RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 NISCHQ9Y2I1 1504 aa24.55■■□□□ 1.52
RFC4-214ENST00000494047 CCDC180Q9P1Z9 1646 aa21.92■■□□□ 1.1
RFC4-214ENST00000494047 ABCC9O60706 1549 aa21.44■■□□□ 1.02
RFC4-214ENST00000494047 RB1CC1Q8TDY2 1594 aa20.68■□□□□ 0.9
RFC4-214ENST00000494047 NACADO15069 1562 aa20.65■□□□□ 0.9
RFC4-214ENST00000494047 MYO15BQ96JP2 1530 aa20.54■□□□□ 0.88
RFC4-214ENST00000494047 DCAF8L2P0C7V8 631 aa20.51■□□□□ 0.87
RFC4-214ENST00000494047 ZCCHC6Q5VYS8 1495 aaKnown RBP20.42■□□□□ 0.86
RFC4-214ENST00000494047 DCAF1Q9Y4B6 1507 aa20.37■□□□□ 0.85
RFC4-214ENST00000494047 UNC13AQ9UPW8 1703 aa20.14■□□□□ 0.82
RFC4-214ENST00000494047 PABPN1Q86U42 306 aaKnown RBP eCLIP20■□□□□ 0.79
RFC4-214ENST00000494047 BICRAQ9NZM4 1560 aa19.98■□□□□ 0.79
RFC4-214ENST00000494047 SHROOM4Q9ULL8 1493 aa19.91■□□□□ 0.78
RFC4-214ENST00000494047 SCRIBQ14160 1630 aa19.88■□□□□ 0.77
RFC4-214ENST00000494047 DNAJC5BQ9UF47 199 aa19.75■□□□□ 0.75
RFC4-214ENST00000494047 EIF4G1Q04637 1599 aaKnown RBP19.49■□□□□ 0.71
RFC4-214ENST00000494047 CC2D2AQ9P2K1 1620 aa19.43■□□□□ 0.7
RFC4-214ENST00000494047 SUPT5HO00267 1087 aaKnown RBP19.37■□□□□ 0.69
RFC4-214ENST00000494047 CECR2Q9BXF3 1484 aa19.33■□□□□ 0.69
RFC4-214ENST00000494047 BAZ1AQ9NRL2 1556 aaPredicted RBP19.07■□□□□ 0.64
RFC4-214ENST00000494047 SMARCA4P51532 1647 aa19.06■□□□□ 0.64
RFC4-214ENST00000494047 CHIC1Q5VXU3 224 aa19.05■□□□□ 0.64
RFC4-214ENST00000494047 NCAPD3P42695 1498 aa19.04■□□□□ 0.64
RFC4-214ENST00000494047 SMARCA2P51531 1590 aa19.01■□□□□ 0.63
RFC4-214ENST00000494047 ATAD2BQ9ULI0 1458 aa18.99■□□□□ 0.63
RFC4-214ENST00000494047 HMGXB3Q12766 1538 aa18.93■□□□□ 0.62
RFC4-214ENST00000494047 PEG3Q9GZU2 1588 aa18.92■□□□□ 0.62
RFC4-214ENST00000494047 MROH2BQ7Z745 1585 aa18.86■□□□□ 0.61
RFC4-214ENST00000494047 BAZ1BQ9UIG0 1483 aaKnown RBP18.84■□□□□ 0.61
RFC4-214ENST00000494047 RSF1Q96T23 1441 aaPredicted RBP18.72■□□□□ 0.59
RFC4-214ENST00000494047 WIZO95785 1651 aa18.65■□□□□ 0.58
RFC4-214ENST00000494047 HRCP23327 699 aa18.57■□□□□ 0.56
RFC4-214ENST00000494047 LAMC3Q9Y6N6 1575 aa18.56■□□□□ 0.56
RFC4-214ENST00000494047 ERCC6Q03468 1493 aa18.56■□□□□ 0.56
RFC4-214ENST00000494047 NESP48681 1621 aa18.5■□□□□ 0.55
RFC4-214ENST00000494047 TOP2AP11388 1531 aaKnown RBP18.5■□□□□ 0.55
RFC4-214ENST00000494047 CADPSQ9ULU8 1353 aa18.47■□□□□ 0.55
RFC4-214ENST00000494047 PDS5BQ9NTI5 1447 aa18.45■□□□□ 0.54
RFC4-214ENST00000494047 CUX2O14529 1486 aa18.44■□□□□ 0.54
RFC4-214ENST00000494047 CFTRP13569 1480 aa18.32■□□□□ 0.52
RFC4-214ENST00000494047 TRIM26Q12899 539 aaPredicted RBP18.32■□□□□ 0.52
RFC4-214ENST00000494047 TRIM41Q8WV44 630 aa18.32■□□□□ 0.52
RFC4-214ENST00000494047 KIF21AQ7Z4S6 1674 aa18.32■□□□□ 0.52
RFC4-214ENST00000494047 PCGF6Q9BYE7 350 aa18.3■□□□□ 0.52
RFC4-214ENST00000494047 THOC2Q8NI27 1593 aaKnown RBP18.29■□□□□ 0.52
RFC4-214ENST00000494047 CCDC88BA6NC98 1476 aa18.26■□□□□ 0.51
RFC4-214ENST00000494047 ZEB1P37275 1124 aaPredicted RBP18.24■□□□□ 0.51
RFC4-214ENST00000494047 FANCD2Q9BXW9 1451 aa18.23■□□□□ 0.51
RFC4-214ENST00000494047 MRC2Q9UBG0 1479 aa18.23■□□□□ 0.51
RFC4-214ENST00000494047 CEP164Q9UPV0 1460 aa18.23■□□□□ 0.51
RFC4-214ENST00000494047 PRDM2Q13029 1718 aa18.2■□□□□ 0.5
RFC4-214ENST00000494047 WDR62O43379 1518 aa18.16■□□□□ 0.5
RFC4-214ENST00000494047 LOC105371045A0A1W2PR82 267 aa18.16■□□□□ 0.5
RFC4-214ENST00000494047 EEA1Q15075 1411 aa18.07■□□□□ 0.48
RFC4-214ENST00000494047 DNAJC5Q9H3Z4 198 aa18.05■□□□□ 0.48
RFC4-214ENST00000494047 URB2Q14146 1524 aaKnown RBP18.02■□□□□ 0.47
RFC4-214ENST00000494047 ABCC8Q09428 1581 aa18.02■□□□□ 0.47
RFC4-214ENST00000494047 TOPBP1Q92547 1522 aa17.92■□□□□ 0.46
RFC4-214ENST00000494047 DNMBPQ6XZF7 1577 aa17.91■□□□□ 0.46
RFC4-214ENST00000494047 WRNQ14191 1432 aaPredicted RBP eCLIP17.89■□□□□ 0.45
RFC4-214ENST00000494047 IFT140Q96RY7 1462 aa17.87■□□□□ 0.45
RFC4-214ENST00000494047 TNIKQ9UKE5 1360 aa17.77■□□□□ 0.44
RFC4-214ENST00000494047 FAM9AQ8IZU1 332 aaPredicted RBP17.77■□□□□ 0.43
RFC4-214ENST00000494047 POLA1P09884 1462 aaPredicted RBP17.75■□□□□ 0.43
RFC4-214ENST00000494047 TARBP1Q13395 1621 aaKnown RBP17.72■□□□□ 0.43
RFC4-214ENST00000494047 GOLGA3Q08378 1498 aa17.71■□□□□ 0.43
RFC4-214ENST00000494047 CUX1P39880 1505 aa17.71■□□□□ 0.43
RFC4-214ENST00000494047 ZNF608Q9ULD9 1512 aaPredicted RBP17.71■□□□□ 0.43
RFC4-214ENST00000494047 SOGA1O94964 1423 aa17.71■□□□□ 0.42
RFC4-214ENST00000494047 KIF21BO75037 1637 aa17.69■□□□□ 0.42
RFC4-214ENST00000494047 WDR97A6NE52 1622 aa17.69■□□□□ 0.42
RFC4-214ENST00000494047 FGD5Q6ZNL6 1462 aa17.68■□□□□ 0.42
RFC4-214ENST00000494047 CEP162Q5TB80 1403 aa17.66■□□□□ 0.42
RFC4-214ENST00000494047 EIF4G3O43432 1585 aaKnown RBP17.66■□□□□ 0.42
RFC4-214ENST00000494047 PPARGC1BQ86YN6 1023 aaKnown RBP17.66■□□□□ 0.42
RFC4-214ENST00000494047 OSCARQ8IYS5 282 aa17.66■□□□□ 0.42
RFC4-214ENST00000494047 RAD54L2Q9Y4B4 1467 aa17.63■□□□□ 0.41
RFC4-214ENST00000494047 AQRO60306 1485 aaKnown RBP eCLIP17.62■□□□□ 0.412e-7■■■■□ 23.4
RFC4-214ENST00000494047 CSRNP3Q8WYN3 585 aa17.6■□□□□ 0.41
RFC4-214ENST00000494047 TOP2BQ02880 1626 aa17.58■□□□□ 0.4
RFC4-214ENST00000494047 BIVM-ERCC5R4GMW8 1640 aa17.57■□□□□ 0.4
RFC4-214ENST00000494047 TDRD9Q8NDG6 1382 aaKnown RBP17.57■□□□□ 0.4
RFC4-214ENST00000494047 ABCA10Q8WWZ4 1543 aa17.55■□□□□ 0.4
RFC4-214ENST00000494047 GRIN2BQ13224 1484 aa17.52■□□□□ 0.4
RFC4-214ENST00000494047 MAGI1Q96QZ7 1491 aaPredicted RBP17.51■□□□□ 0.39
RFC4-214ENST00000494047 SYNJ1O43426 1573 aa17.51■□□□□ 0.39
RFC4-214ENST00000494047 GAPVD1Q14C86 1478 aa17.49■□□□□ 0.39
RFC4-214ENST00000494047 CHD1O14646 1710 aa17.46■□□□□ 0.39
RFC4-214ENST00000494047 ABCA5Q8WWZ7 1642 aa17.46■□□□□ 0.39
RFC4-214ENST00000494047 ERICH3Q5RHP9 1530 aa17.46■□□□□ 0.39
RFC4-214ENST00000494047 SNAPC4Q5SXM2 1469 aa17.46■□□□□ 0.39
RFC4-214ENST00000494047 FBLN2P98095 1184 aa17.45■□□□□ 0.38
RFC4-214ENST00000494047 PBRM1Q86U86 1689 aa17.44■□□□□ 0.38
RFC4-214ENST00000494047 CHMP7Q8WUX9 453 aaPredicted RBP17.43■□□□□ 0.38
RFC4-214ENST00000494047 SYNJ2O15056 1496 aa17.42■□□□□ 0.38
RFC4-214ENST00000494047 UBTFP17480 764 aaKnown RBP17.4■□□□□ 0.38
RFC4-214ENST00000494047 CCER1Q8TC90 406 aaPredicted RBP17.4■□□□□ 0.38
RFC4-214ENST00000494047 VPS8Q8N3P4 1428 aa17.39■□□□□ 0.37
RFC4-214ENST00000494047 CLIP1P30622 1438 aa17.37■□□□□ 0.37
RFC4-214ENST00000494047 RUSC2Q8N2Y8 1516 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms