Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.83■■■□□ 2.372e-8■□□□□ 10.5
LIN28BQ6ZN17 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.762e-8■□□□□ 10.5
LIN28BQ6ZN17 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.352e-8■□□□□ 10.5
LIN28BQ6ZN17 GREB1-204ENST00000381486 8484 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.691e-6■□□□□ 10.5
LIN28BQ6ZN17 GREB1-201ENST00000234142 8444 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.691e-6■□□□□ 10.5
LIN28BQ6ZN17 RPS4X-201ENST00000316084 1526 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.953e-15■□□□□ 10.5
LIN28BQ6ZN17 RPS4X-204ENST00000486733 1820 ntTSL 58.52□□□□□ -1.053e-15■□□□□ 10.5
LIN28BQ6ZN17 TGFB1-202ENST00000597453 392 ntTSL 1 (best)17.41■□□□□ 0.387e-7■□□□□ 10.5
LIN28BQ6ZN17 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.037e-7■□□□□ 10.5
LIN28BQ6ZN17 FGB-205ENST00000498375 970 ntTSL 213.39□□□□□ -0.276e-12■□□□□ 10.5
LIN28BQ6ZN17 FGB-204ENST00000497097 574 ntTSL 1 (best)12.68□□□□□ -0.386e-12■□□□□ 10.5
LIN28BQ6ZN17 FGB-202ENST00000425838 565 ntTSL 412.3□□□□□ -0.446e-12■□□□□ 10.5
LIN28BQ6ZN17 FGB-203ENST00000473984 665 ntTSL 211.65□□□□□ -0.546e-12■□□□□ 10.5
LIN28BQ6ZN17 CSNK1A1-201ENST00000261798 6067 ntAPPRIS ALT1 TSL 1 (best) BASIC9.93□□□□□ -0.826e-12■□□□□ 10.5
LIN28BQ6ZN17 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.64□□□□□ -1.356e-12■□□□□ 10.5
LIN28BQ6ZN17 PRAME-209ENST00000439106 891 ntAPPRIS ALT2 TSL 315.75■□□□□ 0.113e-7■□□□□ 10.5
LIN28BQ6ZN17 NOP53-211ENST00000600266 666 ntTSL 219.3■□□□□ 0.687e-11■□□□□ 10.5
LIN28BQ6ZN17 RBM14-207ENST00000461478 693 ntTSL 223.87■■□□□ 1.413e-10■□□□□ 10.5
LIN28BQ6ZN17 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.93e-10■□□□□ 10.5
LIN28BQ6ZN17 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.88■□□□□ 0.773e-10■□□□□ 10.5
LIN28BQ6ZN17 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.9■□□□□ 0.623e-10■□□□□ 10.5
LIN28BQ6ZN17 RBM14-RBM4-202ENST00000421355 2034 ntTSL 218.85■□□□□ 0.613e-10■□□□□ 10.5
LIN28BQ6ZN17 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC15.56■□□□□ 0.083e-10■□□□□ 10.5
LIN28BQ6ZN17 RBM14-205ENST00000443702 732 ntTSL 3 BASIC14.7□□□□□ -0.063e-10■□□□□ 10.5
LIN28BQ6ZN17 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.163e-10■□□□□ 10.5
LIN28BQ6ZN17 RBM14-203ENST00000409372 876 ntTSL 2 BASIC13.78□□□□□ -0.23e-10■□□□□ 10.5
LIN28BQ6ZN17 RBM14-RBM4-204ENST00000511114 523 ntTSL 413.78□□□□□ -0.23e-10■□□□□ 10.5
LIN28BQ6ZN17 RBM14-208ENST00000496694 562 ntTSL 57.5□□□□□ -1.213e-10■□□□□ 10.5
LIN28BQ6ZN17 MSH5-210ENST00000463094 796 ntTSL 222.53■■□□□ 1.28e-8■□□□□ 10.5
LIN28BQ6ZN17 MSH5-215ENST00000482280 944 ntTSL 222.53■■□□□ 1.28e-8■□□□□ 10.5
LIN28BQ6ZN17 MSH5-207ENST00000425703 694 ntTSL 520.79■□□□□ 0.928e-8■□□□□ 10.5
LIN28BQ6ZN17 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.018e-8■□□□□ 10.5
LIN28BQ6ZN17 MSH5-206ENST00000423982 2706 ntTSL 514.28□□□□□ -0.128e-8■□□□□ 10.5
LIN28BQ6ZN17 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.168e-8■□□□□ 10.5
LIN28BQ6ZN17 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC13.99□□□□□ -0.178e-8■□□□□ 10.5
LIN28BQ6ZN17 MSH5-204ENST00000375755 3094 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.378e-8■□□□□ 10.5
LIN28BQ6ZN17 MSH5-SAPCD1-207ENST00000493662 3991 ntAPPRIS P5 TSL 1 (best) BASIC10.77□□□□□ -0.688e-8■□□□□ 10.5
LIN28BQ6ZN17 MSH5-211ENST00000463144 2296 ntTSL 510.38□□□□□ -0.758e-8■□□□□ 10.5
LIN28BQ6ZN17 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.1■□□□□ 0.497e-7■□□□□ 10.5
LIN28BQ6ZN17 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.197e-7■□□□□ 10.5
LIN28BQ6ZN17 STMN1-206ENST00000455785 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.137e-7■□□□□ 10.5
LIN28BQ6ZN17 LRPAP1-201ENST00000296325 1078 ntTSL 1 (best)20.96■□□□□ 0.952e-11■□□□□ 10.5
LIN28BQ6ZN17 FN1-225ENST00000494446 676 ntTSL 28.18□□□□□ -1.14e-56■□□□□ 10.5
LIN28BQ6ZN17 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.263e-6■□□□□ 10.5
LIN28BQ6ZN17 ATP5F1-205ENST00000483994 678 ntTSL 2 BASIC11.99□□□□□ -0.493e-6■□□□□ 10.5
LIN28BQ6ZN17 ATP5F1-201ENST00000369721 1040 ntTSL 29.03□□□□□ -0.963e-6■□□□□ 10.5
LIN28BQ6ZN17 ATP5F1-204ENST00000468818 859 ntTSL 35.1□□□□□ -1.593e-6■□□□□ 10.5
LIN28BQ6ZN17 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.743e-7■□□□□ 10.5
LIN28BQ6ZN17 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.923e-7■□□□□ 10.5
LIN28BQ6ZN17 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.923e-7■□□□□ 10.5
LIN28BQ6ZN17 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.733e-7■□□□□ 10.5
LIN28BQ6ZN17 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.733e-7■□□□□ 10.5
LIN28BQ6ZN17 SLC16A3-213ENST00000582715 279 ntTSL 517.73■□□□□ 0.433e-7■□□□□ 10.5
LIN28BQ6ZN17 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.033e-7■□□□□ 10.5
LIN28BQ6ZN17 RPS4X-202ENST00000373626 594 ntTSL 39.12□□□□□ -0.953e-15■□□□□ 10.5
LIN28BQ6ZN17 NPLOC4-217ENST00000574897 2365 ntTSL 223.92■■□□□ 1.425e-8■□□□□ 10.5
LIN28BQ6ZN17 NPLOC4-202ENST00000374747 5538 ntTSL 2 BASIC11.83□□□□□ -0.525e-8■□□□□ 10.5
LIN28BQ6ZN17 NPLOC4-212ENST00000573328 428 ntTSL 210.99□□□□□ -0.655e-8■□□□□ 10.5
LIN28BQ6ZN17 NPLOC4-216ENST00000574344 573 ntTSL 410.99□□□□□ -0.655e-8■□□□□ 10.5
LIN28BQ6ZN17 NPLOC4-204ENST00000570324 414 ntTSL 310.18□□□□□ -0.785e-8■□□□□ 10.5
LIN28BQ6ZN17 FGFR1-239ENST00000533619 540 ntTSL 419■□□□□ 0.631e-7■□□□□ 10.5
LIN28BQ6ZN17 FGFR1-230ENST00000527114 1499 ntTSL 514.83□□□□□ -0.031e-7■□□□□ 10.5
LIN28BQ6ZN17 FGFR1-236ENST00000531196 842 ntTSL 312.45□□□□□ -0.421e-7■□□□□ 10.5
LIN28BQ6ZN17 CCT8-203ENST00000432178 556 ntTSL 23.46□□□□□ -1.862e-6■□□□□ 10.5
LIN28BQ6ZN17 A2M-210ENST00000542567 563 ntTSL 47.85□□□□□ -1.154e-38■□□□□ 10.5
LIN28BQ6ZN17 EIF3H-203ENST00000518034 1047 ntTSL 212.16□□□□□ -0.465e-7■□□□□ 10.5
LIN28BQ6ZN17 EIF3H-204ENST00000518949 843 ntTSL 311.05□□□□□ -0.645e-7■□□□□ 10.5
LIN28BQ6ZN17 EIF3H-205ENST00000518995 731 ntTSL 311.05□□□□□ -0.645e-7■□□□□ 10.5
LIN28BQ6ZN17 EIF3H-212ENST00000611080 1265 ntTSL 5 BASIC10.24□□□□□ -0.775e-7■□□□□ 10.5
LIN28BQ6ZN17 EIF3H-211ENST00000522800 635 ntTSL 39.56□□□□□ -0.885e-7■□□□□ 10.5
LIN28BQ6ZN17 EIF3H-201ENST00000276682 2041 ntTSL 2 BASIC9.28□□□□□ -0.925e-7■□□□□ 10.5
LIN28BQ6ZN17 EIF3H-206ENST00000519046 488 ntTSL 39.18□□□□□ -0.945e-7■□□□□ 10.5
LIN28BQ6ZN17 EIF3H-210ENST00000522453 518 ntTSL 39.15□□□□□ -0.945e-7■□□□□ 10.5
LIN28BQ6ZN17 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.565e-7■□□□□ 10.5
LIN28BQ6ZN17 EIF3H-202ENST00000517974 594 ntTSL 24.4□□□□□ -1.715e-7■□□□□ 10.5
LIN28BQ6ZN17 RPL13-209ENST00000491523 698 ntTSL 325.15■■□□□ 1.627e-20■□□□□ 10.5
LIN28BQ6ZN17 RPL13-203ENST00000399461 879 ntTSL 225.02■■□□□ 1.67e-20■□□□□ 10.5
LIN28BQ6ZN17 RPL13-212ENST00000563749 2367 nt21.77■■□□□ 1.087e-20■□□□□ 10.5
LIN28BQ6ZN17 RPL13-205ENST00000467736 528 ntTSL 319■□□□□ 0.637e-20■□□□□ 10.5
LIN28BQ6ZN17 RPL13-207ENST00000484610 924 ntTSL 516.76■□□□□ 0.277e-20■□□□□ 10.5
LIN28BQ6ZN17 RPL13-211ENST00000563270 554 ntTSL 416.52■□□□□ 0.247e-20■□□□□ 10.5
LIN28BQ6ZN17 RPL13-213ENST00000565571 568 ntTSL 216.45■□□□□ 0.227e-20■□□□□ 10.5
LIN28BQ6ZN17 PKM-221ENST00000568743 580 ntTSL 1 (best)11.16□□□□□ -0.621e-10■□□□□ 10.5
LIN28BQ6ZN17 RFC4-202ENST00000392481 1448 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.283e-11■□□□□ 10.5
LIN28BQ6ZN17 RFC4-201ENST00000296273 1384 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.453e-11■□□□□ 10.5
LIN28BQ6ZN17 RFC4-214ENST00000494047 1393 ntTSL 211.28□□□□□ -0.63e-11■□□□□ 10.5
LIN28BQ6ZN17 RFC4-207ENST00000433496 1111 ntTSL 5 BASIC10.95□□□□□ -0.663e-11■□□□□ 10.5
LIN28BQ6ZN17 RFC4-204ENST00000417876 479 ntTSL 24.8□□□□□ -1.643e-11■□□□□ 10.5
LIN28BQ6ZN17 RFC4-212ENST00000479307 1043 ntTSL 24.69□□□□□ -1.663e-11■□□□□ 10.5
LIN28BQ6ZN17 RFC4-211ENST00000460408 628 ntTSL 23.29□□□□□ -1.883e-11■□□□□ 10.5
LIN28BQ6ZN17 RBM39-237ENST00000492779 2316 ntTSL 26.85□□□□□ -1.311e-8■□□□□ 10.5
LIN28BQ6ZN17 RBM39-217ENST00000448303 1008 ntTSL 54.04□□□□□ -1.761e-8■□□□□ 10.5
LIN28BQ6ZN17 GOLPH3-202ENST00000503610 1074 ntTSL 336.71■■■■□ 3.472e-8■□□□□ 10.5
LIN28BQ6ZN17 GOLPH3-203ENST00000512668 665 ntTSL 325.59■■□□□ 1.692e-8■□□□□ 10.5
LIN28BQ6ZN17 AC084082.1-201ENST00000520930 451 ntTSL 516.47■□□□□ 0.234e-9■□□□□ 10.5
LIN28BQ6ZN17 AC084082.1-202ENST00000517961 956 ntTSL 2 BASIC12.78□□□□□ -0.364e-9■□□□□ 10.5
LIN28BQ6ZN17 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.22■□□□□ 0.031e-12■□□□□ 10.5
LIN28BQ6ZN17 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.11e-12■□□□□ 10.5
LIN28BQ6ZN17 KDELR2-205ENST00000463747 376 ntTSL 512.44□□□□□ -0.421e-12■□□□□ 10.5
LIN28BQ6ZN17 KDELR2-203ENST00000454368 2478 ntTSL 211.29□□□□□ -0.61e-12■□□□□ 10.5
Retrieved 100 of 21,972 protein–RNA pairs in 263 ms