Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 F2-205ENST00000530231 1849 ntTSL 5 BASIC14.05□□□□□ -0.161e-8■□□□□ 11.3
LIN28BQ6ZN17 HECTD4-212ENST00000550724 587 ntTSL 316.42■□□□□ 0.223e-6■□□□□ 11.3
LIN28BQ6ZN17 HECTD4-201ENST00000311694 2734 ntTSL 27.87□□□□□ -1.153e-6■□□□□ 11.3
LIN28BQ6ZN17 RPL23-207ENST00000577407 615 ntTSL 2 BASIC13.63□□□□□ -0.233e-27■□□□□ 11.3
LIN28BQ6ZN17 RPL23-209ENST00000584056 549 ntTSL 211.15□□□□□ -0.623e-27■□□□□ 11.3
LIN28BQ6ZN17 RPL23-208ENST00000577760 3081 nt10.17□□□□□ -0.783e-27■□□□□ 11.3
LIN28BQ6ZN17 RPL23-211ENST00000584912 2779 ntTSL 1 (best)7.74□□□□□ -1.173e-27■□□□□ 11.3
LIN28BQ6ZN17 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.49■□□□□ 0.392e-7■□□□□ 11.3
LIN28BQ6ZN17 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.462e-7■□□□□ 11.3
LIN28BQ6ZN17 CAND1-208ENST00000545606 11251 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.143e-7■□□□□ 11.3
LIN28BQ6ZN17 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC35.18■■■■□ 3.221e-8■□□□□ 11.3
LIN28BQ6ZN17 IFNGR1-202ENST00000414770 748 ntTSL 326.03■■□□□ 1.761e-8■□□□□ 11.3
LIN28BQ6ZN17 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.551e-8■□□□□ 11.3
LIN28BQ6ZN17 AC005224.4-201ENST00000583262 1652 ntBASIC23.66■■□□□ 1.384e-6■□□□□ 11.3
LIN28BQ6ZN17 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.02■□□□□ 0.961e-8■□□□□ 11.3
LIN28BQ6ZN17 FIS1-206ENST00000473527 1005 ntTSL 1 (best)20.77■□□□□ 0.921e-8■□□□□ 11.3
LIN28BQ6ZN17 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.77■□□□□ 0.921e-8■□□□□ 11.3
LIN28BQ6ZN17 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.53■□□□□ 0.721e-8■□□□□ 11.3
LIN28BQ6ZN17 FIS1-208ENST00000480497 530 ntTSL 319.53■□□□□ 0.721e-8■□□□□ 11.3
LIN28BQ6ZN17 SLC13A3-203ENST00000372121 848 ntTSL 518.48■□□□□ 0.551e-8■□□□□ 11.3
LIN28BQ6ZN17 SLC13A3-206ENST00000420568 1256 ntTSL 518.48■□□□□ 0.551e-8■□□□□ 11.3
LIN28BQ6ZN17 FIS1-204ENST00000449367 745 ntTSL 218.41■□□□□ 0.541e-8■□□□□ 11.3
LIN28BQ6ZN17 DCTN1-225ENST00000497666 479 ntTSL 318■□□□□ 0.474e-6■□□□□ 11.3
LIN28BQ6ZN17 FAT1-208ENST00000509647 1852 ntTSL 1 (best)17.3■□□□□ 0.364e-11■□□□□ 11.3
LIN28BQ6ZN17 FIS1-202ENST00000435848 692 ntTSL 516.61■□□□□ 0.251e-8■□□□□ 11.3
LIN28BQ6ZN17 SLC13A3-209ENST00000468915 1597 ntTSL 516.18■□□□□ 0.181e-8■□□□□ 11.3
LIN28BQ6ZN17 PHF10-204ENST00000480008 4285 ntTSL 1 (best)16.12■□□□□ 0.171e-8■□□□□ 11.3
LIN28BQ6ZN17 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.171e-8■□□□□ 11.3
LIN28BQ6ZN17 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.06■□□□□ 0.161e-8■□□□□ 11.3
LIN28BQ6ZN17 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC15.91■□□□□ 0.141e-8■□□□□ 11.3
LIN28BQ6ZN17 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.074e-6■□□□□ 11.3
LIN28BQ6ZN17 ATP7B-212ENST00000634519 727 ntTSL 314.92□□□□□ -0.024e-6■□□□□ 11.3
LIN28BQ6ZN17 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.11e-8■□□□□ 11.3
LIN28BQ6ZN17 HS3ST3B1-202ENST00000466596 2808 ntTSL 214.37□□□□□ -0.114e-6■□□□□ 11.3
LIN28BQ6ZN17 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC12.5□□□□□ -0.411e-8■□□□□ 11.3
LIN28BQ6ZN17 DCTN1-223ENST00000495643 673 ntTSL 312.39□□□□□ -0.434e-6■□□□□ 11.3
LIN28BQ6ZN17 SLC13A3-211ENST00000495082 1887 ntTSL 1 (best) BASIC12.31□□□□□ -0.441e-8■□□□□ 11.3
LIN28BQ6ZN17 PSMD11-205ENST00000493026 2387 ntTSL 212.19□□□□□ -0.463e-7■□□□□ 11.3
LIN28BQ6ZN17 SLC13A3-201ENST00000279027 4017 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.521e-8■□□□□ 11.3
LIN28BQ6ZN17 EPB41L2-218ENST00000527659 2436 ntTSL 5 BASIC10.85□□□□□ -0.674e-6■□□□□ 11.3
LIN28BQ6ZN17 EPB41L2-208ENST00000524581 3090 ntTSL 1 (best) BASIC10.67□□□□□ -0.74e-6■□□□□ 11.3
LIN28BQ6ZN17 EPB41L2-215ENST00000527017 727 ntTSL 510.5□□□□□ -0.734e-6■□□□□ 11.3
LIN28BQ6ZN17 SLC13A3-210ENST00000472148 3283 ntTSL 5 BASIC9.91□□□□□ -0.821e-8■□□□□ 11.3
LIN28BQ6ZN17 AL035071.1-201ENST00000569087 2131 ntBASIC9.47□□□□□ -0.894e-6■□□□□ 11.3
LIN28BQ6ZN17 FREM1-203ENST00000380894 2481 ntTSL 1 (best) BASIC9.15□□□□□ -0.944e-6■□□□□ 11.3
LIN28BQ6ZN17 FREM1-201ENST00000380875 6126 ntTSL 1 (best)9□□□□□ -0.974e-6■□□□□ 11.3
LIN28BQ6ZN17 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.014e-6■□□□□ 11.3
LIN28BQ6ZN17 EPB41L2-221ENST00000529208 3023 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.024e-6■□□□□ 11.3
LIN28BQ6ZN17 FREM1-205ENST00000427623 1421 ntTSL 58.49□□□□□ -1.054e-6■□□□□ 11.3
LIN28BQ6ZN17 SLC13A3-202ENST00000290317 3994 ntTSL 5 BASIC7.91□□□□□ -1.141e-8■□□□□ 11.3
LIN28BQ6ZN17 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC7.78□□□□□ -1.164e-6■□□□□ 11.3
LIN28BQ6ZN17 EPB41L2-228ENST00000531410 2926 ntTSL 5 BASIC7.32□□□□□ -1.244e-6■□□□□ 11.3
LIN28BQ6ZN17 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC6.89□□□□□ -1.314e-6■□□□□ 11.3
LIN28BQ6ZN17 EPB41L2-206ENST00000452150 2994 ntTSL 1 (best)6.87□□□□□ -1.314e-6■□□□□ 11.3
LIN28BQ6ZN17 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.514e-6■□□□□ 11.3
LIN28BQ6ZN17 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.51□□□□□ -1.534e-6■□□□□ 11.3
LIN28BQ6ZN17 ATXN10-205ENST00000451241 514 ntTSL 35.12□□□□□ -1.595e-7■□□□□ 11.3
LIN28BQ6ZN17 ATXN10-210ENST00000493643 617 ntTSL 54.98□□□□□ -1.615e-7■□□□□ 11.3
LIN28BQ6ZN17 FREM1-208ENST00000486223 815 ntTSL 33.43□□□□□ -1.864e-6■□□□□ 11.3
LIN28BQ6ZN17 TMED2-202ENST00000438031 603 ntTSL 430.28■■■□□ 2.448e-10■□□□□ 11.3
LIN28BQ6ZN17 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.418e-10■□□□□ 11.3
LIN28BQ6ZN17 TMED2-204ENST00000543425 1350 ntTSL 314.7□□□□□ -0.068e-10■□□□□ 11.3
LIN28BQ6ZN17 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC6.61□□□□□ -1.358e-10■□□□□ 11.3
LIN28BQ6ZN17 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.081e-9■□□□□ 11.3
LIN28BQ6ZN17 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC14.6□□□□□ -0.072e-7■□□□□ 11.3
LIN28BQ6ZN17 AC119674.2-202ENST00000641109 1675 ntAPPRIS ALT214.24□□□□□ -0.131e-9■□□□□ 11.3
LIN28BQ6ZN17 AC119674.2-203ENST00000642129 1675 ntAPPRIS P5 BASIC13.42□□□□□ -0.261e-9■□□□□ 11.3
LIN28BQ6ZN17 TGFBI-204ENST00000504411 1033 ntTSL 29.69□□□□□ -0.862e-7■□□□□ 11.3
LIN28BQ6ZN17 TGFBI-202ENST00000503087 399 ntTSL 34.86□□□□□ -1.632e-7■□□□□ 11.3
LIN28BQ6ZN17 AC119674.2-201ENST00000641494 879 ntAPPRIS ALT24.44□□□□□ -1.71e-9■□□□□ 11.3
LIN28BQ6ZN17 CFL1-205ENST00000526975 567 ntTSL 321.36■■□□□ 1.012e-9■□□□□ 11.3
LIN28BQ6ZN17 CFL1-215ENST00000534784 737 ntTSL 320.82■□□□□ 0.922e-9■□□□□ 11.3
LIN28BQ6ZN17 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.193e-11■□□□□ 11.3
LIN28BQ6ZN17 KARS-204ENST00000564578 1942 ntTSL 513.71□□□□□ -0.211e-8■□□□□ 11.3
LIN28BQ6ZN17 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC12.49□□□□□ -0.411e-8■□□□□ 11.3
LIN28BQ6ZN17 KARS-209ENST00000568378 459 ntTSL 5 BASIC11.46□□□□□ -0.571e-8■□□□□ 11.3
LIN28BQ6ZN17 KARS-202ENST00000319410 2421 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.721e-8■□□□□ 11.3
LIN28BQ6ZN17 AARS-204ENST00000566969 610 ntTSL 210.5□□□□□ -0.732e-11■□□□□ 11.3
LIN28BQ6ZN17 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.034e-6■□□□□ 11.3
LIN28BQ6ZN17 RBBP4-201ENST00000373485 1417 ntAPPRIS ALT1 TSL 1 (best) BASIC10.16□□□□□ -0.784e-6■□□□□ 11.3
LIN28BQ6ZN17 RBBP4-206ENST00000458695 1674 ntTSL 2 BASIC8.77□□□□□ -1.014e-6■□□□□ 11.3
LIN28BQ6ZN17 RBBP4-214ENST00000492348 1547 ntTSL 27.28□□□□□ -1.244e-6■□□□□ 11.3
LIN28BQ6ZN17 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.294e-6■□□□□ 11.3
LIN28BQ6ZN17 RBBP4-208ENST00000463378 882 ntTSL 55.26□□□□□ -1.574e-6■□□□□ 11.3
LIN28BQ6ZN17 RBBP4-212ENST00000482190 616 ntTSL 34.53□□□□□ -1.684e-6■□□□□ 11.3
LIN28BQ6ZN17 RBBP4-207ENST00000460669 783 ntTSL 53.34□□□□□ -1.874e-6■□□□□ 11.3
LIN28BQ6ZN17 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.67■□□□□ 0.264e-9■□□□□ 11.3
LIN28BQ6ZN17 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC14.95□□□□□ -0.024e-9■□□□□ 11.3
LIN28BQ6ZN17 ERP29-201ENST00000261735 1735 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.494e-9■□□□□ 11.3
LIN28BQ6ZN17 ATP2A2-211ENST00000552636 529 ntTSL 4 BASIC14.13□□□□□ -0.157e-7■□□□□ 11.3
LIN28BQ6ZN17 COPG1-207ENST00000513410 545 ntTSL 214.46□□□□□ -0.094e-11■□□□□ 11.2
LIN28BQ6ZN17 EEF1D-217ENST00000526786 1246 ntTSL 225.92■■□□□ 1.743e-7■□□□□ 11.2
LIN28BQ6ZN17 EEF1D-235ENST00000530848 688 ntTSL 322.01■■□□□ 1.113e-7■□□□□ 11.2
LIN28BQ6ZN17 EEF1D-230ENST00000530191 853 ntTSL 317.32■□□□□ 0.363e-7■□□□□ 11.2
LIN28BQ6ZN17 EEF1D-247ENST00000533204 842 ntTSL 215.61■□□□□ 0.093e-7■□□□□ 11.2
LIN28BQ6ZN17 EEF1D-234ENST00000530616 749 ntTSL 315.39■□□□□ 0.053e-7■□□□□ 11.2
LIN28BQ6ZN17 EEF1D-236ENST00000531218 787 ntTSL 315.39■□□□□ 0.053e-7■□□□□ 11.2
LIN28BQ6ZN17 LCP1-206ENST00000469227 730 ntTSL 315.55■□□□□ 0.083e-7■□□□□ 11.2
LIN28BQ6ZN17 LCP1-207ENST00000494531 537 ntTSL 39.4□□□□□ -0.93e-7■□□□□ 11.2
LIN28BQ6ZN17 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.373e-7■□□□□ 11.2
Retrieved 100 of 21,972 protein–RNA pairs in 336 ms