Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 HYI-210ENST00000486909 905 ntTSL 5 BASIC26.37■■□□□ 1.81
CCDC113Q9H0I3 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC26.37■■□□□ 1.81
CCDC113Q9H0I3 AC074183.2-201ENST00000623112 922 ntBASIC26.37■■□□□ 1.81
CCDC113Q9H0I3 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC113Q9H0I3 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC113Q9H0I3 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC113Q9H0I3 BEX3-202ENST00000372634 753 ntTSL 2 BASIC26.36■■□□□ 1.81
CCDC113Q9H0I3 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC113Q9H0I3 BHLHE23-202ENST00000612929 1109 ntBASIC26.36■■□□□ 1.81
CCDC113Q9H0I3 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC113Q9H0I3 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC113Q9H0I3 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC26.36■■□□□ 1.81
CCDC113Q9H0I3 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
CCDC113Q9H0I3 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC26.35■■□□□ 1.81
CCDC113Q9H0I3 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.35■■□□□ 1.81
CCDC113Q9H0I3 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
CCDC113Q9H0I3 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CCDC113Q9H0I3 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
CCDC113Q9H0I3 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.34■■□□□ 1.81
CCDC113Q9H0I3 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.34■■□□□ 1.81
CCDC113Q9H0I3 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC113Q9H0I3 KRT18P10-201ENST00000388836 1287 ntBASIC26.34■■□□□ 1.81
CCDC113Q9H0I3 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
CCDC113Q9H0I3 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC113Q9H0I3 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC113Q9H0I3 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC113Q9H0I3 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC113Q9H0I3 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.33■■□□□ 1.81
CCDC113Q9H0I3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC113Q9H0I3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC113Q9H0I3 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC113Q9H0I3 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC113Q9H0I3 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
CCDC113Q9H0I3 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC113Q9H0I3 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC26.32■■□□□ 1.8
CCDC113Q9H0I3 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC113Q9H0I3 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC113Q9H0I3 ERN1-208ENST00000606895 2068 ntBASIC26.31■■□□□ 1.8
CCDC113Q9H0I3 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC113Q9H0I3 IDNK-201ENST00000376417 511 ntTSL 5 BASIC26.31■■□□□ 1.8
CCDC113Q9H0I3 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC113Q9H0I3 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
CCDC113Q9H0I3 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC113Q9H0I3 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC113Q9H0I3 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.31■■□□□ 1.8
CCDC113Q9H0I3 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC113Q9H0I3 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC26.31■■□□□ 1.8
CCDC113Q9H0I3 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC26.31■■□□□ 1.8
CCDC113Q9H0I3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC113Q9H0I3 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC113Q9H0I3 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
CCDC113Q9H0I3 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC113Q9H0I3 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC26.3■■□□□ 1.8
CCDC113Q9H0I3 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
CCDC113Q9H0I3 LONRF2P2-201ENST00000439212 571 ntBASIC26.3■■□□□ 1.8
CCDC113Q9H0I3 RARRES2P1-201ENST00000474487 481 ntBASIC26.3■■□□□ 1.8
CCDC113Q9H0I3 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC113Q9H0I3 AC019171.1-201ENST00000601251 1056 ntBASIC26.29■■□□□ 1.8
CCDC113Q9H0I3 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC26.29■■□□□ 1.8
CCDC113Q9H0I3 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC113Q9H0I3 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC113Q9H0I3 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
CCDC113Q9H0I3 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC26.28■■□□□ 1.8
CCDC113Q9H0I3 MTX2-204ENST00000443241 799 ntTSL 3 BASIC26.28■■□□□ 1.8
CCDC113Q9H0I3 AC103834.1-201ENST00000520383 144 ntBASIC26.28■■□□□ 1.8
CCDC113Q9H0I3 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC113Q9H0I3 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC113Q9H0I3 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC113Q9H0I3 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.27■■□□□ 1.8
CCDC113Q9H0I3 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC26.27■■□□□ 1.8
CCDC113Q9H0I3 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC26.27■■□□□ 1.8
CCDC113Q9H0I3 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC26.27■■□□□ 1.8
CCDC113Q9H0I3 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC113Q9H0I3 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC113Q9H0I3 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC113Q9H0I3 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC113Q9H0I3 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
CCDC113Q9H0I3 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC113Q9H0I3 AC096887.2-201ENST00000623443 1957 ntBASIC26.26■■□□□ 1.79
CCDC113Q9H0I3 AC092803.2-201ENST00000564287 1899 ntBASIC26.26■■□□□ 1.79
CCDC113Q9H0I3 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC26.26■■□□□ 1.79
CCDC113Q9H0I3 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC26.25■■□□□ 1.79
CCDC113Q9H0I3 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC26.25■■□□□ 1.79
CCDC113Q9H0I3 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC26.25■■□□□ 1.79
CCDC113Q9H0I3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.25■■□□□ 1.79
CCDC113Q9H0I3 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.25■■□□□ 1.79
CCDC113Q9H0I3 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC113Q9H0I3 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC113Q9H0I3 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
CCDC113Q9H0I3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC113Q9H0I3 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
CCDC113Q9H0I3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC113Q9H0I3 AC010501.1-201ENST00000606270 1962 ntBASIC26.24■■□□□ 1.79
CCDC113Q9H0I3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.24■■□□□ 1.79
CCDC113Q9H0I3 AC135731.1-201ENST00000569415 2548 ntBASIC26.23■■□□□ 1.79
CCDC113Q9H0I3 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC26.23■■□□□ 1.79
CCDC113Q9H0I3 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC26.23■■□□□ 1.79
CCDC113Q9H0I3 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC26.23■■□□□ 1.79
CCDC113Q9H0I3 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC113Q9H0I3 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms