RNA–Protein interactions for RNA: ENST00000374747.9

NPLOC4-202, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2 BASIC

Gene NPLOC4, Length 5,538 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-202ENST00000374747 NISCHQ9Y2I1 1504 aa22.32■■□□□ 1.16
NPLOC4-202ENST00000374747 DCAF8L2P0C7V8 631 aa21.38■■□□□ 1.01
NPLOC4-202ENST00000374747 SUPT5HO00267 1087 aaKnown RBP20.23■□□□□ 0.83
NPLOC4-202ENST00000374747 SHROOM4Q9ULL8 1493 aa20.2■□□□□ 0.82
NPLOC4-202ENST00000374747 PELP1Q8IZL8 1130 aaKnown RBP19.64■□□□□ 0.73
NPLOC4-202ENST00000374747 EHMT2Q96KQ7 1210 aa19.15■□□□□ 0.66
NPLOC4-202ENST00000374747 APLP2Q06481 763 aa18.97■□□□□ 0.63
NPLOC4-202ENST00000374747 FAM9AQ8IZU1 332 aaPredicted RBP18.94■□□□□ 0.62
NPLOC4-202ENST00000374747 TRIM41Q8WV44 630 aa18.9■□□□□ 0.62
NPLOC4-202ENST00000374747 CENPBP07199 599 aaPredicted RBP18.85■□□□□ 0.61
NPLOC4-202ENST00000374747 PCGF6Q9BYE7 350 aa18.85■□□□□ 0.61
NPLOC4-202ENST00000374747 ABCC9O60706 1549 aa18.84■□□□□ 0.61
NPLOC4-202ENST00000374747 ZCCHC6Q5VYS8 1495 aaKnown RBP18.83■□□□□ 0.6
NPLOC4-202ENST00000374747 ERICH6Q7L0X2 663 aa18.81■□□□□ 0.6
NPLOC4-202ENST00000374747 CHIC1Q5VXU3 224 aa18.77■□□□□ 0.6
NPLOC4-202ENST00000374747 CCER1Q8TC90 406 aaPredicted RBP18.73■□□□□ 0.59
NPLOC4-202ENST00000374747 ZEB1P37275 1124 aaPredicted RBP18.71■□□□□ 0.59
NPLOC4-202ENST00000374747 MYT1Q01538 1121 aa18.67■□□□□ 0.58
NPLOC4-202ENST00000374747 MYO15BQ96JP2 1530 aa18.65■□□□□ 0.58
NPLOC4-202ENST00000374747 TTBK1Q5TCY1 1321 aaPredicted RBP18.6■□□□□ 0.57
NPLOC4-202ENST00000374747 CCDC180Q9P1Z9 1646 aa18.55■□□□□ 0.56
NPLOC4-202ENST00000374747 UBTFP17480 764 aaKnown RBP18.5■□□□□ 0.55
NPLOC4-202ENST00000374747 RANGAP1P46060 587 aaPredicted RBP18.45■□□□□ 0.54
NPLOC4-202ENST00000374747 LOC105371045A0A1W2PR82 267 aa18.45■□□□□ 0.54
NPLOC4-202ENST00000374747 PABPN1Q86U42 306 aaKnown RBP eCLIP18.42■□□□□ 0.54
NPLOC4-202ENST00000374747 NEFLP07196 543 aa18.38■□□□□ 0.53
NPLOC4-202ENST00000374747 HRCP23327 699 aa18.35■□□□□ 0.53
NPLOC4-202ENST00000374747 PPARGC1BQ86YN6 1023 aaKnown RBP18.29■□□□□ 0.52
NPLOC4-202ENST00000374747 ATP1B4Q9UN42 357 aaPredicted RBP18.28■□□□□ 0.52
NPLOC4-202ENST00000374747 YTHDC1Q96MU7 727 aaKnown RBP18.27■□□□□ 0.52
NPLOC4-202ENST00000374747 SCRIBQ14160 1630 aa18.11■□□□□ 0.49
NPLOC4-202ENST00000374747 DCAF1Q9Y4B6 1507 aa18.01■□□□□ 0.47
NPLOC4-202ENST00000374747 TRIM26Q12899 539 aaPredicted RBP17.99■□□□□ 0.47
NPLOC4-202ENST00000374747 RB1CC1Q8TDY2 1594 aa17.94■□□□□ 0.46
NPLOC4-202ENST00000374747 DAXXQ9UER7 740 aaPredicted RBP17.89■□□□□ 0.45
NPLOC4-202ENST00000374747 RSF1Q96T23 1441 aaPredicted RBP17.87■□□□□ 0.45
NPLOC4-202ENST00000374747 NACADO15069 1562 aa17.87■□□□□ 0.45
NPLOC4-202ENST00000374747 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.79■□□□□ 0.44
NPLOC4-202ENST00000374747 HNRNPUL2Q1KMD3 747 aaKnown RBP17.79■□□□□ 0.44
NPLOC4-202ENST00000374747 CECR2Q9BXF3 1484 aa17.68■□□□□ 0.42
NPLOC4-202ENST00000374747 ITGAEP38570 1179 aa17.67■□□□□ 0.42
NPLOC4-202ENST00000374747 CSRNP3Q8WYN3 585 aa17.62■□□□□ 0.41
NPLOC4-202ENST00000374747 RTL5Q5HYW3 569 aaPredicted RBP17.6■□□□□ 0.41
NPLOC4-202ENST00000374747 POLR3GLQ9BT43 218 aa17.59■□□□□ 0.41
NPLOC4-202ENST00000374747 MYT1LQ9UL68 1186 aa17.52■□□□□ 0.39
NPLOC4-202ENST00000374747 DIEXFQ68CQ4 756 aaKnown RBP17.51■□□□□ 0.39
NPLOC4-202ENST00000374747 MROH2BQ7Z745 1585 aa17.5■□□□□ 0.39
NPLOC4-202ENST00000374747 ZNF316A6NFI3 1004 aaPredicted RBP17.47■□□□□ 0.39
NPLOC4-202ENST00000374747 FBLN2P98095 1184 aa17.44■□□□□ 0.38
NPLOC4-202ENST00000374747 FAM50AQ14320 339 aaKnown RBP17.42■□□□□ 0.38
NPLOC4-202ENST00000374747 CNGB1Q14028 1251 aaPredicted RBP17.41■□□□□ 0.38
NPLOC4-202ENST00000374747 BAZ1AQ9NRL2 1556 aaPredicted RBP17.39■□□□□ 0.37
NPLOC4-202ENST00000374747 CLSPNQ9HAW4 1339 aa17.37■□□□□ 0.37
NPLOC4-202ENST00000374747 BAZ1BQ9UIG0 1483 aaKnown RBP17.36■□□□□ 0.37
NPLOC4-202ENST00000374747 WIZO95785 1651 aa17.34■□□□□ 0.37
NPLOC4-202ENST00000374747 GTF3C3Q9Y5Q9 886 aa17.3■□□□□ 0.36
NPLOC4-202ENST00000374747 P3H3Q8IVL6 736 aa17.29■□□□□ 0.36
NPLOC4-202ENST00000374747 TRIM52Q96A61 297 aa17.22■□□□□ 0.35
NPLOC4-202ENST00000374747 BCANQ96GW7 911 aa17.22■□□□□ 0.35
NPLOC4-202ENST00000374747 EEA1Q15075 1411 aa17.2■□□□□ 0.34
NPLOC4-202ENST00000374747 CDK11AQ9UQ88 783 aaPredicted RBP17.19■□□□□ 0.34
NPLOC4-202ENST00000374747 WRNQ14191 1432 aaPredicted RBP eCLIP17.18■□□□□ 0.34
NPLOC4-202ENST00000374747 SLC4A1APQ9BWU0 796 aaKnown RBP17.18■□□□□ 0.34
NPLOC4-202ENST00000374747 CCDC88BA6NC98 1476 aa17.15■□□□□ 0.34
NPLOC4-202ENST00000374747 ABCC8Q09428 1581 aa17.15■□□□□ 0.34
NPLOC4-202ENST00000374747 SCAF1Q9H7N4 1312 aaKnown RBP17.11■□□□□ 0.33
NPLOC4-202ENST00000374747 ANP32CO43423 234 aa17.1■□□□□ 0.33
NPLOC4-202ENST00000374747 SOGA1O94964 1423 aa17.1■□□□□ 0.33
NPLOC4-202ENST00000374747 ARID3CA6NKF2 412 aa17.1■□□□□ 0.33
NPLOC4-202ENST00000374747 NEUROD1Q13562 356 aa17.07■□□□□ 0.32
NPLOC4-202ENST00000374747 RUSC2Q8N2Y8 1516 aa17.05■□□□□ 0.32
NPLOC4-202ENST00000374747 GOLGA3Q08378 1498 aa17.05■□□□□ 0.32
NPLOC4-202ENST00000374747 SMARCA2P51531 1590 aa17.04■□□□□ 0.32
NPLOC4-202ENST00000374747 ACIN1Q9UKV3 1341 aaKnown RBP17.04■□□□□ 0.32
NPLOC4-202ENST00000374747 CLIP1P30622 1438 aa17.03■□□□□ 0.32
NPLOC4-202ENST00000374747 KIF27Q86VH2 1401 aa17.02■□□□□ 0.32
NPLOC4-202ENST00000374747 CHMP7Q8WUX9 453 aaPredicted RBP17■□□□□ 0.31
NPLOC4-202ENST00000374747 CEP162Q5TB80 1403 aa16.98■□□□□ 0.31
NPLOC4-202ENST00000374747 ZNF777Q9ULD5 760 aaPredicted RBP16.98■□□□□ 0.31
NPLOC4-202ENST00000374747 ZBTB47Q9UFB7 747 aaPredicted RBP16.95■□□□□ 0.3
NPLOC4-202ENST00000374747 CEP164Q9UPV0 1460 aa16.94■□□□□ 0.3
NPLOC4-202ENST00000374747 ANP32AP39687 249 aaKnown RBP16.94■□□□□ 0.3
NPLOC4-202ENST00000374747 EIF4G1Q04637 1599 aaKnown RBP16.92■□□□□ 0.3
NPLOC4-202ENST00000374747 TNIKQ9UKE5 1360 aa16.92■□□□□ 0.3
NPLOC4-202ENST00000374747 TOP2AP11388 1531 aaKnown RBP16.9■□□□□ 0.3
NPLOC4-202ENST00000374747 NPM1P06748 294 aaKnown RBP eCLIP16.89■□□□□ 0.29
NPLOC4-202ENST00000374747 SMARCA4P51532 1647 aa16.88■□□□□ 0.29
NPLOC4-202ENST00000374747 MTUS2Q5JR59 1369 aa16.87■□□□□ 0.29
NPLOC4-202ENST00000374747 ZNF326Q5BKZ1 582 aaKnown RBP16.87■□□□□ 0.29
NPLOC4-202ENST00000374747 ERCC6Q03468 1493 aa16.86■□□□□ 0.29
NPLOC4-202ENST00000374747 CANXP27824 592 aaKnown RBP16.85■□□□□ 0.29
NPLOC4-202ENST00000374747 ATAD2BQ9ULI0 1458 aa16.79■□□□□ 0.28
NPLOC4-202ENST00000374747 EIF5BO60841 1220 aaKnown RBP16.77■□□□□ 0.28
NPLOC4-202ENST00000374747 CUX2O14529 1486 aa16.77■□□□□ 0.27
NPLOC4-202ENST00000374747 PDS5BQ9NTI5 1447 aa16.76■□□□□ 0.27
NPLOC4-202ENST00000374747 NPM2Q86SE8 214 aaKnown RBP16.76■□□□□ 0.27
NPLOC4-202ENST00000374747 CARMIL1Q5VZK9 1371 aa16.73■□□□□ 0.27
NPLOC4-202ENST00000374747 TONSLQ96HA7 1378 aa16.73■□□□□ 0.27
NPLOC4-202ENST00000374747 TSPY4P0CV99 314 aa16.72■□□□□ 0.27
NPLOC4-202ENST00000374747 TSPY10P0CW01 314 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms