RNA–Protein interactions for RNA: ENST00000568743.1

PKM-221, Transcript of pyruvate kinase M1/2, humanhuman

TSL 1 (best)

Gene PKM, Length 580 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKM-221ENST00000568743 NISCHQ9Y2I1 1504 aa24.15■■□□□ 1.46
PKM-221ENST00000568743 CCDC180Q9P1Z9 1646 aa21.32■■□□□ 1
PKM-221ENST00000568743 ABCC9O60706 1549 aa20.78■□□□□ 0.92
PKM-221ENST00000568743 DCAF8L2P0C7V8 631 aa20.2■□□□□ 0.82
PKM-221ENST00000568743 ZCCHC6Q5VYS8 1495 aaKnown RBP20.18■□□□□ 0.82
PKM-221ENST00000568743 NACADO15069 1562 aa20.02■□□□□ 0.8
PKM-221ENST00000568743 RB1CC1Q8TDY2 1594 aa20■□□□□ 0.79
PKM-221ENST00000568743 DCAF1Q9Y4B6 1507 aa19.94■□□□□ 0.78
PKM-221ENST00000568743 MYO15BQ96JP2 1530 aa19.93■□□□□ 0.78
PKM-221ENST00000568743 SCRIBQ14160 1630 aa19.58■□□□□ 0.72
PKM-221ENST00000568743 UNC13AQ9UPW8 1703 aa19.54■□□□□ 0.72
PKM-221ENST00000568743 PABPN1Q86U42 306 aaKnown RBP eCLIP19.49■□□□□ 0.71
PKM-221ENST00000568743 BICRAQ9NZM4 1560 aa19.41■□□□□ 0.7
PKM-221ENST00000568743 SHROOM4Q9ULL8 1493 aa19.35■□□□□ 0.69
PKM-221ENST00000568743 DNAJC5BQ9UF47 199 aa18.9■□□□□ 0.62
PKM-221ENST00000568743 EIF4G1Q04637 1599 aaKnown RBP18.89■□□□□ 0.61
PKM-221ENST00000568743 CECR2Q9BXF3 1484 aa18.85■□□□□ 0.61
PKM-221ENST00000568743 CC2D2AQ9P2K1 1620 aa18.76■□□□□ 0.59
PKM-221ENST00000568743 BAZ1AQ9NRL2 1556 aaPredicted RBP18.7■□□□□ 0.58
PKM-221ENST00000568743 SMARCA4P51532 1647 aa18.7■□□□□ 0.58
PKM-221ENST00000568743 MROH2BQ7Z745 1585 aa18.66■□□□□ 0.58
PKM-221ENST00000568743 ATAD2BQ9ULI0 1458 aa18.57■□□□□ 0.56
PKM-221ENST00000568743 RSF1Q96T23 1441 aaPredicted RBP18.51■□□□□ 0.55
PKM-221ENST00000568743 SMARCA2P51531 1590 aa18.51■□□□□ 0.55
PKM-221ENST00000568743 NCAPD3P42695 1498 aa18.49■□□□□ 0.55
PKM-221ENST00000568743 PEG3Q9GZU2 1588 aa18.47■□□□□ 0.55
PKM-221ENST00000568743 WIZO95785 1651 aa18.46■□□□□ 0.55
PKM-221ENST00000568743 BAZ1BQ9UIG0 1483 aaKnown RBP18.42■□□□□ 0.54
PKM-221ENST00000568743 HMGXB3Q12766 1538 aa18.41■□□□□ 0.54
PKM-221ENST00000568743 SUPT5HO00267 1087 aaKnown RBP18.28■□□□□ 0.52
PKM-221ENST00000568743 TOP2AP11388 1531 aaKnown RBP18.25■□□□□ 0.51
PKM-221ENST00000568743 CCDC88BA6NC98 1476 aa18.07■□□□□ 0.48
PKM-221ENST00000568743 NESP48681 1621 aa18.05■□□□□ 0.48
PKM-221ENST00000568743 CADPSQ9ULU8 1353 aa17.99■□□□□ 0.47
PKM-221ENST00000568743 LAMC3Q9Y6N6 1575 aa17.95■□□□□ 0.46
PKM-221ENST00000568743 CFTRP13569 1480 aa17.91■□□□□ 0.46
PKM-221ENST00000568743 ERCC6Q03468 1493 aa17.88■□□□□ 0.45
PKM-221ENST00000568743 PDS5BQ9NTI5 1447 aa17.85■□□□□ 0.45
PKM-221ENST00000568743 FANCD2Q9BXW9 1451 aa17.8■□□□□ 0.44
PKM-221ENST00000568743 KIF21AQ7Z4S6 1674 aa17.78■□□□□ 0.44
PKM-221ENST00000568743 CEP164Q9UPV0 1460 aa17.74■□□□□ 0.43
PKM-221ENST00000568743 PRDM2Q13029 1718 aa17.72■□□□□ 0.43
PKM-221ENST00000568743 THOC2Q8NI27 1593 aaKnown RBP17.68■□□□□ 0.42
PKM-221ENST00000568743 MRC2Q9UBG0 1479 aa17.67■□□□□ 0.42
PKM-221ENST00000568743 URB2Q14146 1524 aaKnown RBP17.61■□□□□ 0.41
PKM-221ENST00000568743 WDR62O43379 1518 aa17.58■□□□□ 0.41
PKM-221ENST00000568743 CUX2O14529 1486 aa17.56■□□□□ 0.4
PKM-221ENST00000568743 TOPBP1Q92547 1522 aa17.53■□□□□ 0.4
PKM-221ENST00000568743 DNMBPQ6XZF7 1577 aa17.5■□□□□ 0.39
PKM-221ENST00000568743 ABCC8Q09428 1581 aa17.49■□□□□ 0.39
PKM-221ENST00000568743 CUX1P39880 1505 aa17.49■□□□□ 0.39
PKM-221ENST00000568743 WRNQ14191 1432 aaPredicted RBP eCLIP17.45■□□□□ 0.38
PKM-221ENST00000568743 SYNJ1O43426 1573 aa17.4■□□□□ 0.38
PKM-221ENST00000568743 POLA1P09884 1462 aaPredicted RBP17.4■□□□□ 0.38
PKM-221ENST00000568743 FGD5Q6ZNL6 1462 aa17.39■□□□□ 0.37
PKM-221ENST00000568743 RAD54L2Q9Y4B4 1467 aa17.36■□□□□ 0.37
PKM-221ENST00000568743 TOP2BQ02880 1626 aa17.36■□□□□ 0.37
PKM-221ENST00000568743 IFT140Q96RY7 1462 aa17.34■□□□□ 0.37
PKM-221ENST00000568743 BIVM-ERCC5R4GMW8 1640 aa17.34■□□□□ 0.37
PKM-221ENST00000568743 SOGA1O94964 1423 aa17.33■□□□□ 0.36
PKM-221ENST00000568743 TARBP1Q13395 1621 aaKnown RBP17.3■□□□□ 0.36
PKM-221ENST00000568743 ZNF608Q9ULD9 1512 aaPredicted RBP17.3■□□□□ 0.36
PKM-221ENST00000568743 TDRD9Q8NDG6 1382 aaKnown RBP17.24■□□□□ 0.35
PKM-221ENST00000568743 AQRO60306 1485 aaKnown RBP eCLIP17.24■□□□□ 0.359e-15■■■■□ 23.1
PKM-221ENST00000568743 TRIM41Q8WV44 630 aa17.21■□□□□ 0.35
PKM-221ENST00000568743 ABCA10Q8WWZ4 1543 aa17.21■□□□□ 0.34
PKM-221ENST00000568743 EIF4G3O43432 1585 aaKnown RBP17.2■□□□□ 0.34
PKM-221ENST00000568743 WDR97A6NE52 1622 aa17.18■□□□□ 0.34
PKM-221ENST00000568743 CHIC1Q5VXU3 224 aa17.15■□□□□ 0.34
PKM-221ENST00000568743 GAPVD1Q14C86 1478 aa17.13■□□□□ 0.33
PKM-221ENST00000568743 ABCA5Q8WWZ7 1642 aa17.11■□□□□ 0.33
PKM-221ENST00000568743 GRIN2BQ13224 1484 aa17.09■□□□□ 0.33
PKM-221ENST00000568743 DNAJC5Q9H3Z4 198 aa17.07■□□□□ 0.32
PKM-221ENST00000568743 SNAPC4Q5SXM2 1469 aa17.06■□□□□ 0.32
PKM-221ENST00000568743 KIF27Q86VH2 1401 aa17.05■□□□□ 0.32
PKM-221ENST00000568743 PBRM1Q86U86 1689 aa17.04■□□□□ 0.32
PKM-221ENST00000568743 RUSC2Q8N2Y8 1516 aa17.02■□□□□ 0.32
PKM-221ENST00000568743 FBLN2P98095 1184 aa17.01■□□□□ 0.31
PKM-221ENST00000568743 MAGI1Q96QZ7 1491 aaPredicted RBP16.99■□□□□ 0.31
PKM-221ENST00000568743 ERICH3Q5RHP9 1530 aa16.99■□□□□ 0.31
PKM-221ENST00000568743 IGF1RP08069 1367 aa16.98■□□□□ 0.31
PKM-221ENST00000568743 ADAMTS12P58397 1594 aa16.95■□□□□ 0.3
PKM-221ENST00000568743 CHMP7Q8WUX9 453 aaPredicted RBP16.95■□□□□ 0.3
PKM-221ENST00000568743 SYNJ2O15056 1496 aa16.94■□□□□ 0.3
PKM-221ENST00000568743 FHAD1B1AJZ9 1412 aa16.93■□□□□ 0.3
PKM-221ENST00000568743 CHD1O14646 1710 aa16.93■□□□□ 0.3
PKM-221ENST00000568743 FAM9AQ8IZU1 332 aaPredicted RBP16.92■□□□□ 0.3
PKM-221ENST00000568743 OSCARQ8IYS5 282 aa16.9■□□□□ 0.3
PKM-221ENST00000568743 CARMIL1Q5VZK9 1371 aa16.89■□□□□ 0.29
PKM-221ENST00000568743 GRIN2AQ12879 1464 aa16.87■□□□□ 0.29
PKM-221ENST00000568743 CUL7Q14999 1698 aa16.86■□□□□ 0.29
PKM-221ENST00000568743 EEA1Q15075 1411 aa16.84■□□□□ 0.29
PKM-221ENST00000568743 CSRNP3Q8WYN3 585 aa16.83■□□□□ 0.28
PKM-221ENST00000568743 RAPGEF2Q9Y4G8 1499 aa16.8■□□□□ 0.28
PKM-221ENST00000568743 NUP160Q12769 1436 aa16.79■□□□□ 0.28
PKM-221ENST00000568743 CEP170Q5SW79 1584 aa16.78■□□□□ 0.28
PKM-221ENST00000568743 PRXQ9BXM0 1461 aa16.78■□□□□ 0.28
PKM-221ENST00000568743 CLASP1Q7Z460 1538 aa16.75■□□□□ 0.27
PKM-221ENST00000568743 EHMT2Q96KQ7 1210 aa16.73■□□□□ 0.27
PKM-221ENST00000568743 KIAA0586Q9BVV6 1533 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms