RNA–Protein interactions for RNA: ENST00000221930.5

TGFB1-201, Transcript of transforming growth factor beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TGFB1, Length 2,769 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFB1-201ENST00000221930 NISCHQ9Y2I1 1504 aa32.34■■■□□ 2.77
TGFB1-201ENST00000221930 CCDC180Q9P1Z9 1646 aa28.25■■■□□ 2.11
TGFB1-201ENST00000221930 ZCCHC6Q5VYS8 1495 aaKnown RBP27.3■■□□□ 1.96
TGFB1-201ENST00000221930 SHROOM4Q9ULL8 1493 aa27.09■■□□□ 1.93
TGFB1-201ENST00000221930 DCAF1Q9Y4B6 1507 aa26.99■■□□□ 1.91
TGFB1-201ENST00000221930 SUPT5HO00267 1087 aaKnown RBP26.58■■□□□ 1.85
TGFB1-201ENST00000221930 MYO15BQ96JP2 1530 aa26.56■■□□□ 1.84
TGFB1-201ENST00000221930 DCAF8L2P0C7V8 631 aa26.39■■□□□ 1.82
TGFB1-201ENST00000221930 NACADO15069 1562 aa26.11■■□□□ 1.77
TGFB1-201ENST00000221930 ABCC9O60706 1549 aa25.83■■□□□ 1.73
TGFB1-201ENST00000221930 CHIC1Q5VXU3 224 aa25.77■■□□□ 1.72
TGFB1-201ENST00000221930 RB1CC1Q8TDY2 1594 aa25.73■■□□□ 1.71
TGFB1-201ENST00000221930 SCRIBQ14160 1630 aa25.67■■□□□ 1.7
TGFB1-201ENST00000221930 UNC13AQ9UPW8 1703 aa25.22■■□□□ 1.63
TGFB1-201ENST00000221930 RSF1Q96T23 1441 aaPredicted RBP25.15■■□□□ 1.62
TGFB1-201ENST00000221930 LOC105371045A0A1W2PR82 267 aa25.1■■□□□ 1.61
TGFB1-201ENST00000221930 PCGF6Q9BYE7 350 aa25.06■■□□□ 1.6
TGFB1-201ENST00000221930 BAZ1AQ9NRL2 1556 aaPredicted RBP25■■□□□ 1.59
TGFB1-201ENST00000221930 HRCP23327 699 aa24.97■■□□□ 1.59
TGFB1-201ENST00000221930 PELP1Q8IZL8 1130 aaKnown RBP24.97■■□□□ 1.59
TGFB1-201ENST00000221930 CECR2Q9BXF3 1484 aa24.9■■□□□ 1.58
TGFB1-201ENST00000221930 MROH2BQ7Z745 1585 aa24.88■■□□□ 1.57
TGFB1-201ENST00000221930 BICRAQ9NZM4 1560 aa24.87■■□□□ 1.57
TGFB1-201ENST00000221930 SMARCA4P51532 1647 aa24.8■■□□□ 1.56
TGFB1-201ENST00000221930 WIZO95785 1651 aa24.72■■□□□ 1.55
TGFB1-201ENST00000221930 TRIM41Q8WV44 630 aa24.7■■□□□ 1.54
TGFB1-201ENST00000221930 PEG3Q9GZU2 1588 aa24.63■■□□□ 1.53
TGFB1-201ENST00000221930 TOP2AP11388 1531 aaKnown RBP24.62■■□□□ 1.53
TGFB1-201ENST00000221930 FAM9AQ8IZU1 332 aaPredicted RBP24.59■■□□□ 1.53
TGFB1-201ENST00000221930 PPARGC1BQ86YN6 1023 aaKnown RBP24.58■■□□□ 1.52
TGFB1-201ENST00000221930 TRIM26Q12899 539 aaPredicted RBP24.48■■□□□ 1.51
TGFB1-201ENST00000221930 EHMT2Q96KQ7 1210 aa24.46■■□□□ 1.51
TGFB1-201ENST00000221930 EIF4G1Q04637 1599 aaKnown RBP24.42■■□□□ 1.5
TGFB1-201ENST00000221930 MYT1Q01538 1121 aa24.38■■□□□ 1.49
TGFB1-201ENST00000221930 SMARCA2P51531 1590 aa24.35■■□□□ 1.49
TGFB1-201ENST00000221930 PABPN1Q86U42 306 aaKnown RBP eCLIP24.29■■□□□ 1.48
TGFB1-201ENST00000221930 CCDC88BA6NC98 1476 aa24.23■■□□□ 1.47
TGFB1-201ENST00000221930 ATAD2BQ9ULI0 1458 aa24.21■■□□□ 1.47
TGFB1-201ENST00000221930 HMGXB3Q12766 1538 aa24.11■■□□□ 1.45
TGFB1-201ENST00000221930 BAZ1BQ9UIG0 1483 aaKnown RBP24.09■■□□□ 1.45
TGFB1-201ENST00000221930 NCAPD3P42695 1498 aa24.02■■□□□ 1.44
TGFB1-201ENST00000221930 ABCC8Q09428 1581 aa23.93■■□□□ 1.42
TGFB1-201ENST00000221930 ZEB1P37275 1124 aaPredicted RBP23.88■■□□□ 1.41
TGFB1-201ENST00000221930 EEA1Q15075 1411 aa23.77■■□□□ 1.39
TGFB1-201ENST00000221930 SOGA1O94964 1423 aa23.72■■□□□ 1.39
TGFB1-201ENST00000221930 PRDM2Q13029 1718 aa23.71■■□□□ 1.39
TGFB1-201ENST00000221930 WRNQ14191 1432 aaPredicted RBP eCLIP23.68■■□□□ 1.38
TGFB1-201ENST00000221930 TTBK1Q5TCY1 1321 aaPredicted RBP23.66■■□□□ 1.38
TGFB1-201ENST00000221930 RUSC2Q8N2Y8 1516 aa23.61■■□□□ 1.37
TGFB1-201ENST00000221930 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.61■■□□□ 1.37
TGFB1-201ENST00000221930 BIVM-ERCC5R4GMW8 1640 aa23.6■■□□□ 1.37
TGFB1-201ENST00000221930 CEP162Q5TB80 1403 aa23.58■■□□□ 1.37
TGFB1-201ENST00000221930 CSRNP3Q8WYN3 585 aa23.58■■□□□ 1.37
TGFB1-201ENST00000221930 CFTRP13569 1480 aa23.57■■□□□ 1.36
TGFB1-201ENST00000221930 CC2D2AQ9P2K1 1620 aa23.57■■□□□ 1.36
TGFB1-201ENST00000221930 TOP2BQ02880 1626 aa23.57■■□□□ 1.36
TGFB1-201ENST00000221930 SYNJ1O43426 1573 aa23.56■■□□□ 1.36
TGFB1-201ENST00000221930 UBTFP17480 764 aaKnown RBP23.55■■□□□ 1.36
TGFB1-201ENST00000221930 CCER1Q8TC90 406 aaPredicted RBP23.51■■□□□ 1.35
TGFB1-201ENST00000221930 TNIKQ9UKE5 1360 aa23.5■■□□□ 1.35
TGFB1-201ENST00000221930 KIF21BO75037 1637 aa23.41■■□□□ 1.34
TGFB1-201ENST00000221930 GOLGA3Q08378 1498 aa23.36■■□□□ 1.33
TGFB1-201ENST00000221930 CADPSQ9ULU8 1353 aa23.33■■□□□ 1.33
TGFB1-201ENST00000221930 SCAF1Q9H7N4 1312 aaKnown RBP23.3■■□□□ 1.32
TGFB1-201ENST00000221930 CEP164Q9UPV0 1460 aa23.29■■□□□ 1.32
TGFB1-201ENST00000221930 CUX1P39880 1505 aa23.28■■□□□ 1.32
TGFB1-201ENST00000221930 LAMC3Q9Y6N6 1575 aa23.19■■□□□ 1.3
TGFB1-201ENST00000221930 ERICH3Q5RHP9 1530 aa23.19■■□□□ 1.3
TGFB1-201ENST00000221930 RANGAP1P46060 587 aaPredicted RBP23.19■■□□□ 1.3
TGFB1-201ENST00000221930 CLIP1P30622 1438 aa23.14■■□□□ 1.3
TGFB1-201ENST00000221930 RAPGEF2Q9Y4G8 1499 aa23.12■■□□□ 1.29
TGFB1-201ENST00000221930 KIF27Q86VH2 1401 aa23.08■■□□□ 1.29
TGFB1-201ENST00000221930 PRXQ9BXM0 1461 aa23.06■■□□□ 1.28
TGFB1-201ENST00000221930 DNMBPQ6XZF7 1577 aa23.06■■□□□ 1.28
TGFB1-201ENST00000221930 HNRNPUL2Q1KMD3 747 aaKnown RBP23.06■■□□□ 1.28
TGFB1-201ENST00000221930 FANCD2Q9BXW9 1451 aa23.06■■□□□ 1.28
TGFB1-201ENST00000221930 DIEXFQ68CQ4 756 aaKnown RBP23.02■■□□□ 1.28
TGFB1-201ENST00000221930 VPS8Q8N3P4 1428 aa23.01■■□□□ 1.27
TGFB1-201ENST00000221930 APLP2Q06481 763 aa22.99■■□□□ 1.27
TGFB1-201ENST00000221930 FGD5Q6ZNL6 1462 aa22.94■■□□□ 1.26
TGFB1-201ENST00000221930 TOPBP1Q92547 1522 aa22.89■■□□□ 1.25
TGFB1-201ENST00000221930 PDS5BQ9NTI5 1447 aa22.89■■□□□ 1.25
TGFB1-201ENST00000221930 ABCA10Q8WWZ4 1543 aa22.87■■□□□ 1.25
TGFB1-201ENST00000221930 WDR97A6NE52 1622 aa22.84■■□□□ 1.25
TGFB1-201ENST00000221930 NEUROD1Q13562 356 aa22.83■■□□□ 1.24
TGFB1-201ENST00000221930 CUX2O14529 1486 aa22.82■■□□□ 1.24
TGFB1-201ENST00000221930 ZNF316A6NFI3 1004 aaPredicted RBP22.82■■□□□ 1.24
TGFB1-201ENST00000221930 NESP48681 1621 aa22.82■■□□□ 1.24
TGFB1-201ENST00000221930 ACIN1Q9UKV3 1341 aaKnown RBP22.8■■□□□ 1.24
TGFB1-201ENST00000221930 CUL7Q14999 1698 aa22.79■■□□□ 1.24
TGFB1-201ENST00000221930 POLA1P09884 1462 aaPredicted RBP22.78■■□□□ 1.24
TGFB1-201ENST00000221930 IGF1RP08069 1367 aa22.75■■□□□ 1.23
TGFB1-201ENST00000221930 KIF21AQ7Z4S6 1674 aa22.74■■□□□ 1.23
TGFB1-201ENST00000221930 ARAP1Q96P48 1450 aa22.74■■□□□ 1.23
TGFB1-201ENST00000221930 URB2Q14146 1524 aaKnown RBP22.74■■□□□ 1.23
TGFB1-201ENST00000221930 KANK4Q5T7N3 995 aaPredicted RBP22.73■■□□□ 1.23
TGFB1-201ENST00000221930 ABCA5Q8WWZ7 1642 aa22.68■■□□□ 1.22
TGFB1-201ENST00000221930 CENPBP07199 599 aaPredicted RBP22.65■■□□□ 1.22
TGFB1-201ENST00000221930 CARMIL1Q5VZK9 1371 aa22.65■■□□□ 1.22
TGFB1-201ENST00000221930 GTF3C3Q9Y5Q9 886 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms