RNA–Protein interactions for RNA: ENST00000574897.5

NPLOC4-217, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2

Gene NPLOC4, Length 2,365 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-217ENST00000574897 NISCHQ9Y2I1 1504 aa51.34■■■■■ 5.81
NPLOC4-217ENST00000574897 CCDC180Q9P1Z9 1646 aa44.16■■■■■ 4.66
NPLOC4-217ENST00000574897 ZCCHC6Q5VYS8 1495 aaKnown RBP43.3■■■■■ 4.52
NPLOC4-217ENST00000574897 SHROOM4Q9ULL8 1493 aa43.07■■■■■ 4.49
NPLOC4-217ENST00000574897 DCAF8L2P0C7V8 631 aa42.58■■■■■ 4.41
NPLOC4-217ENST00000574897 DCAF1Q9Y4B6 1507 aa42.17■■■■■ 4.34
NPLOC4-217ENST00000574897 SUPT5HO00267 1087 aaKnown RBP41.83■■■■■ 4.29
NPLOC4-217ENST00000574897 ABCC9O60706 1549 aa41.39■■■■■ 4.22
NPLOC4-217ENST00000574897 MYO15BQ96JP2 1530 aa41.24■■■■■ 4.19
NPLOC4-217ENST00000574897 SCRIBQ14160 1630 aa41.16■■■■■ 4.18
NPLOC4-217ENST00000574897 NACADO15069 1562 aa40.91■■■■■ 4.14
NPLOC4-217ENST00000574897 RB1CC1Q8TDY2 1594 aa40.41■■■■■ 4.06
NPLOC4-217ENST00000574897 CHIC1Q5VXU3 224 aa40.34■■■■■ 4.05
NPLOC4-217ENST00000574897 RSF1Q96T23 1441 aaPredicted RBP40.28■■■■■ 4.04
NPLOC4-217ENST00000574897 CECR2Q9BXF3 1484 aa40.08■■■■■ 4.01
NPLOC4-217ENST00000574897 UNC13AQ9UPW8 1703 aa39.97■■■■□ 3.99
NPLOC4-217ENST00000574897 MROH2BQ7Z745 1585 aa39.88■■■■□ 3.97
NPLOC4-217ENST00000574897 WIZO95785 1651 aa39.68■■■■□ 3.94
NPLOC4-217ENST00000574897 BAZ1AQ9NRL2 1556 aaPredicted RBP39.5■■■■□ 3.91
NPLOC4-217ENST00000574897 BICRAQ9NZM4 1560 aa39.38■■■■□ 3.89
NPLOC4-217ENST00000574897 PABPN1Q86U42 306 aaKnown RBP eCLIP39.34■■■■□ 3.89
NPLOC4-217ENST00000574897 SMARCA4P51532 1647 aa39.32■■■■□ 3.89
NPLOC4-217ENST00000574897 LOC105371045A0A1W2PR82 267 aa39.09■■■■□ 3.85
NPLOC4-217ENST00000574897 TRIM41Q8WV44 630 aa39.02■■■■□ 3.84
NPLOC4-217ENST00000574897 TOP2AP11388 1531 aaKnown RBP39.02■■■■□ 3.84
NPLOC4-217ENST00000574897 EIF4G1Q04637 1599 aaKnown RBP38.85■■■■□ 3.81
NPLOC4-217ENST00000574897 SMARCA2P51531 1590 aa38.8■■■■□ 3.8
NPLOC4-217ENST00000574897 CCDC88BA6NC98 1476 aa38.79■■■■□ 3.8
NPLOC4-217ENST00000574897 FAM9AQ8IZU1 332 aaPredicted RBP38.67■■■■□ 3.78
NPLOC4-217ENST00000574897 PEG3Q9GZU2 1588 aa38.61■■■■□ 3.77
NPLOC4-217ENST00000574897 ABCC8Q09428 1581 aa38.47■■■■□ 3.75
NPLOC4-217ENST00000574897 ATAD2BQ9ULI0 1458 aa38.42■■■■□ 3.74
NPLOC4-217ENST00000574897 EHMT2Q96KQ7 1210 aa38.34■■■■□ 3.73
NPLOC4-217ENST00000574897 BAZ1BQ9UIG0 1483 aaKnown RBP38.27■■■■□ 3.72
NPLOC4-217ENST00000574897 PCGF6Q9BYE7 350 aa38.23■■■■□ 3.71
NPLOC4-217ENST00000574897 SOGA1O94964 1423 aa37.88■■■■□ 3.66
NPLOC4-217ENST00000574897 WRNQ14191 1432 aaPredicted RBP eCLIP37.86■■■■□ 3.65
NPLOC4-217ENST00000574897 NCAPD3P42695 1498 aa37.81■■■■□ 3.64
NPLOC4-217ENST00000574897 HMGXB3Q12766 1538 aa37.8■■■■□ 3.64
NPLOC4-217ENST00000574897 SYNJ1O43426 1573 aa37.8■■■■□ 3.64
NPLOC4-217ENST00000574897 RUSC2Q8N2Y8 1516 aa37.78■■■■□ 3.64
NPLOC4-217ENST00000574897 HRCP23327 699 aa37.7■■■■□ 3.63
NPLOC4-217ENST00000574897 TRIM26Q12899 539 aaPredicted RBP37.7■■■■□ 3.63
NPLOC4-217ENST00000574897 EEA1Q15075 1411 aa37.55■■■■□ 3.6
NPLOC4-217ENST00000574897 CSRNP3Q8WYN3 585 aa37.53■■■■□ 3.6
NPLOC4-217ENST00000574897 TOP2BQ02880 1626 aa37.4■■■■□ 3.58
NPLOC4-217ENST00000574897 PPARGC1BQ86YN6 1023 aaKnown RBP37.35■■■■□ 3.57
NPLOC4-217ENST00000574897 CC2D2AQ9P2K1 1620 aa37.35■■■■□ 3.57
NPLOC4-217ENST00000574897 CEP162Q5TB80 1403 aa37.33■■■■□ 3.57
NPLOC4-217ENST00000574897 BIVM-ERCC5R4GMW8 1640 aa37.32■■■■□ 3.57
NPLOC4-217ENST00000574897 TNIKQ9UKE5 1360 aa37.32■■■■□ 3.56
NPLOC4-217ENST00000574897 CFTRP13569 1480 aa37.29■■■■□ 3.56
NPLOC4-217ENST00000574897 UBTFP17480 764 aaKnown RBP37.28■■■■□ 3.56
NPLOC4-217ENST00000574897 GOLGA3Q08378 1498 aa37.27■■■■□ 3.56
NPLOC4-217ENST00000574897 CUX1P39880 1505 aa37.19■■■■□ 3.54
NPLOC4-217ENST00000574897 KIF21BO75037 1637 aa37.18■■■■□ 3.54
NPLOC4-217ENST00000574897 PRDM2Q13029 1718 aa37.17■■■■□ 3.54
NPLOC4-217ENST00000574897 CEP164Q9UPV0 1460 aa37.15■■■■□ 3.54
NPLOC4-217ENST00000574897 RAPGEF2Q9Y4G8 1499 aa37.02■■■■□ 3.52
NPLOC4-217ENST00000574897 CADPSQ9ULU8 1353 aa36.99■■■■□ 3.51
NPLOC4-217ENST00000574897 TTBK1Q5TCY1 1321 aaPredicted RBP36.9■■■■□ 3.5
NPLOC4-217ENST00000574897 CLIP1P30622 1438 aa36.8■■■■□ 3.48
NPLOC4-217ENST00000574897 PRXQ9BXM0 1461 aa36.75■■■■□ 3.47
NPLOC4-217ENST00000574897 RANGAP1P46060 587 aaPredicted RBP36.74■■■■□ 3.47
NPLOC4-217ENST00000574897 KIF27Q86VH2 1401 aa36.74■■■■□ 3.47
NPLOC4-217ENST00000574897 ERICH3Q5RHP9 1530 aa36.69■■■■□ 3.46
NPLOC4-217ENST00000574897 NESP48681 1621 aa36.68■■■■□ 3.46
NPLOC4-217ENST00000574897 FANCD2Q9BXW9 1451 aa36.66■■■■□ 3.46
NPLOC4-217ENST00000574897 FGD5Q6ZNL6 1462 aa36.62■■■■□ 3.45
NPLOC4-217ENST00000574897 CUX2O14529 1486 aa36.58■■■■□ 3.45
NPLOC4-217ENST00000574897 VPS8Q8N3P4 1428 aa36.55■■■■□ 3.44
NPLOC4-217ENST00000574897 DNAJC5BQ9UF47 199 aa36.53■■■■□ 3.44
NPLOC4-217ENST00000574897 ZEB1P37275 1124 aaPredicted RBP36.46■■■■□ 3.43
NPLOC4-217ENST00000574897 DNMBPQ6XZF7 1577 aa36.42■■■■□ 3.42
NPLOC4-217ENST00000574897 IGF1RP08069 1367 aa36.4■■■■□ 3.42
NPLOC4-217ENST00000574897 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.38■■■■□ 3.41
NPLOC4-217ENST00000574897 LAMC3Q9Y6N6 1575 aa36.37■■■■□ 3.41
NPLOC4-217ENST00000574897 TOPBP1Q92547 1522 aa36.37■■■■□ 3.41
NPLOC4-217ENST00000574897 ARAP1Q96P48 1450 aa36.36■■■■□ 3.41
NPLOC4-217ENST00000574897 RAD54L2Q9Y4B4 1467 aa36.34■■■■□ 3.41
NPLOC4-217ENST00000574897 POLA1P09884 1462 aaPredicted RBP36.3■■■■□ 3.4
NPLOC4-217ENST00000574897 CARMIL1Q5VZK9 1371 aa36.23■■■■□ 3.39
NPLOC4-217ENST00000574897 APLP2Q06481 763 aa36.23■■■■□ 3.39
NPLOC4-217ENST00000574897 URB2Q14146 1524 aaKnown RBP36.22■■■■□ 3.39
NPLOC4-217ENST00000574897 CCER1Q8TC90 406 aaPredicted RBP36.18■■■■□ 3.38
NPLOC4-217ENST00000574897 ABCA10Q8WWZ4 1543 aa36.18■■■■□ 3.38
NPLOC4-217ENST00000574897 ARHGAP35Q9NRY4 1499 aa36.17■■■■□ 3.38
NPLOC4-217ENST00000574897 KIF21AQ7Z4S6 1674 aa36.16■■■■□ 3.38
NPLOC4-217ENST00000574897 PDS5BQ9NTI5 1447 aa36.07■■■■□ 3.36
NPLOC4-217ENST00000574897 WDR97A6NE52 1622 aa36.06■■■■□ 3.36
NPLOC4-217ENST00000574897 HNRNPUL2Q1KMD3 747 aaKnown RBP35.99■■■■□ 3.35
NPLOC4-217ENST00000574897 KANK4Q5T7N3 995 aaPredicted RBP35.98■■■■□ 3.35
NPLOC4-217ENST00000574897 CUL7Q14999 1698 aa35.91■■■■□ 3.34
NPLOC4-217ENST00000574897 TDRD9Q8NDG6 1382 aaKnown RBP35.89■■■■□ 3.34
NPLOC4-217ENST00000574897 ABCA5Q8WWZ7 1642 aa35.87■■■■□ 3.33
NPLOC4-217ENST00000574897 CTTNBP2Q8WZ74 1663 aa35.79■■■■□ 3.32
NPLOC4-217ENST00000574897 P3H3Q8IVL6 736 aa35.78■■■■□ 3.32
NPLOC4-217ENST00000574897 GAPVD1Q14C86 1478 aa35.76■■■■□ 3.32
NPLOC4-217ENST00000574897 TARBP1Q13395 1621 aaKnown RBP35.75■■■■□ 3.31
NPLOC4-217ENST00000574897 TIAM1Q13009 1591 aa35.67■■■■□ 3.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms