RNA–Protein interactions for RNA: ENST00000375740.7

MSH5-202, Transcript of mutS homolog 5, humanhuman

TSL 1 (best) BASIC

Gene MSH5, Length 2,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-202ENST00000375740 NISCHQ9Y2I1 1504 aa29.96■■■□□ 2.39
MSH5-202ENST00000375740 CCDC180Q9P1Z9 1646 aa25.71■■□□□ 1.71
MSH5-202ENST00000375740 ZCCHC6Q5VYS8 1495 aaKnown RBP25.25■■□□□ 1.63
MSH5-202ENST00000375740 SHROOM4Q9ULL8 1493 aa25.12■■□□□ 1.61
MSH5-202ENST00000375740 DCAF8L2P0C7V8 631 aa24.85■■□□□ 1.57
MSH5-202ENST00000375740 DCAF1Q9Y4B6 1507 aa24.64■■□□□ 1.53
MSH5-202ENST00000375740 SUPT5HO00267 1087 aaKnown RBP24.48■■□□□ 1.51
MSH5-202ENST00000375740 MYO15BQ96JP2 1530 aa24.09■■□□□ 1.45
MSH5-202ENST00000375740 ABCC9O60706 1549 aa24.03■■□□□ 1.44
MSH5-202ENST00000375740 SCRIBQ14160 1630 aa23.93■■□□□ 1.42
MSH5-202ENST00000375740 NACADO15069 1562 aa23.85■■□□□ 1.41
MSH5-202ENST00000375740 CHIC1Q5VXU3 224 aa23.67■■□□□ 1.38
MSH5-202ENST00000375740 RSF1Q96T23 1441 aaPredicted RBP23.53■■□□□ 1.36
MSH5-202ENST00000375740 RB1CC1Q8TDY2 1594 aa23.53■■□□□ 1.36
MSH5-202ENST00000375740 CECR2Q9BXF3 1484 aa23.35■■□□□ 1.33
MSH5-202ENST00000375740 MROH2BQ7Z745 1585 aa23.24■■□□□ 1.31
MSH5-202ENST00000375740 UNC13AQ9UPW8 1703 aa23.16■■□□□ 1.3
MSH5-202ENST00000375740 WIZO95785 1651 aa23.1■■□□□ 1.29
MSH5-202ENST00000375740 BAZ1AQ9NRL2 1556 aaPredicted RBP23.05■■□□□ 1.28
MSH5-202ENST00000375740 LOC105371045A0A1W2PR82 267 aa22.91■■□□□ 1.26
MSH5-202ENST00000375740 SMARCA4P51532 1647 aa22.89■■□□□ 1.26
MSH5-202ENST00000375740 PABPN1Q86U42 306 aaKnown RBP eCLIP22.89■■□□□ 1.252e-6■■■□□ 15.7
MSH5-202ENST00000375740 BICRAQ9NZM4 1560 aa22.88■■□□□ 1.25
MSH5-202ENST00000375740 TRIM41Q8WV44 630 aa22.88■■□□□ 1.25
MSH5-202ENST00000375740 HRCP23327 699 aa22.86■■□□□ 1.25
MSH5-202ENST00000375740 TOP2AP11388 1531 aaKnown RBP22.76■■□□□ 1.23
MSH5-202ENST00000375740 CCDC88BA6NC98 1476 aa22.64■■□□□ 1.21
MSH5-202ENST00000375740 EIF4G1Q04637 1599 aaKnown RBP22.62■■□□□ 1.21
MSH5-202ENST00000375740 SMARCA2P51531 1590 aa22.61■■□□□ 1.21
MSH5-202ENST00000375740 FAM9AQ8IZU1 332 aaPredicted RBP22.61■■□□□ 1.21
MSH5-202ENST00000375740 PPARGC1BQ86YN6 1023 aaKnown RBP22.56■■□□□ 1.2
MSH5-202ENST00000375740 PEG3Q9GZU2 1588 aa22.51■■□□□ 1.19
MSH5-202ENST00000375740 PCGF6Q9BYE7 350 aa22.47■■□□□ 1.19
MSH5-202ENST00000375740 ABCC8Q09428 1581 aa22.41■■□□□ 1.18
MSH5-202ENST00000375740 ATAD2BQ9ULI0 1458 aa22.4■■□□□ 1.18
MSH5-202ENST00000375740 EHMT2Q96KQ7 1210 aa22.37■■□□□ 1.17
MSH5-202ENST00000375740 BAZ1BQ9UIG0 1483 aaKnown RBP22.3■■□□□ 1.16
MSH5-202ENST00000375740 TRIM26Q12899 539 aaPredicted RBP22.2■■□□□ 1.14
MSH5-202ENST00000375740 SOGA1O94964 1423 aa22.12■■□□□ 1.13
MSH5-202ENST00000375740 WRNQ14191 1432 aaPredicted RBP eCLIP22.11■■□□□ 1.13
MSH5-202ENST00000375740 NCAPD3P42695 1498 aa22.06■■□□□ 1.12
MSH5-202ENST00000375740 RUSC2Q8N2Y8 1516 aa22.04■■□□□ 1.12
MSH5-202ENST00000375740 HMGXB3Q12766 1538 aa22.02■■□□□ 1.12
MSH5-202ENST00000375740 EEA1Q15075 1411 aa22.01■■□□□ 1.11
MSH5-202ENST00000375740 SYNJ1O43426 1573 aa22.01■■□□□ 1.11
MSH5-202ENST00000375740 CSRNP3Q8WYN3 585 aa22.01■■□□□ 1.11
MSH5-202ENST00000375740 PELP1Q8IZL8 1130 aaKnown RBP21.9■■□□□ 1.1
MSH5-202ENST00000375740 TNIKQ9UKE5 1360 aa21.88■■□□□ 1.09
MSH5-202ENST00000375740 UBTFP17480 764 aaKnown RBP21.84■■□□□ 1.09
MSH5-202ENST00000375740 CEP162Q5TB80 1403 aa21.84■■□□□ 1.09
MSH5-202ENST00000375740 TOP2BQ02880 1626 aa21.81■■□□□ 1.08
MSH5-202ENST00000375740 GOLGA3Q08378 1498 aa21.81■■□□□ 1.08
MSH5-202ENST00000375740 CFTRP13569 1480 aa21.75■■□□□ 1.07
MSH5-202ENST00000375740 BIVM-ERCC5R4GMW8 1640 aa21.75■■□□□ 1.07
MSH5-202ENST00000375740 CEP164Q9UPV0 1460 aa21.73■■□□□ 1.07
MSH5-202ENST00000375740 SCAF1Q9H7N4 1312 aaKnown RBP21.73■■□□□ 1.07
MSH5-202ENST00000375740 KIF21BO75037 1637 aa21.72■■□□□ 1.07
MSH5-202ENST00000375740 CC2D2AQ9P2K1 1620 aa21.68■■□□□ 1.06
MSH5-202ENST00000375740 CUX1P39880 1505 aa21.67■■□□□ 1.06
MSH5-202ENST00000375740 RAPGEF2Q9Y4G8 1499 aa21.61■■□□□ 1.05
MSH5-202ENST00000375740 PRDM2Q13029 1718 aa21.59■■□□□ 1.05
MSH5-202ENST00000375740 CADPSQ9ULU8 1353 aa21.59■■□□□ 1.05
MSH5-202ENST00000375740 ZEB1P37275 1124 aaPredicted RBP21.56■■□□□ 1.04
MSH5-202ENST00000375740 TTBK1Q5TCY1 1321 aaPredicted RBP21.55■■□□□ 1.04
MSH5-202ENST00000375740 CLIP1P30622 1438 aa21.53■■□□□ 1.04
MSH5-202ENST00000375740 PRXQ9BXM0 1461 aa21.48■■□□□ 1.03
MSH5-202ENST00000375740 KIF27Q86VH2 1401 aa21.48■■□□□ 1.03
MSH5-202ENST00000375740 ERICH3Q5RHP9 1530 aa21.45■■□□□ 1.02
MSH5-202ENST00000375740 RANGAP1P46060 587 aaPredicted RBP21.44■■□□□ 1.02
MSH5-202ENST00000375740 VPS8Q8N3P4 1428 aa21.4■■□□□ 1.02
MSH5-202ENST00000375740 FANCD2Q9BXW9 1451 aa21.36■■□□□ 1.01
MSH5-202ENST00000375740 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.34■■□□□ 1.01
MSH5-202ENST00000375740 FGD5Q6ZNL6 1462 aa21.34■■□□□ 1.01
MSH5-202ENST00000375740 CUX2O14529 1486 aa21.33■■□□□ 1.01
MSH5-202ENST00000375740 NESP48681 1621 aa21.3■■□□□ 1
MSH5-202ENST00000375740 IGF1RP08069 1367 aa21.29■■□□□ 1
MSH5-202ENST00000375740 APLP2Q06481 763 aa21.28■■□□□ 1
MSH5-202ENST00000375740 CCER1Q8TC90 406 aaPredicted RBP21.28■■□□□ 1
MSH5-202ENST00000375740 ARAP1Q96P48 1450 aa21.23■□□□□ 0.99
MSH5-202ENST00000375740 DNMBPQ6XZF7 1577 aa21.21■□□□□ 0.99
MSH5-202ENST00000375740 TOPBP1Q92547 1522 aa21.19■□□□□ 0.98
MSH5-202ENST00000375740 CARMIL1Q5VZK9 1371 aa21.18■□□□□ 0.98
MSH5-202ENST00000375740 DNAJC5BQ9UF47 199 aa21.18■□□□□ 0.98
MSH5-202ENST00000375740 LAMC3Q9Y6N6 1575 aa21.18■□□□□ 0.98
MSH5-202ENST00000375740 RAD54L2Q9Y4B4 1467 aa21.16■□□□□ 0.98
MSH5-202ENST00000375740 POLA1P09884 1462 aaPredicted RBP21.14■□□□□ 0.97
MSH5-202ENST00000375740 NEUROD1Q13562 356 aa21.13■□□□□ 0.97
MSH5-202ENST00000375740 ARHGAP35Q9NRY4 1499 aa21.12■□□□□ 0.97
MSH5-202ENST00000375740 ACIN1Q9UKV3 1341 aaKnown RBP21.11■□□□□ 0.97
MSH5-202ENST00000375740 ABCA10Q8WWZ4 1543 aa21.1■□□□□ 0.97
MSH5-202ENST00000375740 HNRNPUL2Q1KMD3 747 aaKnown RBP21.09■□□□□ 0.97
MSH5-202ENST00000375740 URB2Q14146 1524 aaKnown RBP21.07■□□□□ 0.96
MSH5-202ENST00000375740 KANK4Q5T7N3 995 aaPredicted RBP21.05■□□□□ 0.96
MSH5-202ENST00000375740 PDS5BQ9NTI5 1447 aa21.04■□□□□ 0.96
MSH5-202ENST00000375740 GTF3C3Q9Y5Q9 886 aa20.99■□□□□ 0.95
MSH5-202ENST00000375740 KIF21AQ7Z4S6 1674 aa20.96■□□□□ 0.95
MSH5-202ENST00000375740 MYT1Q01538 1121 aa20.96■□□□□ 0.95
MSH5-202ENST00000375740 WDR97A6NE52 1622 aa20.95■□□□□ 0.94
MSH5-202ENST00000375740 CUL7Q14999 1698 aa20.93■□□□□ 0.94
MSH5-202ENST00000375740 TDRD9Q8NDG6 1382 aaKnown RBP20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms