RNA–Protein interactions for RNA: ENST00000423982.6

MSH5-206, Transcript of mutS homolog 5, humanhuman

TSL 5

Gene MSH5, Length 2,706 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-206ENST00000423982 NISCHQ9Y2I1 1504 aa30.48■■■□□ 2.47
MSH5-206ENST00000423982 CCDC180Q9P1Z9 1646 aa26.47■■□□□ 1.83
MSH5-206ENST00000423982 DCAF8L2P0C7V8 631 aa25.74■■□□□ 1.71
MSH5-206ENST00000423982 ABCC9O60706 1549 aa25.65■■□□□ 1.7
MSH5-206ENST00000423982 ZCCHC6Q5VYS8 1495 aaKnown RBP25.53■■□□□ 1.68
MSH5-206ENST00000423982 SHROOM4Q9ULL8 1493 aa25.19■■□□□ 1.62
MSH5-206ENST00000423982 DCAF1Q9Y4B6 1507 aa24.98■■□□□ 1.59
MSH5-206ENST00000423982 NACADO15069 1562 aa24.78■■□□□ 1.56
MSH5-206ENST00000423982 MYO15BQ96JP2 1530 aa24.7■■□□□ 1.55
MSH5-206ENST00000423982 RB1CC1Q8TDY2 1594 aa24.67■■□□□ 1.54
MSH5-206ENST00000423982 SCRIBQ14160 1630 aa24.67■■□□□ 1.54
MSH5-206ENST00000423982 SUPT5HO00267 1087 aaKnown RBP24.53■■□□□ 1.52
MSH5-206ENST00000423982 PABPN1Q86U42 306 aaKnown RBP eCLIP24.27■■□□□ 1.482e-6■■■□□ 15.7
MSH5-206ENST00000423982 UNC13AQ9UPW8 1703 aa24.2■■□□□ 1.46
MSH5-206ENST00000423982 BICRAQ9NZM4 1560 aa23.98■■□□□ 1.43
MSH5-206ENST00000423982 HRCP23327 699 aa23.95■■□□□ 1.42
MSH5-206ENST00000423982 CHIC1Q5VXU3 224 aa23.91■■□□□ 1.42
MSH5-206ENST00000423982 CECR2Q9BXF3 1484 aa23.87■■□□□ 1.41
MSH5-206ENST00000423982 PCGF6Q9BYE7 350 aa23.78■■□□□ 1.4
MSH5-206ENST00000423982 PPARGC1BQ86YN6 1023 aaKnown RBP23.66■■□□□ 1.38
MSH5-206ENST00000423982 RSF1Q96T23 1441 aaPredicted RBP23.65■■□□□ 1.38
MSH5-206ENST00000423982 MROH2BQ7Z745 1585 aa23.65■■□□□ 1.38
MSH5-206ENST00000423982 BAZ1AQ9NRL2 1556 aaPredicted RBP23.52■■□□□ 1.36
MSH5-206ENST00000423982 SMARCA4P51532 1647 aa23.47■■□□□ 1.35
MSH5-206ENST00000423982 WIZO95785 1651 aa23.45■■□□□ 1.34
MSH5-206ENST00000423982 LOC105371045A0A1W2PR82 267 aa23.41■■□□□ 1.34
MSH5-206ENST00000423982 EIF4G1Q04637 1599 aaKnown RBP23.31■■□□□ 1.32
MSH5-206ENST00000423982 ATAD2BQ9ULI0 1458 aa23.17■■□□□ 1.3
MSH5-206ENST00000423982 BAZ1BQ9UIG0 1483 aaKnown RBP23.07■■□□□ 1.28
MSH5-206ENST00000423982 TOP2AP11388 1531 aaKnown RBP23.06■■□□□ 1.28
MSH5-206ENST00000423982 SMARCA2P51531 1590 aa23.06■■□□□ 1.28
MSH5-206ENST00000423982 CC2D2AQ9P2K1 1620 aa23.05■■□□□ 1.28
MSH5-206ENST00000423982 PEG3Q9GZU2 1588 aa23.04■■□□□ 1.28
MSH5-206ENST00000423982 TRIM26Q12899 539 aaPredicted RBP23.01■■□□□ 1.27
MSH5-206ENST00000423982 CCDC88BA6NC98 1476 aa22.94■■□□□ 1.26
MSH5-206ENST00000423982 NCAPD3P42695 1498 aa22.92■■□□□ 1.26
MSH5-206ENST00000423982 DNAJC5BQ9UF47 199 aa22.87■■□□□ 1.25
MSH5-206ENST00000423982 HMGXB3Q12766 1538 aa22.82■■□□□ 1.24
MSH5-206ENST00000423982 FAM9AQ8IZU1 332 aaPredicted RBP22.73■■□□□ 1.23
MSH5-206ENST00000423982 EHMT2Q96KQ7 1210 aa22.7■■□□□ 1.22
MSH5-206ENST00000423982 TRIM41Q8WV44 630 aa22.65■■□□□ 1.22
MSH5-206ENST00000423982 ZEB1P37275 1124 aaPredicted RBP22.55■■□□□ 1.2
MSH5-206ENST00000423982 ABCC8Q09428 1581 aa22.51■■□□□ 1.19
MSH5-206ENST00000423982 SCAF1Q9H7N4 1312 aaKnown RBP22.48■■□□□ 1.19
MSH5-206ENST00000423982 NESP48681 1621 aa22.45■■□□□ 1.18
MSH5-206ENST00000423982 CADPSQ9ULU8 1353 aa22.41■■□□□ 1.18
MSH5-206ENST00000423982 CFTRP13569 1480 aa22.4■■□□□ 1.18
MSH5-206ENST00000423982 WRNQ14191 1432 aaPredicted RBP eCLIP22.28■■□□□ 1.16
MSH5-206ENST00000423982 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.22■■□□□ 1.15
MSH5-206ENST00000423982 FANCD2Q9BXW9 1451 aa22.21■■□□□ 1.15
MSH5-206ENST00000423982 PELP1Q8IZL8 1130 aaKnown RBP22.21■■□□□ 1.15
MSH5-206ENST00000423982 SYNJ1O43426 1573 aa22.2■■□□□ 1.14
MSH5-206ENST00000423982 LAMC3Q9Y6N6 1575 aa22.15■■□□□ 1.14
MSH5-206ENST00000423982 PRDM2Q13029 1718 aa22.12■■□□□ 1.13
MSH5-206ENST00000423982 CUX1P39880 1505 aa22.1■■□□□ 1.13
MSH5-206ENST00000423982 CCER1Q8TC90 406 aaPredicted RBP22.08■■□□□ 1.13
MSH5-206ENST00000423982 PDS5BQ9NTI5 1447 aa22.08■■□□□ 1.13
MSH5-206ENST00000423982 CEP164Q9UPV0 1460 aa22.06■■□□□ 1.12
MSH5-206ENST00000423982 SOGA1O94964 1423 aa22.05■■□□□ 1.12
MSH5-206ENST00000423982 TTBK1Q5TCY1 1321 aaPredicted RBP22.05■■□□□ 1.12
MSH5-206ENST00000423982 NEUROD1Q13562 356 aa22.04■■□□□ 1.12
MSH5-206ENST00000423982 KIF21AQ7Z4S6 1674 aa22.03■■□□□ 1.12
MSH5-206ENST00000423982 TOP2BQ02880 1626 aa22.01■■□□□ 1.11
MSH5-206ENST00000423982 RUSC2Q8N2Y8 1516 aa22■■□□□ 1.11
MSH5-206ENST00000423982 ACIN1Q9UKV3 1341 aaKnown RBP21.99■■□□□ 1.11
MSH5-206ENST00000423982 ERCC6Q03468 1493 aa21.97■■□□□ 1.11
MSH5-206ENST00000423982 URB2Q14146 1524 aaKnown RBP21.94■■□□□ 1.1
MSH5-206ENST00000423982 BIVM-ERCC5R4GMW8 1640 aa21.94■■□□□ 1.1
MSH5-206ENST00000423982 FGD5Q6ZNL6 1462 aa21.91■■□□□ 1.1
MSH5-206ENST00000423982 TOPBP1Q92547 1522 aa21.91■■□□□ 1.1
MSH5-206ENST00000423982 DIEXFQ68CQ4 756 aaKnown RBP21.88■■□□□ 1.09
MSH5-206ENST00000423982 DNMBPQ6XZF7 1577 aa21.86■■□□□ 1.09
MSH5-206ENST00000423982 RAD54L2Q9Y4B4 1467 aa21.85■■□□□ 1.09
MSH5-206ENST00000423982 GTF3C3Q9Y5Q9 886 aa21.85■■□□□ 1.09
MSH5-206ENST00000423982 POLA1P09884 1462 aaPredicted RBP21.82■■□□□ 1.08
MSH5-206ENST00000423982 CSRNP3Q8WYN3 585 aa21.81■■□□□ 1.08
MSH5-206ENST00000423982 MRC2Q9UBG0 1479 aa21.8■■□□□ 1.08
MSH5-206ENST00000423982 CUX2O14529 1486 aa21.78■■□□□ 1.08
MSH5-206ENST00000423982 KIF27Q86VH2 1401 aa21.71■■□□□ 1.07
MSH5-206ENST00000423982 TDRD9Q8NDG6 1382 aaKnown RBP21.7■■□□□ 1.06
MSH5-206ENST00000423982 CENPBP07199 599 aaPredicted RBP21.69■■□□□ 1.06
MSH5-206ENST00000423982 CEP162Q5TB80 1403 aa21.68■■□□□ 1.06
MSH5-206ENST00000423982 EEA1Q15075 1411 aa21.68■■□□□ 1.06
MSH5-206ENST00000423982 UBTFP17480 764 aaKnown RBP21.67■■□□□ 1.06
MSH5-206ENST00000423982 THOC2Q8NI27 1593 aaKnown RBP21.65■■□□□ 1.06
MSH5-206ENST00000423982 RANGAP1P46060 587 aaPredicted RBP21.64■■□□□ 1.05
MSH5-206ENST00000423982 WDR62O43379 1518 aa21.64■■□□□ 1.05
MSH5-206ENST00000423982 YTHDC1Q96MU7 727 aaKnown RBP21.6■■□□□ 1.05
MSH5-206ENST00000423982 ABCA10Q8WWZ4 1543 aa21.6■■□□□ 1.05
MSH5-206ENST00000423982 RAPGEF2Q9Y4G8 1499 aa21.57■■□□□ 1.04
MSH5-206ENST00000423982 AQRO60306 1485 aaKnown RBP eCLIP21.57■■□□□ 1.048e-9■■■■■ 33.9
MSH5-206ENST00000423982 IGF1RP08069 1367 aa21.56■■□□□ 1.04
MSH5-206ENST00000423982 ZNF608Q9ULD9 1512 aaPredicted RBP21.55■■□□□ 1.04
MSH5-206ENST00000423982 ZNF316A6NFI3 1004 aaPredicted RBP21.54■■□□□ 1.04
MSH5-206ENST00000423982 TARBP1Q13395 1621 aaKnown RBP21.53■■□□□ 1.04
MSH5-206ENST00000423982 GOLGA3Q08378 1498 aa21.51■■□□□ 1.03
MSH5-206ENST00000423982 TNIKQ9UKE5 1360 aa21.51■■□□□ 1.03
MSH5-206ENST00000423982 GAPVD1Q14C86 1478 aa21.5■■□□□ 1.03
MSH5-206ENST00000423982 WDR97A6NE52 1622 aa21.48■■□□□ 1.03
MSH5-206ENST00000423982 IFT140Q96RY7 1462 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms