Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSMD1Q96PZ7 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
CSMD1Q96PZ7 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.38■□□□□ 0.85
CSMD1Q96PZ7 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.38■□□□□ 0.85
CSMD1Q96PZ7 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.38■□□□□ 0.85
CSMD1Q96PZ7 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.38■□□□□ 0.85
CSMD1Q96PZ7 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CSMD1Q96PZ7 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSMD1Q96PZ7 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.38■□□□□ 0.85
CSMD1Q96PZ7 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CSMD1Q96PZ7 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CSMD1Q96PZ7 AP004833.2-201ENST00000532228 1454 ntBASIC20.37■□□□□ 0.85
CSMD1Q96PZ7 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CSMD1Q96PZ7 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.37■□□□□ 0.85
CSMD1Q96PZ7 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.37■□□□□ 0.85
CSMD1Q96PZ7 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CSMD1Q96PZ7 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CSMD1Q96PZ7 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.36■□□□□ 0.85
CSMD1Q96PZ7 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CSMD1Q96PZ7 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.36■□□□□ 0.85
CSMD1Q96PZ7 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CSMD1Q96PZ7 AC022517.1-201ENST00000592429 346 ntBASIC20.36■□□□□ 0.85
CSMD1Q96PZ7 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CSMD1Q96PZ7 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.35■□□□□ 0.85
CSMD1Q96PZ7 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CSMD1Q96PZ7 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CSMD1Q96PZ7 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CSMD1Q96PZ7 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CSMD1Q96PZ7 AP001330.3-201ENST00000520123 633 ntBASIC20.35■□□□□ 0.85
CSMD1Q96PZ7 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.35■□□□□ 0.85
CSMD1Q96PZ7 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.35■□□□□ 0.85
CSMD1Q96PZ7 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.34■□□□□ 0.85
CSMD1Q96PZ7 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.34■□□□□ 0.85
CSMD1Q96PZ7 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CSMD1Q96PZ7 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.34■□□□□ 0.85
CSMD1Q96PZ7 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.34■□□□□ 0.85
CSMD1Q96PZ7 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.34■□□□□ 0.85
CSMD1Q96PZ7 AF213884.3-201ENST00000563833 479 ntBASIC20.34■□□□□ 0.85
CSMD1Q96PZ7 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CSMD1Q96PZ7 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
CSMD1Q96PZ7 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
CSMD1Q96PZ7 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.34■□□□□ 0.85
CSMD1Q96PZ7 AC091305.1-201ENST00000479476 895 ntBASIC20.33■□□□□ 0.85
CSMD1Q96PZ7 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.33■□□□□ 0.85
CSMD1Q96PZ7 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.33■□□□□ 0.84
CSMD1Q96PZ7 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CSMD1Q96PZ7 RASA4CP-201ENST00000424092 1398 ntBASIC20.32■□□□□ 0.84
CSMD1Q96PZ7 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CSMD1Q96PZ7 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.32■□□□□ 0.84
CSMD1Q96PZ7 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.32■□□□□ 0.84
CSMD1Q96PZ7 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CSMD1Q96PZ7 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CSMD1Q96PZ7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.31■□□□□ 0.84
CSMD1Q96PZ7 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CSMD1Q96PZ7 AL136162.1-201ENST00000607711 1078 ntBASIC20.31■□□□□ 0.84
CSMD1Q96PZ7 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.31■□□□□ 0.84
CSMD1Q96PZ7 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.31■□□□□ 0.84
CSMD1Q96PZ7 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSMD1Q96PZ7 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSMD1Q96PZ7 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSMD1Q96PZ7 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSMD1Q96PZ7 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSMD1Q96PZ7 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSMD1Q96PZ7 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSMD1Q96PZ7 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSMD1Q96PZ7 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.3■□□□□ 0.84
CSMD1Q96PZ7 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSMD1Q96PZ7 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSMD1Q96PZ7 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSMD1Q96PZ7 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.3■□□□□ 0.84
CSMD1Q96PZ7 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CSMD1Q96PZ7 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.29■□□□□ 0.84
CSMD1Q96PZ7 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CSMD1Q96PZ7 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CSMD1Q96PZ7 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CSMD1Q96PZ7 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CSMD1Q96PZ7 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CSMD1Q96PZ7 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.29■□□□□ 0.84
CSMD1Q96PZ7 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CSMD1Q96PZ7 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSMD1Q96PZ7 AF131216.4-201ENST00000638924 1588 ntBASIC20.28■□□□□ 0.84
CSMD1Q96PZ7 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CSMD1Q96PZ7 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.28■□□□□ 0.84
CSMD1Q96PZ7 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.27■□□□□ 0.84
CSMD1Q96PZ7 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CSMD1Q96PZ7 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.27■□□□□ 0.84
CSMD1Q96PZ7 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CSMD1Q96PZ7 AC011551.1-201ENST00000614101 683 ntBASIC20.26■□□□□ 0.83
CSMD1Q96PZ7 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSMD1Q96PZ7 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CSMD1Q96PZ7 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSMD1Q96PZ7 HLA-L-209ENST00000420110 1011 ntBASIC20.26■□□□□ 0.83
CSMD1Q96PZ7 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSMD1Q96PZ7 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CSMD1Q96PZ7 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CSMD1Q96PZ7 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CSMD1Q96PZ7 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.26■□□□□ 0.83
CSMD1Q96PZ7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CSMD1Q96PZ7 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSMD1Q96PZ7 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms