■■■□□ 2.53
CLDND1Q9NY35 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.77■■■□□ 2.52
CLDND1Q9NY35 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.75■■■□□ 2.51
CLDND1Q9NY35 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.73■■■□□ 2.51
CLDND1Q9NY35 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CLDND1Q9NY35 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC30.72■■■□□ 2.51
CLDND1Q9NY35 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.7■■■□□ 2.51
CLDND1Q9NY35 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
CLDND1Q9NY35 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.69■■■□□ 2.5
CLDND1Q9NY35 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CLDND1Q9NY35 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CLDND1Q9NY35 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.69■■■□□ 2.5
CLDND1Q9NY35 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.69■■■□□ 2.5
CLDND1Q9NY35 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
CLDND1Q9NY35 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CLDND1Q9NY35 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.65■■■□□ 2.5
CLDND1Q9NY35 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CLDND1Q9NY35 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.6■■■□□ 2.49
CLDND1Q9NY35 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CLDND1Q9NY35 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.59■■■□□ 2.49
CLDND1Q9NY35 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC30.59■■■□□ 2.49
CLDND1Q9NY35 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
CLDND1Q9NY35 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CLDND1Q9NY35 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.52■■■□□ 2.48
CLDND1Q9NY35 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.51■■■□□ 2.48
CLDND1Q9NY35 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.47■■■□□ 2.47
CLDND1Q9NY35 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC30.45■■■□□ 2.46
CLDND1Q9NY35 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CLDND1Q9NY35 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CLDND1Q9NY35 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.42■■■□□ 2.46
CLDND1Q9NY35 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
CLDND1Q9NY35 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CLDND1Q9NY35 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CLDND1Q9NY35 AL162393.1-201ENST00000437852 946 ntBASIC30.34■■■□□ 2.45
CLDND1Q9NY35 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.33■■■□□ 2.45
CLDND1Q9NY35 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CLDND1Q9NY35 CAHM-201ENST00000604200 896 ntBASIC30.3■■■□□ 2.44
CLDND1Q9NY35 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CLDND1Q9NY35 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CLDND1Q9NY35 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CLDND1Q9NY35 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.24■■■□□ 2.43
CLDND1Q9NY35 AP006261.1-201ENST00000584783 668 ntBASIC30.24■■■□□ 2.43
CLDND1Q9NY35 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.24■■■□□ 2.43
CLDND1Q9NY35 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.24■■■□□ 2.43
CLDND1Q9NY35 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CLDND1Q9NY35 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.21■■■□□ 2.43
CLDND1Q9NY35 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.2■■■□□ 2.42
CLDND1Q9NY35 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.16■■■□□ 2.42
CLDND1Q9NY35 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CLDND1Q9NY35 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CLDND1Q9NY35 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CLDND1Q9NY35 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.41
CLDND1Q9NY35 AL391121.1-201ENST00000607967 1349 ntBASIC30.12■■■□□ 2.41
CLDND1Q9NY35 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
CLDND1Q9NY35 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.11■■■□□ 2.41
CLDND1Q9NY35 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CLDND1Q9NY35 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
CLDND1Q9NY35 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.1■■■□□ 2.41
CLDND1Q9NY35 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
CLDND1Q9NY35 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.09■■■□□ 2.41
CLDND1Q9NY35 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
CLDND1Q9NY35 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.07■■■□□ 2.4
CLDND1Q9NY35 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CLDND1Q9NY35 MIR7108-201ENST00000614319 87 ntBASIC30.05■■■□□ 2.4
CLDND1Q9NY35 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CLDND1Q9NY35 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.03■■■□□ 2.4
CLDND1Q9NY35 AC145285.7-201ENST00000614819 1539 ntBASIC30.02■■■□□ 2.4
CLDND1Q9NY35 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.01■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms