Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PRKDCP78527 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PRKDCP78527 AL031258.1-201ENST00000623562 325 ntBASIC22.23■■□□□ 1.15
PRKDCP78527 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PRKDCP78527 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PRKDCP78527 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PRKDCP78527 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PRKDCP78527 AC097358.2-201ENST00000607541 1159 ntBASIC22.11■■□□□ 1.13
PRKDCP78527 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PRKDCP78527 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC22.09■■□□□ 1.13
PRKDCP78527 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
PRKDCP78527 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PRKDCP78527 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC22.03■■□□□ 1.12
PRKDCP78527 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
PRKDCP78527 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PRKDCP78527 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PRKDCP78527 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PRKDCP78527 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.95■■□□□ 1.11
PRKDCP78527 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
PRKDCP78527 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.94■■□□□ 1.1
PRKDCP78527 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC21.93■■□□□ 1.1
PRKDCP78527 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC21.92■■□□□ 1.1
PRKDCP78527 AL162393.1-201ENST00000437852 946 ntBASIC21.92■■□□□ 1.1
PRKDCP78527 SETD8P1-201ENST00000623146 1180 ntBASIC21.92■■□□□ 1.1
PRKDCP78527 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.91■■□□□ 1.1
PRKDCP78527 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PRKDCP78527 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC21.9■■□□□ 1.1
PRKDCP78527 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
PRKDCP78527 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
PRKDCP78527 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
PRKDCP78527 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PRKDCP78527 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.8■■□□□ 1.08
PRKDCP78527 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PRKDCP78527 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PRKDCP78527 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PRKDCP78527 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
PRKDCP78527 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21.77■■□□□ 1.08
PRKDCP78527 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PRKDCP78527 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PRKDCP78527 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PRKDCP78527 HLA-V-202ENST00000446817 847 ntBASIC21.7■■□□□ 1.07
PRKDCP78527 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC21.7■■□□□ 1.06
PRKDCP78527 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PRKDCP78527 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.67■■□□□ 1.06
PRKDCP78527 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC21.67■■□□□ 1.06
PRKDCP78527 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC21.65■■□□□ 1.06
PRKDCP78527 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC21.65■■□□□ 1.06
PRKDCP78527 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
PRKDCP78527 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC21.64■■□□□ 1.05
PRKDCP78527 EBPL-203ENST00000378270 579 ntTSL 2 BASIC21.63■■□□□ 1.05
PRKDCP78527 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PRKDCP78527 ABHD17AP4-201ENST00000411545 909 ntBASIC21.62■■□□□ 1.05
PRKDCP78527 MIR7108-201ENST00000614319 87 ntBASIC21.62■■□□□ 1.05
PRKDCP78527 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
PRKDCP78527 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.59■■□□□ 1.05
PRKDCP78527 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
PRKDCP78527 AP006261.1-201ENST00000584783 668 ntBASIC21.57■■□□□ 1.04
PRKDCP78527 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PRKDCP78527 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PRKDCP78527 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC21.56■■□□□ 1.04
PRKDCP78527 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PRKDCP78527 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
PRKDCP78527 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.54■■□□□ 1.04
PRKDCP78527 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC21.53■■□□□ 1.04
PRKDCP78527 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.5■■□□□ 1.03
PRKDCP78527 CAHM-201ENST00000604200 896 ntBASIC21.5■■□□□ 1.03
PRKDCP78527 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21.49■■□□□ 1.03
PRKDCP78527 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PRKDCP78527 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PRKDCP78527 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PRKDCP78527 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRKDCP78527 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRKDCP78527 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRKDCP78527 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRKDCP78527 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRKDCP78527 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRKDCP78527 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC21.45■■□□□ 1.02
PRKDCP78527 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
PRKDCP78527 AL391121.1-201ENST00000607967 1349 ntBASIC21.44■■□□□ 1.02
PRKDCP78527 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PRKDCP78527 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PRKDCP78527 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PRKDCP78527 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PRKDCP78527 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PRKDCP78527 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.38■■□□□ 1.01
PRKDCP78527 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC21.37■■□□□ 1.01
PRKDCP78527 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.36■■□□□ 1.01
PRKDCP78527 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC21.35■■□□□ 1.01
PRKDCP78527 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
PRKDCP78527 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC21.31■■□□□ 1
PRKDCP78527 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PRKDCP78527 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.29■■□□□ 1
PRKDCP78527 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.28■■□□□ 1
PRKDCP78527 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.26■□□□□ 0.99
PRKDCP78527 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
PRKDCP78527 AC087741.3-201ENST00000624270 1347 ntBASIC21.25■□□□□ 0.99
PRKDCP78527 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.25■□□□□ 0.99
PRKDCP78527 MIR3665-201ENST00000578708 105 ntBASIC21.25■□□□□ 0.99
PRKDCP78527 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.24■□□□□ 0.99
PRKDCP78527 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms