RNA–Protein interactions for RNA: ENST00000417876.1

RFC4-204, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 479 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-204ENST00000417876 AEBP2Q6ZN18 517 aaPredicted RBP22.47■■□□□ 1.19
RFC4-204ENST00000417876 CHIC1Q5VXU3 224 aa22.32■■□□□ 1.16
RFC4-204ENST00000417876 PHF23Q9BUL5 403 aaPredicted RBP19.79■□□□□ 0.76
RFC4-204ENST00000417876 SENP3Q9H4L4 574 aaPredicted RBP18.86■□□□□ 0.61
RFC4-204ENST00000417876 PLPPR3Q6T4P5 718 aa18.28■□□□□ 0.52
RFC4-204ENST00000417876 FOXD1Q16676 465 aa17.74■□□□□ 0.43
RFC4-204ENST00000417876 PPP6R1Q9UPN7 881 aa17.32■□□□□ 0.36
RFC4-204ENST00000417876 ADRA2BP18089 450 aa17.29■□□□□ 0.36
RFC4-204ENST00000417876 POTEDQ86YR6 584 aa16.86■□□□□ 0.29
RFC4-204ENST00000417876 PIAS4Q8N2W9 510 aaPredicted RBP16.58■□□□□ 0.24
RFC4-204ENST00000417876 MSH5O43196 834 aa16.57■□□□□ 0.24
RFC4-204ENST00000417876 KCNA4P22459 653 aa16.46■□□□□ 0.23
RFC4-204ENST00000417876 PPP4R3CPQ6ZMV5 832 aa16.24■□□□□ 0.19
RFC4-204ENST00000417876 EHMT2Q96KQ7 1210 aa15.85■□□□□ 0.13
RFC4-204ENST00000417876 NCBP3Q53F19 620 aaKnown RBP15.83■□□□□ 0.12
RFC4-204ENST00000417876 NPM3O75607 178 aaKnown RBP15.74■□□□□ 0.11
RFC4-204ENST00000417876 SLC4A1APQ9BWU0 796 aaKnown RBP15.69■□□□□ 0.1
RFC4-204ENST00000417876 SCAF1Q9H7N4 1312 aaKnown RBP15.63■□□□□ 0.09
RFC4-204ENST00000417876 CNKSR2Q8WXI2 1034 aa15.62■□□□□ 0.09
RFC4-204ENST00000417876 MAPK8IP2Q13387 824 aaPredicted RBP15.58■□□□□ 0.08
RFC4-204ENST00000417876 CSRNP3Q8WYN3 585 aa15.5■□□□□ 0.07
RFC4-204ENST00000417876 ZBTB22O15209 634 aa15.22■□□□□ 0.03
RFC4-204ENST00000417876 RNF216Q9NWF9 866 aaPredicted RBP15.2■□□□□ 0.02
RFC4-204ENST00000417876 DNAJC5BQ9UF47 199 aa15.15■□□□□ 0.02
RFC4-204ENST00000417876 DMRT2Q9Y5R5 561 aa15.15■□□□□ 0.02
RFC4-204ENST00000417876 HOXD11P31277 338 aaPredicted RBP15.04■□□□□ -0
RFC4-204ENST00000417876 FOXD4L1Q9NU39 408 aa14.92□□□□□ -0.02
RFC4-204ENST00000417876 SLC4A2P04920 1241 aa14.79□□□□□ -0.04
RFC4-204ENST00000417876 CACNB1Q02641 598 aaPredicted RBP14.49□□□□□ -0.09
RFC4-204ENST00000417876 MYCNP04198 464 aaPredicted RBP14.45□□□□□ -0.1
RFC4-204ENST00000417876 DCAF8L1A6NGE4 600 aa14.43□□□□□ -0.1
RFC4-204ENST00000417876 ATXN8OSP0DMR3 200 aa14.32□□□□□ -0.12
RFC4-204ENST00000417876 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.28□□□□□ -0.12
RFC4-204ENST00000417876 RNF39Q9H2S5 420 aa14.19□□□□□ -0.14
RFC4-204ENST00000417876 ATF5Q9Y2D1 282 aaPredicted RBP14.19□□□□□ -0.14
RFC4-204ENST00000417876 U3KPZ7 1027 aaPredicted RBP14.18□□□□□ -0.14
RFC4-204ENST00000417876 SAMD1Q6SPF0 538 aaPredicted RBP14.02□□□□□ -0.17
RFC4-204ENST00000417876 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14□□□□□ -0.17
RFC4-204ENST00000417876 HNRNPUL2Q1KMD3 747 aaKnown RBP14□□□□□ -0.17
RFC4-204ENST00000417876 FKBP8Q14318 412 aa13.91□□□□□ -0.18
RFC4-204ENST00000417876 C1QBPQ07021 282 aaKnown RBP13.88□□□□□ -0.19
RFC4-204ENST00000417876 ZNF219Q9P2Y4 722 aaPredicted RBP13.79□□□□□ -0.2
RFC4-204ENST00000417876 APLP2Q06481 763 aa13.69□□□□□ -0.22
RFC4-204ENST00000417876 SPINK5Q9NQ38 1064 aaPredicted RBP13.67□□□□□ -0.22
RFC4-204ENST00000417876 TRHP20396 242 aaPredicted RBP13.58□□□□□ -0.24
RFC4-204ENST00000417876 RTN4Q9NQC3 1192 aaKnown RBP13.58□□□□□ -0.24
RFC4-204ENST00000417876 MKRN4PQ13434 485 aaPredicted RBP13.57□□□□□ -0.24
RFC4-204ENST00000417876 CAPN15O75808 1086 aa13.5□□□□□ -0.25
RFC4-204ENST00000417876 POLA2Q14181 598 aa13.5□□□□□ -0.25
RFC4-204ENST00000417876 AMER1Q5JTC6 1135 aaPredicted RBP13.47□□□□□ -0.25
RFC4-204ENST00000417876 SPDYE4A6NLX3 237 aa13.4□□□□□ -0.26
RFC4-204ENST00000417876 FBLN2P98095 1184 aa13.35□□□□□ -0.27
RFC4-204ENST00000417876 ABCB7O75027 752 aa13.34□□□□□ -0.27
RFC4-204ENST00000417876 PROM2Q8N271 834 aa13.3□□□□□ -0.28
RFC4-204ENST00000417876 DSG3P32926 999 aa13.22□□□□□ -0.29
RFC4-204ENST00000417876 FBXO3Q9UK99 471 aa13.17□□□□□ -0.3
RFC4-204ENST00000417876 ZBTB12Q9Y330 459 aaPredicted RBP13.16□□□□□ -0.3
RFC4-204ENST00000417876 POTEHQ6S545 545 aa13.11□□□□□ -0.31
RFC4-204ENST00000417876 VASPP50552 380 aaPredicted RBP13.06□□□□□ -0.32
RFC4-204ENST00000417876 OSCARQ8IYS5 282 aa13.01□□□□□ -0.33
RFC4-204ENST00000417876 IFNLR1Q8IU57 520 aaPredicted RBP13□□□□□ -0.33
RFC4-204ENST00000417876 SLC24A1O60721 1099 aa12.98□□□□□ -0.33
RFC4-204ENST00000417876 ZNF692Q9BU19 519 aaPredicted RBP12.97□□□□□ -0.33
RFC4-204ENST00000417876 SSUH2Q9Y2M2 353 aa12.93□□□□□ -0.34
RFC4-204ENST00000417876 SPDYE2BA6NHP3 402 aa12.91□□□□□ -0.34
RFC4-204ENST00000417876 SPDYE6P0CI01 402 aa12.91□□□□□ -0.34
RFC4-204ENST00000417876 SPDYE2Q495Y8 402 aa12.91□□□□□ -0.34
RFC4-204ENST00000417876 PABPN1Q86U42 306 aaKnown RBP eCLIP12.84□□□□□ -0.35
RFC4-204ENST00000417876 PKD2Q13563 968 aa12.76□□□□□ -0.37
RFC4-204ENST00000417876 STAG3Q9UJ98 1225 aa12.75□□□□□ -0.37
RFC4-204ENST00000417876 KLHL34Q8N239 644 aa12.68□□□□□ -0.38
RFC4-204ENST00000417876 SPOCK2Q92563 424 aa12.66□□□□□ -0.38
RFC4-204ENST00000417876 MIER1Q8N108 512 aa12.65□□□□□ -0.38
RFC4-204ENST00000417876 PLCD3Q8N3E9 789 aa12.65□□□□□ -0.38
RFC4-204ENST00000417876 DCAF8L2P0C7V8 631 aa12.54□□□□□ -0.4
RFC4-204ENST00000417876 ECM2O94769 699 aaPredicted RBP12.5□□□□□ -0.41
RFC4-204ENST00000417876 PLCB2Q00722 1185 aa12.5□□□□□ -0.41
RFC4-204ENST00000417876 RBM42Q9BTD8 480 aaKnown RBP12.47□□□□□ -0.41
RFC4-204ENST00000417876 AKT1S1Q96B36 256 aa12.46□□□□□ -0.41
RFC4-204ENST00000417876 RGL2O15211 777 aa12.44□□□□□ -0.42
RFC4-204ENST00000417876 CHRDL2Q6WN34 429 aa12.43□□□□□ -0.42
RFC4-204ENST00000417876 NPM1P06748 294 aaKnown RBP eCLIP12.42□□□□□ -0.42
RFC4-204ENST00000417876 PLEKHG5O94827 1062 aa12.41□□□□□ -0.42
RFC4-204ENST00000417876 SPDYE1Q8NFV5 336 aaPredicted RBP12.4□□□□□ -0.42
RFC4-204ENST00000417876 ZBTB47Q9UFB7 747 aaPredicted RBP12.4□□□□□ -0.42
RFC4-204ENST00000417876 REM2Q8IYK8 340 aaPredicted RBP12.39□□□□□ -0.43
RFC4-204ENST00000417876 CIZ1Q9ULV3 898 aaPredicted RBP12.39□□□□□ -0.43
RFC4-204ENST00000417876 CLEC11AQ9Y240 323 aa12.37□□□□□ -0.43
RFC4-204ENST00000417876 CREBZFQ9NS37 354 aa12.34□□□□□ -0.43
RFC4-204ENST00000417876 NUBP1P53384 320 aa12.33□□□□□ -0.44
RFC4-204ENST00000417876 PRR29P0C7W0 189 aa12.31□□□□□ -0.44
RFC4-204ENST00000417876 MNX1P50219 401 aaPredicted RBP12.31□□□□□ -0.44
RFC4-204ENST00000417876 HAP1P54257 671 aaPredicted RBP12.3□□□□□ -0.44
RFC4-204ENST00000417876 BBXQ8WY36 941 aaPredicted RBP12.3□□□□□ -0.44
RFC4-204ENST00000417876 PITPNM1O00562 1244 aa12.25□□□□□ -0.45
RFC4-204ENST00000417876 RNF25Q96BH1 459 aaPredicted RBP12.23□□□□□ -0.45
RFC4-204ENST00000417876 GSE1Q14687 1217 aa12.22□□□□□ -0.45
RFC4-204ENST00000417876 DCAF8Q5TAQ9 597 aa12.21□□□□□ -0.45
RFC4-204ENST00000417876 PAXIP1Q6ZW49 1069 aaPredicted RBP12.2□□□□□ -0.46
RFC4-204ENST00000417876 TRIM41Q8WV44 630 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms