Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC24.53■■□□□ 1.52
CSPG4Q6UVK1 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC24.52■■□□□ 1.52
CSPG4Q6UVK1 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC24.52■■□□□ 1.52
CSPG4Q6UVK1 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC24.52■■□□□ 1.52
CSPG4Q6UVK1 RARRES2P7-201ENST00000567349 469 ntBASIC24.51■■□□□ 1.51
CSPG4Q6UVK1 AL031258.1-201ENST00000623562 325 ntBASIC24.49■■□□□ 1.51
CSPG4Q6UVK1 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CSPG4Q6UVK1 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC24.46■■□□□ 1.51
CSPG4Q6UVK1 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC24.46■■□□□ 1.51
CSPG4Q6UVK1 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC24.45■■□□□ 1.51
CSPG4Q6UVK1 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CSPG4Q6UVK1 RPS2P35-201ENST00000443417 897 ntBASIC24.45■■□□□ 1.5
CSPG4Q6UVK1 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CSPG4Q6UVK1 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC24.44■■□□□ 1.5
CSPG4Q6UVK1 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
CSPG4Q6UVK1 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.48
CSPG4Q6UVK1 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC24.3■■□□□ 1.48
CSPG4Q6UVK1 AC097358.2-201ENST00000607541 1159 ntBASIC24.3■■□□□ 1.48
CSPG4Q6UVK1 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC24.3■■□□□ 1.48
CSPG4Q6UVK1 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CSPG4Q6UVK1 AC136428.2-201ENST00000563187 214 ntBASIC24.27■■□□□ 1.48
CSPG4Q6UVK1 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC24.24■■□□□ 1.47
CSPG4Q6UVK1 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC24.24■■□□□ 1.47
CSPG4Q6UVK1 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
CSPG4Q6UVK1 SUZ12P1-203ENST00000578195 985 ntBASIC24.22■■□□□ 1.47
CSPG4Q6UVK1 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CSPG4Q6UVK1 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC24.2■■□□□ 1.47
CSPG4Q6UVK1 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.46
CSPG4Q6UVK1 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CSPG4Q6UVK1 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC24.19■■□□□ 1.46
CSPG4Q6UVK1 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC24.18■■□□□ 1.46
CSPG4Q6UVK1 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC24.18■■□□□ 1.46
CSPG4Q6UVK1 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC24.16■■□□□ 1.46
CSPG4Q6UVK1 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CSPG4Q6UVK1 SETD8P1-201ENST00000623146 1180 ntBASIC24.13■■□□□ 1.45
CSPG4Q6UVK1 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CSPG4Q6UVK1 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CSPG4Q6UVK1 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC24.1■■□□□ 1.45
CSPG4Q6UVK1 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC24.09■■□□□ 1.45
CSPG4Q6UVK1 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC24.09■■□□□ 1.45
CSPG4Q6UVK1 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC24.08■■□□□ 1.45
CSPG4Q6UVK1 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC24.07■■□□□ 1.44
CSPG4Q6UVK1 EBPL-203ENST00000378270 579 ntTSL 2 BASIC24.06■■□□□ 1.44
CSPG4Q6UVK1 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CSPG4Q6UVK1 KLF16-203ENST00000592313 508 ntTSL 3 BASIC24.06■■□□□ 1.44
CSPG4Q6UVK1 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CSPG4Q6UVK1 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
CSPG4Q6UVK1 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CSPG4Q6UVK1 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CSPG4Q6UVK1 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
CSPG4Q6UVK1 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC23.99■■□□□ 1.43
CSPG4Q6UVK1 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC23.99■■□□□ 1.43
CSPG4Q6UVK1 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC23.99■■□□□ 1.43
CSPG4Q6UVK1 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CSPG4Q6UVK1 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC23.88■■□□□ 1.41
CSPG4Q6UVK1 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC23.88■■□□□ 1.41
CSPG4Q6UVK1 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CSPG4Q6UVK1 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
CSPG4Q6UVK1 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CSPG4Q6UVK1 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC23.81■■□□□ 1.4
CSPG4Q6UVK1 NRG1-221ENST00000614767 762 ntTSL 5 BASIC23.79■■□□□ 1.4
CSPG4Q6UVK1 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC23.77■■□□□ 1.4
CSPG4Q6UVK1 AL162393.1-201ENST00000437852 946 ntBASIC23.77■■□□□ 1.4
CSPG4Q6UVK1 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CSPG4Q6UVK1 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CSPG4Q6UVK1 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
CSPG4Q6UVK1 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CSPG4Q6UVK1 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CSPG4Q6UVK1 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
CSPG4Q6UVK1 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CSPG4Q6UVK1 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
CSPG4Q6UVK1 AP006261.1-201ENST00000584783 668 ntBASIC23.71■■□□□ 1.39
CSPG4Q6UVK1 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CSPG4Q6UVK1 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CSPG4Q6UVK1 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
CSPG4Q6UVK1 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CSPG4Q6UVK1 CAHM-201ENST00000604200 896 ntBASIC23.66■■□□□ 1.38
CSPG4Q6UVK1 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CSPG4Q6UVK1 AL391121.1-201ENST00000607967 1349 ntBASIC23.65■■□□□ 1.38
CSPG4Q6UVK1 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC23.64■■□□□ 1.38
CSPG4Q6UVK1 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
CSPG4Q6UVK1 HNRNPLP2-201ENST00000568980 1570 ntBASIC23.63■■□□□ 1.37
CSPG4Q6UVK1 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
CSPG4Q6UVK1 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.62■■□□□ 1.37
CSPG4Q6UVK1 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CSPG4Q6UVK1 ABHD17AP4-201ENST00000411545 909 ntBASIC23.6■■□□□ 1.37
CSPG4Q6UVK1 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CSPG4Q6UVK1 HLA-V-202ENST00000446817 847 ntBASIC23.59■■□□□ 1.37
CSPG4Q6UVK1 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
CSPG4Q6UVK1 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CSPG4Q6UVK1 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
CSPG4Q6UVK1 MIR7108-201ENST00000614319 87 ntBASIC23.55■■□□□ 1.36
CSPG4Q6UVK1 AC145285.7-201ENST00000614819 1539 ntBASIC23.54■■□□□ 1.36
CSPG4Q6UVK1 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CSPG4Q6UVK1 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CSPG4Q6UVK1 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC23.54■■□□□ 1.36
CSPG4Q6UVK1 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC23.53■■□□□ 1.36
CSPG4Q6UVK1 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
CSPG4Q6UVK1 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CSPG4Q6UVK1 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms