RNA–Protein interactions for RNA: ENST00000544484.5

CHD4-211, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2 BASIC

Gene CHD4, Length 6,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-211ENST00000544484 DCAF8L2P0C7V8 631 aa22.65■■□□□ 1.22
CHD4-211ENST00000544484 SUPT5HO00267 1087 aaKnown RBP21.47■■□□□ 1.03
CHD4-211ENST00000544484 NISCHQ9Y2I1 1504 aa21.43■■□□□ 1.02
CHD4-211ENST00000544484 SHROOM4Q9ULL8 1493 aa21.15■□□□□ 0.98
CHD4-211ENST00000544484 EHMT2Q96KQ7 1210 aa20.9■□□□□ 0.94
CHD4-211ENST00000544484 FAM9AQ8IZU1 332 aaPredicted RBP20.3■□□□□ 0.84
CHD4-211ENST00000544484 APLP2Q06481 763 aa20.18■□□□□ 0.82
CHD4-211ENST00000544484 TTBK1Q5TCY1 1321 aaPredicted RBP20.15■□□□□ 0.82
CHD4-211ENST00000544484 RANGAP1P46060 587 aaPredicted RBP19.95■□□□□ 0.78
CHD4-211ENST00000544484 PCGF6Q9BYE7 350 aa19.95■□□□□ 0.78
CHD4-211ENST00000544484 TRIM41Q8WV44 630 aa19.78■□□□□ 0.76
CHD4-211ENST00000544484 PELP1Q8IZL8 1130 aaKnown RBP19.77■□□□□ 0.76
CHD4-211ENST00000544484 ATP1B4Q9UN42 357 aaPredicted RBP19.68■□□□□ 0.74
CHD4-211ENST00000544484 UBTFP17480 764 aaKnown RBP19.58■□□□□ 0.72
CHD4-211ENST00000544484 CCER1Q8TC90 406 aaPredicted RBP19.55■□□□□ 0.72
CHD4-211ENST00000544484 PPARGC1BQ86YN6 1023 aaKnown RBP19.42■□□□□ 0.7
CHD4-211ENST00000544484 ZEB1P37275 1124 aaPredicted RBP19.34■□□□□ 0.69
CHD4-211ENST00000544484 CENPBP07199 599 aaPredicted RBP19.29■□□□□ 0.68
CHD4-211ENST00000544484 YTHDC1Q96MU7 727 aaKnown RBP19.16■□□□□ 0.66
CHD4-211ENST00000544484 LOC105371045A0A1W2PR82 267 aa19.07■□□□□ 0.64
CHD4-211ENST00000544484 ERICH6Q7L0X2 663 aa19.07■□□□□ 0.64
CHD4-211ENST00000544484 ITGAEP38570 1179 aa19.04■□□□□ 0.64
CHD4-211ENST00000544484 TRIM26Q12899 539 aaPredicted RBP18.99■□□□□ 0.63
CHD4-211ENST00000544484 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.96■□□□□ 0.63
CHD4-211ENST00000544484 HNRNPUL2Q1KMD3 747 aaKnown RBP18.96■□□□□ 0.63
CHD4-211ENST00000544484 CHIC1Q5VXU3 224 aa18.94■□□□□ 0.62
CHD4-211ENST00000544484 NEFLP07196 543 aa18.93■□□□□ 0.62
CHD4-211ENST00000544484 MYT1LQ9UL68 1186 aa18.87■□□□□ 0.61
CHD4-211ENST00000544484 POLR3GLQ9BT43 218 aa18.82■□□□□ 0.6
CHD4-211ENST00000544484 HRCP23327 699 aa18.77■□□□□ 0.59
CHD4-211ENST00000544484 CNGB1Q14028 1251 aaPredicted RBP18.74■□□□□ 0.59
CHD4-211ENST00000544484 PABPN1Q86U42 306 aaKnown RBP eCLIP18.72■□□□□ 0.598e-7■■□□□ 12.7
CHD4-211ENST00000544484 ABCC9O60706 1549 aa18.67■□□□□ 0.58
CHD4-211ENST00000544484 FAM50AQ14320 339 aaKnown RBP18.49■□□□□ 0.55
CHD4-211ENST00000544484 SLC4A1APQ9BWU0 796 aaKnown RBP18.43■□□□□ 0.54
CHD4-211ENST00000544484 TRIM52Q96A61 297 aa18.36■□□□□ 0.53
CHD4-211ENST00000544484 DIEXFQ68CQ4 756 aaKnown RBP18.35■□□□□ 0.53
CHD4-211ENST00000544484 NEUROD1Q13562 356 aa18.34■□□□□ 0.53
CHD4-211ENST00000544484 DAXXQ9UER7 740 aaPredicted RBP18.33■□□□□ 0.53
CHD4-211ENST00000544484 FBLN2P98095 1184 aa18.28■□□□□ 0.52
CHD4-211ENST00000544484 ZNF326Q5BKZ1 582 aaKnown RBP18.2■□□□□ 0.5
CHD4-211ENST00000544484 P3H3Q8IVL6 736 aa18.18■□□□□ 0.5
CHD4-211ENST00000544484 ARID3CA6NKF2 412 aa18.18■□□□□ 0.5
CHD4-211ENST00000544484 CLSPNQ9HAW4 1339 aa18.09■□□□□ 0.49
CHD4-211ENST00000544484 MYT1Q01538 1121 aa18.07■□□□□ 0.48
CHD4-211ENST00000544484 BCANQ96GW7 911 aa18.05■□□□□ 0.48
CHD4-211ENST00000544484 CSRNP3Q8WYN3 585 aa18.05■□□□□ 0.48
CHD4-211ENST00000544484 ANP32CO43423 234 aa17.99■□□□□ 0.47
CHD4-211ENST00000544484 ZNF777Q9ULD5 760 aaPredicted RBP17.95■□□□□ 0.46
CHD4-211ENST00000544484 ZNF316A6NFI3 1004 aaPredicted RBP17.93■□□□□ 0.46
CHD4-211ENST00000544484 GTF3C3Q9Y5Q9 886 aa17.93■□□□□ 0.46
CHD4-211ENST00000544484 SCRIBQ14160 1630 aa17.89■□□□□ 0.45
CHD4-211ENST00000544484 RTL5Q5HYW3 569 aaPredicted RBP17.86■□□□□ 0.45
CHD4-211ENST00000544484 BCL11AQ9H165 835 aa17.83■□□□□ 0.44
CHD4-211ENST00000544484 SLC24A1O60721 1099 aa17.79■□□□□ 0.44
CHD4-211ENST00000544484 CDK11AQ9UQ88 783 aaPredicted RBP17.74■□□□□ 0.43
CHD4-211ENST00000544484 CANXP27824 592 aaKnown RBP17.71■□□□□ 0.43
CHD4-211ENST00000544484 ZBTB47Q9UFB7 747 aaPredicted RBP17.7■□□□□ 0.42
CHD4-211ENST00000544484 ZCCHC6Q5VYS8 1495 aaKnown RBP17.69■□□□□ 0.42
CHD4-211ENST00000544484 CHGAP10645 457 aaKnown RBP17.66■□□□□ 0.42
CHD4-211ENST00000544484 CHIC2Q9UKJ5 165 aa17.64■□□□□ 0.42
CHD4-211ENST00000544484 NEFMP07197 916 aa17.63■□□□□ 0.41
CHD4-211ENST00000544484 PLPPR3Q6T4P5 718 aa17.63■□□□□ 0.41
CHD4-211ENST00000544484 TONSLQ96HA7 1378 aa17.61■□□□□ 0.41
CHD4-211ENST00000544484 ACIN1Q9UKV3 1341 aaKnown RBP17.61■□□□□ 0.41
CHD4-211ENST00000544484 DDX10Q13206 875 aaKnown RBP17.58■□□□□ 0.4
CHD4-211ENST00000544484 ESF1Q9H501 851 aaKnown RBP17.57■□□□□ 0.4
CHD4-211ENST00000544484 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.56■□□□□ 0.43e-8■■■■□ 20.3
CHD4-211ENST00000544484 STAG3Q9UJ98 1225 aa17.54■□□□□ 0.4
CHD4-211ENST00000544484 SALL2Q9Y467 1007 aaPredicted RBP17.52■□□□□ 0.4
CHD4-211ENST00000544484 FAM9BQ8IZU0 186 aa17.51■□□□□ 0.39
CHD4-211ENST00000544484 NPM1P06748 294 aaKnown RBP eCLIP17.51■□□□□ 0.39
CHD4-211ENST00000544484 HNRNPUQ00839 825 aaKnown RBP eCLIP17.5■□□□□ 0.39
CHD4-211ENST00000544484 NPM2Q86SE8 214 aaKnown RBP17.48■□□□□ 0.39
CHD4-211ENST00000544484 FKBP8Q14318 412 aa17.48■□□□□ 0.39
CHD4-211ENST00000544484 DCAF1Q9Y4B6 1507 aa17.46■□□□□ 0.39
CHD4-211ENST00000544484 KDM2AQ9Y2K7 1162 aa17.45■□□□□ 0.38
CHD4-211ENST00000544484 HIRIP3Q9BW71 556 aaPredicted RBP17.44■□□□□ 0.38
CHD4-211ENST00000544484 CHMP7Q8WUX9 453 aaPredicted RBP17.43■□□□□ 0.38
CHD4-211ENST00000544484 MTUS2Q5JR59 1369 aa17.42■□□□□ 0.38
CHD4-211ENST00000544484 TSPY4P0CV99 314 aa17.4■□□□□ 0.38
CHD4-211ENST00000544484 TSPY10P0CW01 314 aa17.4■□□□□ 0.38
CHD4-211ENST00000544484 ANP32AP39687 249 aaKnown RBP17.39■□□□□ 0.38
CHD4-211ENST00000544484 SENP3Q9H4L4 574 aaPredicted RBP17.38■□□□□ 0.37
CHD4-211ENST00000544484 CLIP1P30622 1438 aa17.37■□□□□ 0.37
CHD4-211ENST00000544484 RRP7BPQ9NSQ0 103 aa17.36■□□□□ 0.37
CHD4-211ENST00000544484 TMC1Q8TDI8 760 aa17.35■□□□□ 0.37
CHD4-211ENST00000544484 CCDC180Q9P1Z9 1646 aa17.31■□□□□ 0.36
CHD4-211ENST00000544484 KCNH8Q96L42 1107 aa17.31■□□□□ 0.36
CHD4-211ENST00000544484 MRS2Q9HD23 443 aa17.29■□□□□ 0.36
CHD4-211ENST00000544484 RSF1Q96T23 1441 aaPredicted RBP17.29■□□□□ 0.36
CHD4-211ENST00000544484 MYO15BQ96JP2 1530 aa17.28■□□□□ 0.36
CHD4-211ENST00000544484 MIER1Q8N108 512 aa17.27■□□□□ 0.36
CHD4-211ENST00000544484 IRX6P78412 446 aaPredicted RBP17.24■□□□□ 0.35
CHD4-211ENST00000544484 WDR43Q15061 677 aaKnown RBP eCLIP17.24■□□□□ 0.351e-6■■□□□ 12.6
CHD4-211ENST00000544484 RB1CC1Q8TDY2 1594 aa17.23■□□□□ 0.35
CHD4-211ENST00000544484 CCDC136Q96JN2 1154 aa17.22■□□□□ 0.35
CHD4-211ENST00000544484 CEP162Q5TB80 1403 aa17.21■□□□□ 0.35
CHD4-211ENST00000544484 HSP90AA1P07900 732 aaKnown RBP17.21■□□□□ 0.35
CHD4-211ENST00000544484 RGL3Q3MIN7 710 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms