RNA–Protein interactions for RNA: ENST00000463144.5

MSH5-211, Transcript of mutS homolog 5, humanhuman

TSL 5

Gene MSH5, Length 2,296 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-211ENST00000463144 NISCHQ9Y2I1 1504 aa22.4■■□□□ 1.18
MSH5-211ENST00000463144 CCDC180Q9P1Z9 1646 aa19.33■□□□□ 0.68
MSH5-211ENST00000463144 ZCCHC6Q5VYS8 1495 aaKnown RBP18.86■□□□□ 0.61
MSH5-211ENST00000463144 SHROOM4Q9ULL8 1493 aa18.58■□□□□ 0.57
MSH5-211ENST00000463144 DCAF8L2P0C7V8 631 aa18.48■□□□□ 0.55
MSH5-211ENST00000463144 DCAF1Q9Y4B6 1507 aa18.46■□□□□ 0.55
MSH5-211ENST00000463144 ABCC9O60706 1549 aa18.13■□□□□ 0.49
MSH5-211ENST00000463144 MYO15BQ96JP2 1530 aa18.11■□□□□ 0.49
MSH5-211ENST00000463144 SUPT5HO00267 1087 aaKnown RBP18.01■□□□□ 0.47
MSH5-211ENST00000463144 NACADO15069 1562 aa17.94■□□□□ 0.46
MSH5-211ENST00000463144 SCRIBQ14160 1630 aa17.91■□□□□ 0.46
MSH5-211ENST00000463144 RB1CC1Q8TDY2 1594 aa17.72■□□□□ 0.43
MSH5-211ENST00000463144 RSF1Q96T23 1441 aaPredicted RBP17.52■□□□□ 0.4
MSH5-211ENST00000463144 UNC13AQ9UPW8 1703 aa17.48■□□□□ 0.39
MSH5-211ENST00000463144 CECR2Q9BXF3 1484 aa17.45■□□□□ 0.38
MSH5-211ENST00000463144 CHIC1Q5VXU3 224 aa17.38■□□□□ 0.37
MSH5-211ENST00000463144 MROH2BQ7Z745 1585 aa17.37■□□□□ 0.37
MSH5-211ENST00000463144 BICRAQ9NZM4 1560 aa17.27■□□□□ 0.36
MSH5-211ENST00000463144 WIZO95785 1651 aa17.25■□□□□ 0.35
MSH5-211ENST00000463144 BAZ1AQ9NRL2 1556 aaPredicted RBP17.24■□□□□ 0.35
MSH5-211ENST00000463144 PABPN1Q86U42 306 aaKnown RBP eCLIP17.19■□□□□ 0.342e-6■■■□□ 15.7
MSH5-211ENST00000463144 SMARCA4P51532 1647 aa17.15■□□□□ 0.34
MSH5-211ENST00000463144 TOP2AP11388 1531 aaKnown RBP17■□□□□ 0.31
MSH5-211ENST00000463144 PEG3Q9GZU2 1588 aa16.9■□□□□ 0.3
MSH5-211ENST00000463144 SMARCA2P51531 1590 aa16.89■□□□□ 0.29
MSH5-211ENST00000463144 CCDC88BA6NC98 1476 aa16.89■□□□□ 0.29
MSH5-211ENST00000463144 EIF4G1Q04637 1599 aaKnown RBP16.88■□□□□ 0.29
MSH5-211ENST00000463144 TRIM41Q8WV44 630 aa16.86■□□□□ 0.29
MSH5-211ENST00000463144 ATAD2BQ9ULI0 1458 aa16.81■□□□□ 0.28
MSH5-211ENST00000463144 LOC105371045A0A1W2PR82 267 aa16.8■□□□□ 0.28
MSH5-211ENST00000463144 BAZ1BQ9UIG0 1483 aaKnown RBP16.7■□□□□ 0.26
MSH5-211ENST00000463144 ABCC8Q09428 1581 aa16.66■□□□□ 0.26
MSH5-211ENST00000463144 FAM9AQ8IZU1 332 aaPredicted RBP16.63■□□□□ 0.25
MSH5-211ENST00000463144 NCAPD3P42695 1498 aa16.59■□□□□ 0.25
MSH5-211ENST00000463144 HMGXB3Q12766 1538 aa16.56■□□□□ 0.24
MSH5-211ENST00000463144 WRNQ14191 1432 aaPredicted RBP eCLIP16.45■□□□□ 0.22
MSH5-211ENST00000463144 EHMT2Q96KQ7 1210 aa16.43■□□□□ 0.22
MSH5-211ENST00000463144 CC2D2AQ9P2K1 1620 aa16.42■□□□□ 0.22
MSH5-211ENST00000463144 SYNJ1O43426 1573 aa16.41■□□□□ 0.22
MSH5-211ENST00000463144 SOGA1O94964 1423 aa16.41■□□□□ 0.22
MSH5-211ENST00000463144 RUSC2Q8N2Y8 1516 aa16.36■□□□□ 0.21
MSH5-211ENST00000463144 CFTRP13569 1480 aa16.31■□□□□ 0.2
MSH5-211ENST00000463144 DNAJC5BQ9UF47 199 aa16.31■□□□□ 0.2
MSH5-211ENST00000463144 EEA1Q15075 1411 aa16.3■□□□□ 0.2
MSH5-211ENST00000463144 PCGF6Q9BYE7 350 aa16.3■□□□□ 0.2
MSH5-211ENST00000463144 TOP2BQ02880 1626 aa16.28■□□□□ 0.2
MSH5-211ENST00000463144 CSRNP3Q8WYN3 585 aa16.28■□□□□ 0.2
MSH5-211ENST00000463144 BIVM-ERCC5R4GMW8 1640 aa16.26■□□□□ 0.19
MSH5-211ENST00000463144 PRDM2Q13029 1718 aa16.22■□□□□ 0.19
MSH5-211ENST00000463144 CUX1P39880 1505 aa16.2■□□□□ 0.18
MSH5-211ENST00000463144 CADPSQ9ULU8 1353 aa16.19■□□□□ 0.18
MSH5-211ENST00000463144 TNIKQ9UKE5 1360 aa16.16■□□□□ 0.18
MSH5-211ENST00000463144 TRIM26Q12899 539 aaPredicted RBP16.16■□□□□ 0.18
MSH5-211ENST00000463144 GOLGA3Q08378 1498 aa16.14■□□□□ 0.17
MSH5-211ENST00000463144 KIF21BO75037 1637 aa16.12■□□□□ 0.17
MSH5-211ENST00000463144 CEP162Q5TB80 1403 aa16.12■□□□□ 0.17
MSH5-211ENST00000463144 CEP164Q9UPV0 1460 aa16.1■□□□□ 0.17
MSH5-211ENST00000463144 UBTFP17480 764 aaKnown RBP16.1■□□□□ 0.17
MSH5-211ENST00000463144 HRCP23327 699 aa16.04■□□□□ 0.16
MSH5-211ENST00000463144 RAPGEF2Q9Y4G8 1499 aa16.04■□□□□ 0.16
MSH5-211ENST00000463144 NESP48681 1621 aa16.03■□□□□ 0.16
MSH5-211ENST00000463144 FANCD2Q9BXW9 1451 aa16.03■□□□□ 0.16
MSH5-211ENST00000463144 PPARGC1BQ86YN6 1023 aaKnown RBP16■□□□□ 0.15
MSH5-211ENST00000463144 PRXQ9BXM0 1461 aa15.99■□□□□ 0.15
MSH5-211ENST00000463144 KIF27Q86VH2 1401 aa15.98■□□□□ 0.15
MSH5-211ENST00000463144 FGD5Q6ZNL6 1462 aa15.96■□□□□ 0.15
MSH5-211ENST00000463144 LAMC3Q9Y6N6 1575 aa15.95■□□□□ 0.14
MSH5-211ENST00000463144 ERICH3Q5RHP9 1530 aa15.95■□□□□ 0.14
MSH5-211ENST00000463144 DNMBPQ6XZF7 1577 aa15.92■□□□□ 0.14
MSH5-211ENST00000463144 CUX2O14529 1486 aa15.91■□□□□ 0.14
MSH5-211ENST00000463144 CLIP1P30622 1438 aa15.91■□□□□ 0.14
MSH5-211ENST00000463144 TOPBP1Q92547 1522 aa15.89■□□□□ 0.13
MSH5-211ENST00000463144 IGF1RP08069 1367 aa15.87■□□□□ 0.13
MSH5-211ENST00000463144 POLA1P09884 1462 aaPredicted RBP15.84■□□□□ 0.13
MSH5-211ENST00000463144 URB2Q14146 1524 aaKnown RBP15.84■□□□□ 0.13
MSH5-211ENST00000463144 RAD54L2Q9Y4B4 1467 aa15.84■□□□□ 0.13
MSH5-211ENST00000463144 RANGAP1P46060 587 aaPredicted RBP15.82■□□□□ 0.12
MSH5-211ENST00000463144 PDS5BQ9NTI5 1447 aa15.82■□□□□ 0.12
MSH5-211ENST00000463144 KIF21AQ7Z4S6 1674 aa15.81■□□□□ 0.12
MSH5-211ENST00000463144 VPS8Q8N3P4 1428 aa15.81■□□□□ 0.12
MSH5-211ENST00000463144 ABCA10Q8WWZ4 1543 aa15.8■□□□□ 0.12
MSH5-211ENST00000463144 TTBK1Q5TCY1 1321 aaPredicted RBP15.79■□□□□ 0.12
MSH5-211ENST00000463144 CARMIL1Q5VZK9 1371 aa15.77■□□□□ 0.12
MSH5-211ENST00000463144 ARAP1Q96P48 1450 aa15.75■□□□□ 0.11
MSH5-211ENST00000463144 WDR97A6NE52 1622 aa15.74■□□□□ 0.11
MSH5-211ENST00000463144 ARHGAP35Q9NRY4 1499 aa15.69■□□□□ 0.1
MSH5-211ENST00000463144 ABCA5Q8WWZ7 1642 aa15.66■□□□□ 0.1
MSH5-211ENST00000463144 CUL7Q14999 1698 aa15.65■□□□□ 0.1
MSH5-211ENST00000463144 TDRD9Q8NDG6 1382 aaKnown RBP15.65■□□□□ 0.1
MSH5-211ENST00000463144 TARBP1Q13395 1621 aaKnown RBP15.64■□□□□ 0.09
MSH5-211ENST00000463144 APLP2Q06481 763 aa15.63■□□□□ 0.09
MSH5-211ENST00000463144 GAPVD1Q14C86 1478 aa15.61■□□□□ 0.09
MSH5-211ENST00000463144 MRC2Q9UBG0 1479 aa15.61■□□□□ 0.09
MSH5-211ENST00000463144 ZEB1P37275 1124 aaPredicted RBP15.6■□□□□ 0.09
MSH5-211ENST00000463144 ERCC6Q03468 1493 aa15.59■□□□□ 0.09
MSH5-211ENST00000463144 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.56■□□□□ 0.08
MSH5-211ENST00000463144 KANK4Q5T7N3 995 aaPredicted RBP15.55■□□□□ 0.08
MSH5-211ENST00000463144 CTTNBP2Q8WZ74 1663 aa15.55■□□□□ 0.08
MSH5-211ENST00000463144 WDR62O43379 1518 aa15.52■□□□□ 0.08
MSH5-211ENST00000463144 THOC2Q8NI27 1593 aaKnown RBP15.52■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms