Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 SLC43A3-202ENST00000395123 2619 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.531e-6■■■■■ 27
SMNDC1O75940 SLC43A3-201ENST00000352187 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.561e-6■■■■■ 27
SMNDC1O75940 SLC43A3-218ENST00000530232 389 ntTSL 39.63□□□□□ -0.871e-6■■■■■ 27
SMNDC1O75940 SLC43A3-206ENST00000525474 801 ntTSL 59.08□□□□□ -0.961e-6■■■■■ 27
SMNDC1O75940 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.222e-6■■■■■ 27
SMNDC1O75940 CSNK1G2-209ENST00000591752 648 ntTSL 515.33■□□□□ 0.042e-6■■■■■ 27
SMNDC1O75940 SNORA71C-201ENST00000364642 134 ntBASIC8.94□□□□□ -0.981e-39■■■■■ 26.9
SMNDC1O75940 RPL3-212ENST00000467105 1396 ntTSL 1 (best)12.8□□□□□ -0.364e-48■■■■■ 26.9
SMNDC1O75940 PVRIG2P-201ENST00000435460 978 ntBASIC16.31■□□□□ 0.21e-18■■■■■ 26.9
SMNDC1O75940 RPS5-206ENST00000598807 970 ntTSL 215.3■□□□□ 0.041e-8■■■■■ 26.9
SMNDC1O75940 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.051e-8■■■■■ 26.9
SMNDC1O75940 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.151e-8■■■■■ 26.9
SMNDC1O75940 RPS5-203ENST00000596314 718 ntTSL 513.68□□□□□ -0.221e-8■■■■■ 26.9
SMNDC1O75940 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.321e-8■■■■■ 26.9
SMNDC1O75940 RPS5-204ENST00000598098 536 ntTSL 2 BASIC11.97□□□□□ -0.491e-8■■■■■ 26.9
SMNDC1O75940 RPS5-205ENST00000598495 800 ntTSL 3 BASIC11.41□□□□□ -0.581e-8■■■■■ 26.9
SMNDC1O75940 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC24.38■■□□□ 1.491e-6■■■■■ 26.9
SMNDC1O75940 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.92■□□□□ 0.941e-6■■■■■ 26.9
SMNDC1O75940 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.511e-6■■■■■ 26.9
SMNDC1O75940 DVL1-203ENST00000472445 639 ntTSL 216.3■□□□□ 0.21e-6■■■■■ 26.9
SMNDC1O75940 WDR4-207ENST00000492742 2205 ntTSL 220.35■□□□□ 0.852e-6■■■■■ 26.8
SMNDC1O75940 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.722e-6■■■■■ 26.8
SMNDC1O75940 WDR4-205ENST00000476326 1977 ntTSL 1 (best)15.38■□□□□ 0.052e-6■■■■■ 26.8
SMNDC1O75940 FBRSL1-205ENST00000542061 3175 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.122e-6■■■■□ 26.7
SMNDC1O75940 CHD4-214ENST00000545942 1317 ntTSL 1 (best)20.49■□□□□ 0.878e-12■■■■□ 26.7
SMNDC1O75940 CHD4-213ENST00000545584 553 ntTSL 417.94■□□□□ 0.468e-12■■■■□ 26.7
SMNDC1O75940 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.188e-12■■■■□ 26.7
SMNDC1O75940 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.048e-12■■■■□ 26.7
SMNDC1O75940 CHD4-211ENST00000544484 6554 ntTSL 2 BASIC13.08□□□□□ -0.328e-12■■■■□ 26.7
SMNDC1O75940 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.733e-6■■■■□ 26.7
SMNDC1O75940 FAM76B-212ENST00000545654 2001 ntTSL 224.66■■□□□ 1.544e-7■■■■□ 26.7
SMNDC1O75940 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.423e-6■■■■□ 26.7
SMNDC1O75940 FAM76B-211ENST00000543641 1379 ntTSL 1 (best)23.83■■□□□ 1.414e-7■■■■□ 26.7
SMNDC1O75940 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.55■■□□□ 1.041e-11■■■■□ 26.7
SMNDC1O75940 FAM76B-207ENST00000538316 585 ntTSL 520.55■□□□□ 0.884e-7■■■■□ 26.7
SMNDC1O75940 SPATA20-212ENST00000505559 1590 ntTSL 220.11■□□□□ 0.813e-6■■■■□ 26.7
SMNDC1O75940 HNRNPH1-221ENST00000513230 248 ntTSL 320.04■□□□□ 0.84e-10■■■■□ 26.7
SMNDC1O75940 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.793e-6■■■■□ 26.7
SMNDC1O75940 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.734e-7■■■■□ 26.7
SMNDC1O75940 GSE1-204ENST00000411612 872 ntTSL 519.49■□□□□ 0.719e-7■■■■□ 26.7
SMNDC1O75940 SNX17-202ENST00000427123 2007 ntTSL 219.28■□□□□ 0.683e-6■■■■□ 26.7
SMNDC1O75940 COL9A3-207ENST00000467819 993 ntTSL 1 (best)19.05■□□□□ 0.643e-6■■■■□ 26.7
SMNDC1O75940 SPATA20-206ENST00000504265 877 ntTSL 218.79■□□□□ 0.63e-6■■■■□ 26.7
SMNDC1O75940 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.57■□□□□ 0.563e-6■■■■□ 26.7
SMNDC1O75940 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.29■□□□□ 0.523e-6■■■■□ 26.7
SMNDC1O75940 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.06■□□□□ 0.483e-6■■■■□ 26.7
SMNDC1O75940 COL9A3-210ENST00000472880 959 ntTSL 317.86■□□□□ 0.453e-6■■■■□ 26.7
SMNDC1O75940 COL9A3-205ENST00000466192 2194 ntTSL 217.76■□□□□ 0.433e-6■■■■□ 26.7
SMNDC1O75940 SPATA20-213ENST00000505656 975 ntTSL 517.65■□□□□ 0.423e-6■■■■□ 26.7
SMNDC1O75940 SPATA20-221ENST00000512181 1456 ntTSL 217.54■□□□□ 0.43e-6■■■■□ 26.7
SMNDC1O75940 SNX17-203ENST00000440760 1955 ntTSL 1 (best)17.5■□□□□ 0.393e-6■■■■□ 26.7
SMNDC1O75940 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.49■□□□□ 0.393e-6■■■■□ 26.7
SMNDC1O75940 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.27■□□□□ 0.361e-11■■■■□ 26.7
SMNDC1O75940 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.351e-11■■■■□ 26.7
SMNDC1O75940 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.2■□□□□ 0.343e-6■■■■□ 26.7
SMNDC1O75940 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.2■□□□□ 0.343e-6■■■■□ 26.7
SMNDC1O75940 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.33e-6■■■■□ 26.7
SMNDC1O75940 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.34e-7■■■■□ 26.7
SMNDC1O75940 FAM76B-202ENST00000398187 3823 ntTSL 1 (best)16.86■□□□□ 0.294e-7■■■■□ 26.7
SMNDC1O75940 COL9A3-203ENST00000462700 1237 ntTSL 316.86■□□□□ 0.293e-6■■■■□ 26.7
SMNDC1O75940 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.263e-6■■■■□ 26.7
SMNDC1O75940 SNX17-204ENST00000453453 1638 ntTSL 1 (best)16.34■□□□□ 0.213e-6■■■■□ 26.7
SMNDC1O75940 SNRPB-203ENST00000474384 985 ntTSL 516.12■□□□□ 0.171e-50■■■■□ 26.7
SMNDC1O75940 GAPDH-206ENST00000466525 1720 ntTSL 515.98■□□□□ 0.153e-6■■■■□ 26.7
SMNDC1O75940 EIF4A1-222ENST00000582050 576 ntTSL 515.84■□□□□ 0.133e-6■■■■□ 26.7
SMNDC1O75940 RXRA-203ENST00000484822 5215 ntTSL 215.73■□□□□ 0.113e-6■■■■□ 26.7
SMNDC1O75940 ORC6-202ENST00000563306 1190 ntTSL 215.68■□□□□ 0.13e-6■■■■□ 26.7
SMNDC1O75940 SPATA20-228ENST00000635113 1706 ntTSL 1 (best)15.61■□□□□ 0.093e-6■■■■□ 26.7
SMNDC1O75940 EIF4A1-207ENST00000578324 1577 ntTSL 515.48■□□□□ 0.073e-6■■■■□ 26.7
SMNDC1O75940 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.27■□□□□ 0.046e-7■■■■□ 26.7
SMNDC1O75940 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.033e-6■■■■□ 26.7
SMNDC1O75940 GLYR1-206ENST00000587875 630 ntTSL 215.16■□□□□ 0.023e-6■■■■□ 26.7
SMNDC1O75940 ORC6-208ENST00000570260 561 ntTSL 215.05■□□□□ -03e-6■■■■□ 26.7
SMNDC1O75940 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.98□□□□□ -0.013e-6■■■■□ 26.7
SMNDC1O75940 FAM76B-210ENST00000542135 610 ntTSL 214.96□□□□□ -0.014e-7■■■■□ 26.7
SMNDC1O75940 COL9A3-208ENST00000469802 680 ntTSL 214.65□□□□□ -0.063e-6■■■■□ 26.7
SMNDC1O75940 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.086e-7■■■■□ 26.7
SMNDC1O75940 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.083e-7■■■■□ 26.7
SMNDC1O75940 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.111e-50■■■■□ 26.7
SMNDC1O75940 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.111e-50■■■■□ 26.7
SMNDC1O75940 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.39□□□□□ -0.111e-11■■■■□ 26.7
SMNDC1O75940 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.113e-6■■■■□ 26.7
SMNDC1O75940 SPATA20-217ENST00000511347 1035 ntTSL 514.36□□□□□ -0.113e-6■■■■□ 26.7
SMNDC1O75940 MAD1L1-215ENST00000464742 449 ntTSL 514.33□□□□□ -0.129e-9■■■■□ 26.7
SMNDC1O75940 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.169e-7■■■■□ 26.7
SMNDC1O75940 POLG-213ENST00000631044 4668 ntTSL 514.03□□□□□ -0.163e-7■■■■□ 26.7
SMNDC1O75940 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.179e-7■■■■□ 26.7
SMNDC1O75940 SECISBP2-201ENST00000339901 3320 ntTSL 1 (best) BASIC13.91□□□□□ -0.183e-6■■■■□ 26.7
SMNDC1O75940 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.79□□□□□ -0.23e-6■■■■□ 26.7
SMNDC1O75940 HNRNPH1-242ENST00000522256 492 ntTSL 413.68□□□□□ -0.224e-10■■■■□ 26.7
SMNDC1O75940 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.233e-7■■■■□ 26.7
SMNDC1O75940 ORC6-203ENST00000563599 681 ntTSL 513.6□□□□□ -0.233e-6■■■■□ 26.7
SMNDC1O75940 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC13.45□□□□□ -0.269e-7■■■■□ 26.7
SMNDC1O75940 POLG-217ENST00000636774 4151 ntTSL 513.44□□□□□ -0.263e-7■■■■□ 26.7
SMNDC1O75940 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.41□□□□□ -0.263e-6■■■■□ 26.7
SMNDC1O75940 MIR6787-201ENST00000616675 61 ntBASIC13.35□□□□□ -0.273e-6■■■■□ 26.7
SMNDC1O75940 GAPDH-210ENST00000496049 390 ntTSL 213.24□□□□□ -0.293e-6■■■■□ 26.7
SMNDC1O75940 EIF4A1-228ENST00000583389 951 ntTSL 312.91□□□□□ -0.343e-6■■■■□ 26.7
SMNDC1O75940 FAM76B-208ENST00000540054 730 ntTSL 212.7□□□□□ -0.384e-7■■■■□ 26.7
SMNDC1O75940 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.393e-6■■■■□ 26.7
Retrieved 100 of 11,362 protein–RNA pairs in 232.1 ms