RNA–Protein interactions for RNA: ENST00000573328.5

NPLOC4-212, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2

Gene NPLOC4, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-212ENST00000573328 NISCHQ9Y2I1 1504 aa23.87■■□□□ 1.41
NPLOC4-212ENST00000573328 CCDC180Q9P1Z9 1646 aa21.44■■□□□ 1.02
NPLOC4-212ENST00000573328 ABCC9O60706 1549 aa21.21■□□□□ 0.99
NPLOC4-212ENST00000573328 RB1CC1Q8TDY2 1594 aa20.29■□□□□ 0.84
NPLOC4-212ENST00000573328 NACADO15069 1562 aa20.17■□□□□ 0.82
NPLOC4-212ENST00000573328 DCAF8L2P0C7V8 631 aa20.1■□□□□ 0.81
NPLOC4-212ENST00000573328 UNC13AQ9UPW8 1703 aa19.93■□□□□ 0.78
NPLOC4-212ENST00000573328 MYO15BQ96JP2 1530 aa19.89■□□□□ 0.77
NPLOC4-212ENST00000573328 ZCCHC6Q5VYS8 1495 aaKnown RBP19.84■□□□□ 0.77
NPLOC4-212ENST00000573328 PABPN1Q86U42 306 aaKnown RBP eCLIP19.72■□□□□ 0.75
NPLOC4-212ENST00000573328 DCAF1Q9Y4B6 1507 aa19.71■□□□□ 0.75
NPLOC4-212ENST00000573328 BICRAQ9NZM4 1560 aa19.65■□□□□ 0.74
NPLOC4-212ENST00000573328 DNAJC5BQ9UF47 199 aa19.6■□□□□ 0.73
NPLOC4-212ENST00000573328 SCRIBQ14160 1630 aa19.56■□□□□ 0.72
NPLOC4-212ENST00000573328 SHROOM4Q9ULL8 1493 aa19.4■□□□□ 0.7
NPLOC4-212ENST00000573328 CC2D2AQ9P2K1 1620 aa19.19■□□□□ 0.66
NPLOC4-212ENST00000573328 EIF4G1Q04637 1599 aaKnown RBP19.18■□□□□ 0.66
NPLOC4-212ENST00000573328 CECR2Q9BXF3 1484 aa19.07■□□□□ 0.64
NPLOC4-212ENST00000573328 SMARCA4P51532 1647 aa18.65■□□□□ 0.58
NPLOC4-212ENST00000573328 BAZ1AQ9NRL2 1556 aaPredicted RBP18.56■□□□□ 0.56
NPLOC4-212ENST00000573328 SMARCA2P51531 1590 aa18.55■□□□□ 0.56
NPLOC4-212ENST00000573328 NCAPD3P42695 1498 aa18.54■□□□□ 0.56
NPLOC4-212ENST00000573328 ATAD2BQ9ULI0 1458 aa18.54■□□□□ 0.56
NPLOC4-212ENST00000573328 HMGXB3Q12766 1538 aa18.5■□□□□ 0.55
NPLOC4-212ENST00000573328 BAZ1BQ9UIG0 1483 aaKnown RBP18.44■□□□□ 0.54
NPLOC4-212ENST00000573328 PEG3Q9GZU2 1588 aa18.41■□□□□ 0.54
NPLOC4-212ENST00000573328 MROH2BQ7Z745 1585 aa18.4■□□□□ 0.54
NPLOC4-212ENST00000573328 ERCC6Q03468 1493 aa18.33■□□□□ 0.53
NPLOC4-212ENST00000573328 WIZO95785 1651 aa18.26■□□□□ 0.51
NPLOC4-212ENST00000573328 NESP48681 1621 aa18.26■□□□□ 0.51
NPLOC4-212ENST00000573328 CUX2O14529 1486 aa18.2■□□□□ 0.5
NPLOC4-212ENST00000573328 LAMC3Q9Y6N6 1575 aa18.19■□□□□ 0.5
NPLOC4-212ENST00000573328 KIF21AQ7Z4S6 1674 aa18.14■□□□□ 0.49
NPLOC4-212ENST00000573328 THOC2Q8NI27 1593 aaKnown RBP18.08■□□□□ 0.49
NPLOC4-212ENST00000573328 RSF1Q96T23 1441 aaPredicted RBP18.05■□□□□ 0.48
NPLOC4-212ENST00000573328 PDS5BQ9NTI5 1447 aa18.04■□□□□ 0.48
NPLOC4-212ENST00000573328 TOP2AP11388 1531 aaKnown RBP18.01■□□□□ 0.47
NPLOC4-212ENST00000573328 CADPSQ9ULU8 1353 aa18■□□□□ 0.47
NPLOC4-212ENST00000573328 MRC2Q9UBG0 1479 aa17.89■□□□□ 0.45
NPLOC4-212ENST00000573328 PRDM2Q13029 1718 aa17.89■□□□□ 0.45
NPLOC4-212ENST00000573328 DNAJC5Q9H3Z4 198 aa17.88■□□□□ 0.45
NPLOC4-212ENST00000573328 CEP164Q9UPV0 1460 aa17.88■□□□□ 0.45
NPLOC4-212ENST00000573328 FANCD2Q9BXW9 1451 aa17.85■□□□□ 0.45
NPLOC4-212ENST00000573328 WDR62O43379 1518 aa17.84■□□□□ 0.45
NPLOC4-212ENST00000573328 CFTRP13569 1480 aa17.84■□□□□ 0.45
NPLOC4-212ENST00000573328 CCDC88BA6NC98 1476 aa17.75■□□□□ 0.43
NPLOC4-212ENST00000573328 URB2Q14146 1524 aaKnown RBP17.67■□□□□ 0.42
NPLOC4-212ENST00000573328 TOPBP1Q92547 1522 aa17.53■□□□□ 0.4
NPLOC4-212ENST00000573328 DNMBPQ6XZF7 1577 aa17.52■□□□□ 0.39
NPLOC4-212ENST00000573328 ABCC8Q09428 1581 aa17.5■□□□□ 0.39
NPLOC4-212ENST00000573328 IFT140Q96RY7 1462 aa17.48■□□□□ 0.39
NPLOC4-212ENST00000573328 SUPT5HO00267 1087 aaKnown RBP17.44■□□□□ 0.38
NPLOC4-212ENST00000573328 ZNF608Q9ULD9 1512 aaPredicted RBP17.42■□□□□ 0.38
NPLOC4-212ENST00000573328 EIF4G3O43432 1585 aaKnown RBP17.42■□□□□ 0.38
NPLOC4-212ENST00000573328 TARBP1Q13395 1621 aaKnown RBP17.38■□□□□ 0.37
NPLOC4-212ENST00000573328 POLA1P09884 1462 aaPredicted RBP17.36■□□□□ 0.37
NPLOC4-212ENST00000573328 OSCARQ8IYS5 282 aa17.34■□□□□ 0.37
NPLOC4-212ENST00000573328 CHD1O14646 1710 aa17.31■□□□□ 0.36
NPLOC4-212ENST00000573328 FGD5Q6ZNL6 1462 aa17.3■□□□□ 0.36
NPLOC4-212ENST00000573328 TRIM41Q8WV44 630 aa17.29■□□□□ 0.36
NPLOC4-212ENST00000573328 CUX1P39880 1505 aa17.29■□□□□ 0.36
NPLOC4-212ENST00000573328 RAD54L2Q9Y4B4 1467 aa17.29■□□□□ 0.36
NPLOC4-212ENST00000573328 AQRO60306 1485 aaKnown RBP eCLIP17.28■□□□□ 0.362e-11■■■□□ 16.6
NPLOC4-212ENST00000573328 SOGA1O94964 1423 aa17.26■□□□□ 0.35
NPLOC4-212ENST00000573328 WDR97A6NE52 1622 aa17.24■□□□□ 0.35
NPLOC4-212ENST00000573328 TDRD9Q8NDG6 1382 aaKnown RBP17.2■□□□□ 0.34
NPLOC4-212ENST00000573328 RIMBP3CA6NJZ7 1639 aa17.2■□□□□ 0.34
NPLOC4-212ENST00000573328 RIMBP3BA6NNM3 1639 aa17.2■□□□□ 0.34
NPLOC4-212ENST00000573328 RIMBP3Q9UFD9 1639 aa17.2■□□□□ 0.34
NPLOC4-212ENST00000573328 PBRM1Q86U86 1689 aa17.19■□□□□ 0.34
NPLOC4-212ENST00000573328 FBLN2P98095 1184 aa17.17■□□□□ 0.34
NPLOC4-212ENST00000573328 SNAPC4Q5SXM2 1469 aa17.16■□□□□ 0.34
NPLOC4-212ENST00000573328 ARHGEF11O15085 1522 aa17.13■□□□□ 0.33
NPLOC4-212ENST00000573328 BIVM-ERCC5R4GMW8 1640 aa17.13■□□□□ 0.33
NPLOC4-212ENST00000573328 GRIN2BQ13224 1484 aa17.12■□□□□ 0.33
NPLOC4-212ENST00000573328 MAGI1Q96QZ7 1491 aaPredicted RBP17.11■□□□□ 0.33
NPLOC4-212ENST00000573328 TOP2BQ02880 1626 aa17.1■□□□□ 0.33
NPLOC4-212ENST00000573328 ABCA5Q8WWZ7 1642 aa17.09■□□□□ 0.33
NPLOC4-212ENST00000573328 SYNJ1O43426 1573 aa17.08■□□□□ 0.32
NPLOC4-212ENST00000573328 ABCA10Q8WWZ4 1543 aa17.08■□□□□ 0.32
NPLOC4-212ENST00000573328 GAPVD1Q14C86 1478 aa17.08■□□□□ 0.32
NPLOC4-212ENST00000573328 WRNQ14191 1432 aaPredicted RBP eCLIP17.06■□□□□ 0.32
NPLOC4-212ENST00000573328 CHMP7Q8WUX9 453 aaPredicted RBP17.05■□□□□ 0.32
NPLOC4-212ENST00000573328 SYNJ2O15056 1496 aa17.04■□□□□ 0.32
NPLOC4-212ENST00000573328 CLASP1Q7Z460 1538 aa17.01■□□□□ 0.31
NPLOC4-212ENST00000573328 ADAMTS12P58397 1594 aa16.96■□□□□ 0.31
NPLOC4-212ENST00000573328 ARAP1Q96P48 1450 aa16.95■□□□□ 0.3
NPLOC4-212ENST00000573328 CYB5RLQ6IPT4 315 aa16.94■□□□□ 0.3
NPLOC4-212ENST00000573328 GRIN2AQ12879 1464 aa16.9■□□□□ 0.3
NPLOC4-212ENST00000573328 ERICH3Q5RHP9 1530 aa16.9■□□□□ 0.3
NPLOC4-212ENST00000573328 FHAD1B1AJZ9 1412 aa16.86■□□□□ 0.29
NPLOC4-212ENST00000573328 CEP170Q5SW79 1584 aa16.85■□□□□ 0.29
NPLOC4-212ENST00000573328 NUP160Q12769 1436 aa16.8■□□□□ 0.28
NPLOC4-212ENST00000573328 SHROOM2Q13796 1616 aa16.76■□□□□ 0.27
NPLOC4-212ENST00000573328 ERCC6L2Q5T890 1561 aa16.76■□□□□ 0.27
NPLOC4-212ENST00000573328 CUL7Q14999 1698 aa16.75■□□□□ 0.27
NPLOC4-212ENST00000573328 TRHP20396 242 aaPredicted RBP16.75■□□□□ 0.27
NPLOC4-212ENST00000573328 KIF27Q86VH2 1401 aa16.73■□□□□ 0.27
NPLOC4-212ENST00000573328 RUSC2Q8N2Y8 1516 aa16.72■□□□□ 0.27
NPLOC4-212ENST00000573328 PRG4Q92954 1404 aaPredicted RBP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms