Protein–RNA interactions for Protein: Q9Y6M4

CSNK1G3, Casein kinase I isoform gamma-3, humanhuman

Predictions only

Length 447 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1G3Q9Y6M4 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CSNK1G3Q9Y6M4 TSPY9P-201ENST00000440215 945 ntBASIC23.18■■□□□ 1.3
CSNK1G3Q9Y6M4 TSPY11P-201ENST00000442607 1045 ntBASIC23.18■■□□□ 1.3
CSNK1G3Q9Y6M4 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CSNK1G3Q9Y6M4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CSNK1G3Q9Y6M4 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CSNK1G3Q9Y6M4 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CSNK1G3Q9Y6M4 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC23.17■■□□□ 1.3
CSNK1G3Q9Y6M4 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.17■■□□□ 1.3
CSNK1G3Q9Y6M4 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CSNK1G3Q9Y6M4 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.17■■□□□ 1.3
CSNK1G3Q9Y6M4 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.17■■□□□ 1.3
CSNK1G3Q9Y6M4 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CSNK1G3Q9Y6M4 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.17■■□□□ 1.3
CSNK1G3Q9Y6M4 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CSNK1G3Q9Y6M4 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.17■■□□□ 1.3
CSNK1G3Q9Y6M4 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CSNK1G3Q9Y6M4 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CSNK1G3Q9Y6M4 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.16■■□□□ 1.3
CSNK1G3Q9Y6M4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
CSNK1G3Q9Y6M4 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.16■■□□□ 1.3
CSNK1G3Q9Y6M4 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.15■■□□□ 1.3
CSNK1G3Q9Y6M4 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CSNK1G3Q9Y6M4 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.15■■□□□ 1.3
CSNK1G3Q9Y6M4 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
CSNK1G3Q9Y6M4 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
CSNK1G3Q9Y6M4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CSNK1G3Q9Y6M4 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.14■■□□□ 1.29
CSNK1G3Q9Y6M4 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.14■■□□□ 1.29
CSNK1G3Q9Y6M4 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
CSNK1G3Q9Y6M4 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CSNK1G3Q9Y6M4 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CSNK1G3Q9Y6M4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC23.13■■□□□ 1.29
CSNK1G3Q9Y6M4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CSNK1G3Q9Y6M4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CSNK1G3Q9Y6M4 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CSNK1G3Q9Y6M4 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CSNK1G3Q9Y6M4 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CSNK1G3Q9Y6M4 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CSNK1G3Q9Y6M4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC23.12■■□□□ 1.29
CSNK1G3Q9Y6M4 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CSNK1G3Q9Y6M4 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CSNK1G3Q9Y6M4 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
CSNK1G3Q9Y6M4 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CSNK1G3Q9Y6M4 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.11■■□□□ 1.29
CSNK1G3Q9Y6M4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
CSNK1G3Q9Y6M4 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
CSNK1G3Q9Y6M4 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CSNK1G3Q9Y6M4 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CSNK1G3Q9Y6M4 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CSNK1G3Q9Y6M4 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CSNK1G3Q9Y6M4 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CSNK1G3Q9Y6M4 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.1■■□□□ 1.29
CSNK1G3Q9Y6M4 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
CSNK1G3Q9Y6M4 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.1■■□□□ 1.29
CSNK1G3Q9Y6M4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.1■■□□□ 1.29
CSNK1G3Q9Y6M4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.1■■□□□ 1.29
CSNK1G3Q9Y6M4 AC135731.1-201ENST00000569415 2548 ntBASIC23.09■■□□□ 1.29
CSNK1G3Q9Y6M4 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.09■■□□□ 1.29
CSNK1G3Q9Y6M4 AC010997.5-201ENST00000609182 354 ntBASIC23.09■■□□□ 1.29
CSNK1G3Q9Y6M4 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CSNK1G3Q9Y6M4 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC23.09■■□□□ 1.29
CSNK1G3Q9Y6M4 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
CSNK1G3Q9Y6M4 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.08■■□□□ 1.29
CSNK1G3Q9Y6M4 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
CSNK1G3Q9Y6M4 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.08■■□□□ 1.29
CSNK1G3Q9Y6M4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.08■■□□□ 1.29
CSNK1G3Q9Y6M4 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.08■■□□□ 1.29
CSNK1G3Q9Y6M4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.08■■□□□ 1.28
CSNK1G3Q9Y6M4 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.07■■□□□ 1.28
CSNK1G3Q9Y6M4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.07■■□□□ 1.28
CSNK1G3Q9Y6M4 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CSNK1G3Q9Y6M4 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
CSNK1G3Q9Y6M4 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CSNK1G3Q9Y6M4 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CSNK1G3Q9Y6M4 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.06■■□□□ 1.28
CSNK1G3Q9Y6M4 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.06■■□□□ 1.28
CSNK1G3Q9Y6M4 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.06■■□□□ 1.28
CSNK1G3Q9Y6M4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC23.06■■□□□ 1.28
CSNK1G3Q9Y6M4 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.06■■□□□ 1.28
CSNK1G3Q9Y6M4 MIR6724-1-201ENST00000616420 92 ntBASIC23.06■■□□□ 1.28
CSNK1G3Q9Y6M4 MIR6724-2-201ENST00000616483 92 ntBASIC23.06■■□□□ 1.28
CSNK1G3Q9Y6M4 MIR6724-4-201ENST00000617390 92 ntBASIC23.06■■□□□ 1.28
CSNK1G3Q9Y6M4 MIR6724-3-201ENST00000622482 92 ntBASIC23.06■■□□□ 1.28
CSNK1G3Q9Y6M4 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CSNK1G3Q9Y6M4 FOXO3B-201ENST00000395675 1928 ntBASIC23.06■■□□□ 1.28
CSNK1G3Q9Y6M4 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CSNK1G3Q9Y6M4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.05■■□□□ 1.28
CSNK1G3Q9Y6M4 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.05■■□□□ 1.28
CSNK1G3Q9Y6M4 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.05■■□□□ 1.28
CSNK1G3Q9Y6M4 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CSNK1G3Q9Y6M4 MTDHP2-201ENST00000601468 714 ntBASIC23.05■■□□□ 1.28
CSNK1G3Q9Y6M4 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CSNK1G3Q9Y6M4 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CSNK1G3Q9Y6M4 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CSNK1G3Q9Y6M4 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
CSNK1G3Q9Y6M4 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CSNK1G3Q9Y6M4 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CSNK1G3Q9Y6M4 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CSNK1G3Q9Y6M4 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms