RNA–Protein interactions for RNA: ENST00000233575.6

SNX17-201, Transcript of sorting nexin 17, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX17, Length 2,044 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-201ENST00000233575 NISCHQ9Y2I1 1504 aa42.74■■■■■ 4.43
SNX17-201ENST00000233575 CCDC180Q9P1Z9 1646 aa37.34■■■■□ 3.57
SNX17-201ENST00000233575 ZCCHC6Q5VYS8 1495 aaKnown RBP35.86■■■■□ 3.33
SNX17-201ENST00000233575 ABCC9O60706 1549 aa35.62■■■■□ 3.29
SNX17-201ENST00000233575 DCAF8L2P0C7V8 631 aa35.44■■■■□ 3.26
SNX17-201ENST00000233575 DCAF1Q9Y4B6 1507 aa35.27■■■■□ 3.24
SNX17-201ENST00000233575 MYO15BQ96JP2 1530 aa34.92■■■■□ 3.18
SNX17-201ENST00000233575 NACADO15069 1562 aa34.82■■■■□ 3.17
SNX17-201ENST00000233575 SHROOM4Q9ULL8 1493 aa34.81■■■■□ 3.16
SNX17-201ENST00000233575 RB1CC1Q8TDY2 1594 aa34.59■■■■□ 3.13
SNX17-201ENST00000233575 SCRIBQ14160 1630 aa34.4■■■■□ 3.1
SNX17-201ENST00000233575 UNC13AQ9UPW8 1703 aa33.99■■■■□ 3.03
SNX17-201ENST00000233575 BICRAQ9NZM4 1560 aa33.64■■■□□ 2.97
SNX17-201ENST00000233575 PABPN1Q86U42 306 aaKnown RBP eCLIP33.57■■■□□ 2.96
SNX17-201ENST00000233575 SUPT5HO00267 1087 aaKnown RBP33.33■■■□□ 2.93
SNX17-201ENST00000233575 CECR2Q9BXF3 1484 aa33.3■■■□□ 2.92
SNX17-201ENST00000233575 RSF1Q96T23 1441 aaPredicted RBP33.09■■■□□ 2.89
SNX17-201ENST00000233575 MROH2BQ7Z745 1585 aa33.06■■■□□ 2.88
SNX17-201ENST00000233575 BAZ1AQ9NRL2 1556 aaPredicted RBP33■■■□□ 2.87
SNX17-201ENST00000233575 SMARCA4P51532 1647 aa32.92■■■□□ 2.86
SNX17-201ENST00000233575 WIZO95785 1651 aa32.8■■■□□ 2.84
SNX17-201ENST00000233575 EIF4G1Q04637 1599 aaKnown RBP32.62■■■□□ 2.81
SNX17-201ENST00000233575 PEG3Q9GZU2 1588 aa32.49■■■□□ 2.79
SNX17-201ENST00000233575 ATAD2BQ9ULI0 1458 aa32.43■■■□□ 2.78
SNX17-201ENST00000233575 TOP2AP11388 1531 aaKnown RBP32.38■■■□□ 2.77
SNX17-201ENST00000233575 SMARCA2P51531 1590 aa32.36■■■□□ 2.77
SNX17-201ENST00000233575 BAZ1BQ9UIG0 1483 aaKnown RBP32.23■■■□□ 2.75
SNX17-201ENST00000233575 CC2D2AQ9P2K1 1620 aa32.21■■■□□ 2.75
SNX17-201ENST00000233575 NCAPD3P42695 1498 aa32.16■■■□□ 2.74
SNX17-201ENST00000233575 HMGXB3Q12766 1538 aa32.09■■■□□ 2.73
SNX17-201ENST00000233575 CCDC88BA6NC98 1476 aa32.08■■■□□ 2.73
SNX17-201ENST00000233575 CHIC1Q5VXU3 224 aa31.75■■■□□ 2.67
SNX17-201ENST00000233575 DNAJC5BQ9UF47 199 aa31.68■■■□□ 2.66
SNX17-201ENST00000233575 CFTRP13569 1480 aa31.4■■■□□ 2.62
SNX17-201ENST00000233575 ABCC8Q09428 1581 aa31.39■■■□□ 2.62
SNX17-201ENST00000233575 CADPSQ9ULU8 1353 aa31.33■■■□□ 2.61
SNX17-201ENST00000233575 TRIM41Q8WV44 630 aa31.3■■■□□ 2.6
SNX17-201ENST00000233575 NESP48681 1621 aa31.23■■■□□ 2.59
SNX17-201ENST00000233575 PRDM2Q13029 1718 aa31.22■■■□□ 2.59
SNX17-201ENST00000233575 WRNQ14191 1432 aaPredicted RBP eCLIP31.14■■■□□ 2.57
SNX17-201ENST00000233575 LAMC3Q9Y6N6 1575 aa31.1■■■□□ 2.57
SNX17-201ENST00000233575 SYNJ1O43426 1573 aa31.07■■■□□ 2.56
SNX17-201ENST00000233575 FANCD2Q9BXW9 1451 aa31.01■■■□□ 2.55
SNX17-201ENST00000233575 CUX1P39880 1505 aa30.92■■■□□ 2.54
SNX17-201ENST00000233575 TOP2BQ02880 1626 aa30.91■■■□□ 2.54
SNX17-201ENST00000233575 BIVM-ERCC5R4GMW8 1640 aa30.88■■■□□ 2.53
SNX17-201ENST00000233575 PDS5BQ9NTI5 1447 aa30.85■■■□□ 2.53
SNX17-201ENST00000233575 KIF21AQ7Z4S6 1674 aa30.83■■■□□ 2.53
SNX17-201ENST00000233575 CEP164Q9UPV0 1460 aa30.82■■■□□ 2.52
SNX17-201ENST00000233575 FAM9AQ8IZU1 332 aaPredicted RBP30.81■■■□□ 2.52
SNX17-201ENST00000233575 SOGA1O94964 1423 aa30.73■■■□□ 2.51
SNX17-201ENST00000233575 DNMBPQ6XZF7 1577 aa30.67■■■□□ 2.5
SNX17-201ENST00000233575 URB2Q14146 1524 aaKnown RBP30.66■■■□□ 2.5
SNX17-201ENST00000233575 RUSC2Q8N2Y8 1516 aa30.66■■■□□ 2.5
SNX17-201ENST00000233575 TOPBP1Q92547 1522 aa30.65■■■□□ 2.5
SNX17-201ENST00000233575 FGD5Q6ZNL6 1462 aa30.61■■■□□ 2.49
SNX17-201ENST00000233575 LOC105371045A0A1W2PR82 267 aa30.59■■■□□ 2.49
SNX17-201ENST00000233575 ERCC6Q03468 1493 aa30.52■■■□□ 2.48
SNX17-201ENST00000233575 MRC2Q9UBG0 1479 aa30.5■■■□□ 2.47
SNX17-201ENST00000233575 POLA1P09884 1462 aaPredicted RBP30.49■■■□□ 2.47
SNX17-201ENST00000233575 EEA1Q15075 1411 aa30.48■■■□□ 2.47
SNX17-201ENST00000233575 EHMT2Q96KQ7 1210 aa30.44■■■□□ 2.46
SNX17-201ENST00000233575 RAD54L2Q9Y4B4 1467 aa30.43■■■□□ 2.46
SNX17-201ENST00000233575 CSRNP3Q8WYN3 585 aa30.4■■■□□ 2.46
SNX17-201ENST00000233575 WDR62O43379 1518 aa30.36■■■□□ 2.45
SNX17-201ENST00000233575 CUX2O14529 1486 aa30.36■■■□□ 2.45
SNX17-201ENST00000233575 THOC2Q8NI27 1593 aaKnown RBP30.36■■■□□ 2.45
SNX17-201ENST00000233575 KIF27Q86VH2 1401 aa30.34■■■□□ 2.45
SNX17-201ENST00000233575 ABCA10Q8WWZ4 1543 aa30.3■■■□□ 2.44
SNX17-201ENST00000233575 WDR97A6NE52 1622 aa30.25■■■□□ 2.43
SNX17-201ENST00000233575 TARBP1Q13395 1621 aaKnown RBP30.22■■■□□ 2.43
SNX17-201ENST00000233575 KIF21BO75037 1637 aa30.16■■■□□ 2.42
SNX17-201ENST00000233575 TDRD9Q8NDG6 1382 aaKnown RBP30.14■■■□□ 2.42
SNX17-201ENST00000233575 IGF1RP08069 1367 aa30.13■■■□□ 2.41
SNX17-201ENST00000233575 GOLGA3Q08378 1498 aa30.11■■■□□ 2.41
SNX17-201ENST00000233575 RAPGEF2Q9Y4G8 1499 aa30.1■■■□□ 2.41
SNX17-201ENST00000233575 PRXQ9BXM0 1461 aa30.1■■■□□ 2.41
SNX17-201ENST00000233575 ABCA5Q8WWZ7 1642 aa30.1■■■□□ 2.41
SNX17-201ENST00000233575 IFT140Q96RY7 1462 aa30.08■■■□□ 2.41
SNX17-201ENST00000233575 GAPVD1Q14C86 1478 aa30.03■■■□□ 2.4
SNX17-201ENST00000233575 ZNF608Q9ULD9 1512 aaPredicted RBP30.02■■■□□ 2.4
SNX17-201ENST00000233575 UBTFP17480 764 aaKnown RBP30.01■■■□□ 2.4
SNX17-201ENST00000233575 AQRO60306 1485 aaKnown RBP eCLIP29.99■■■□□ 2.393e-7■■■■■ 31
SNX17-201ENST00000233575 ERICH3Q5RHP9 1530 aa29.99■■■□□ 2.39
SNX17-201ENST00000233575 CARMIL1Q5VZK9 1371 aa29.96■■■□□ 2.39
SNX17-201ENST00000233575 TNIKQ9UKE5 1360 aa29.96■■■□□ 2.39
SNX17-201ENST00000233575 PBRM1Q86U86 1689 aa29.9■■■□□ 2.38
SNX17-201ENST00000233575 CUL7Q14999 1698 aa29.88■■■□□ 2.37
SNX17-201ENST00000233575 EIF4G3O43432 1585 aaKnown RBP29.88■■■□□ 2.37
SNX17-201ENST00000233575 CEP162Q5TB80 1403 aa29.83■■■□□ 2.37
SNX17-201ENST00000233575 GRIN2BQ13224 1484 aa29.81■■■□□ 2.36
SNX17-201ENST00000233575 ADAMTS12P58397 1594 aa29.72■■■□□ 2.35
SNX17-201ENST00000233575 SNAPC4Q5SXM2 1469 aa29.69■■■□□ 2.34
SNX17-201ENST00000233575 RANGAP1P46060 587 aaPredicted RBP29.69■■■□□ 2.34
SNX17-201ENST00000233575 FHAD1B1AJZ9 1412 aa29.68■■■□□ 2.34
SNX17-201ENST00000233575 CLIP1P30622 1438 aa29.64■■■□□ 2.34
SNX17-201ENST00000233575 MAGI1Q96QZ7 1491 aaPredicted RBP29.57■■■□□ 2.33
SNX17-201ENST00000233575 CTTNBP2Q8WZ74 1663 aa29.55■■■□□ 2.32
SNX17-201ENST00000233575 SYNJ2O15056 1496 aa29.48■■■□□ 2.31
SNX17-201ENST00000233575 GRIN2AQ12879 1464 aa29.48■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 118.2 ms