Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV40A0A0B4J280 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV40A0A0B4J280 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.26■□□□□ 0.67
TRAV40A0A0B4J280 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV40A0A0B4J280 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV40A0A0B4J280 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV40A0A0B4J280 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV40A0A0B4J280 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.26■□□□□ 0.67
TRAV40A0A0B4J280 AC137630.3-201ENST00000607245 391 ntBASIC19.26■□□□□ 0.67
TRAV40A0A0B4J280 AC011551.1-201ENST00000614101 683 ntBASIC19.26■□□□□ 0.67
TRAV40A0A0B4J280 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV40A0A0B4J280 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.26■□□□□ 0.67
TRAV40A0A0B4J280 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 AC096887.2-201ENST00000623443 1957 ntBASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 TSPY9P-201ENST00000440215 945 ntBASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 TSPY11P-201ENST00000442607 1045 ntBASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 FOXO3B-201ENST00000395675 1928 ntBASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.25■□□□□ 0.67
TRAV40A0A0B4J280 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV40A0A0B4J280 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TRAV40A0A0B4J280 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.24■□□□□ 0.67
TRAV40A0A0B4J280 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC19.24■□□□□ 0.67
TRAV40A0A0B4J280 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV40A0A0B4J280 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.24■□□□□ 0.67
TRAV40A0A0B4J280 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC19.24■□□□□ 0.67
TRAV40A0A0B4J280 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV40A0A0B4J280 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV40A0A0B4J280 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.23■□□□□ 0.67
TRAV40A0A0B4J280 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV40A0A0B4J280 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC19.23■□□□□ 0.67
TRAV40A0A0B4J280 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV40A0A0B4J280 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.23■□□□□ 0.67
TRAV40A0A0B4J280 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV40A0A0B4J280 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.23■□□□□ 0.67
TRAV40A0A0B4J280 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV40A0A0B4J280 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV40A0A0B4J280 AC021242.3-201ENST00000607598 1377 ntBASIC19.22■□□□□ 0.67
TRAV40A0A0B4J280 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV40A0A0B4J280 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.22■□□□□ 0.67
TRAV40A0A0B4J280 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TRAV40A0A0B4J280 KRT16P3-201ENST00000439127 1283 ntBASIC19.22■□□□□ 0.67
TRAV40A0A0B4J280 UNC93B8-201ENST00000511903 705 ntBASIC19.22■□□□□ 0.67
TRAV40A0A0B4J280 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC19.22■□□□□ 0.67
TRAV40A0A0B4J280 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV40A0A0B4J280 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV40A0A0B4J280 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.22■□□□□ 0.67
TRAV40A0A0B4J280 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV40A0A0B4J280 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC19.21■□□□□ 0.67
TRAV40A0A0B4J280 AC010501.1-201ENST00000606270 1962 ntBASIC19.21■□□□□ 0.67
TRAV40A0A0B4J280 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV40A0A0B4J280 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV40A0A0B4J280 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.21■□□□□ 0.67
TRAV40A0A0B4J280 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
TRAV40A0A0B4J280 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV40A0A0B4J280 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV40A0A0B4J280 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV40A0A0B4J280 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
TRAV40A0A0B4J280 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
TRAV40A0A0B4J280 AC097639.1-201ENST00000565519 1891 ntBASIC19.2■□□□□ 0.66
TRAV40A0A0B4J280 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.2■□□□□ 0.66
TRAV40A0A0B4J280 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.2■□□□□ 0.66
TRAV40A0A0B4J280 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.2■□□□□ 0.66
TRAV40A0A0B4J280 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV40A0A0B4J280 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV40A0A0B4J280 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV40A0A0B4J280 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV40A0A0B4J280 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV40A0A0B4J280 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV40A0A0B4J280 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.19■□□□□ 0.66
TRAV40A0A0B4J280 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.19■□□□□ 0.66
TRAV40A0A0B4J280 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.19■□□□□ 0.66
TRAV40A0A0B4J280 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
TRAV40A0A0B4J280 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.19■□□□□ 0.66
TRAV40A0A0B4J280 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV40A0A0B4J280 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV40A0A0B4J280 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV40A0A0B4J280 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAV40A0A0B4J280 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.18■□□□□ 0.66
TRAV40A0A0B4J280 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAV40A0A0B4J280 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.18■□□□□ 0.66
TRAV40A0A0B4J280 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV40A0A0B4J280 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV40A0A0B4J280 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV40A0A0B4J280 AC092803.2-201ENST00000564287 1899 ntBASIC19.18■□□□□ 0.66
TRAV40A0A0B4J280 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV40A0A0B4J280 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRAV40A0A0B4J280 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
TRAV40A0A0B4J280 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAV40A0A0B4J280 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV40A0A0B4J280 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.17■□□□□ 0.66
TRAV40A0A0B4J280 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms