RNA–Protein interactions for RNA: ENST00000427123.5

SNX17-202, Transcript of sorting nexin 17, humanhuman

TSL 2

Gene SNX17, Length 2,007 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-202ENST00000427123 NISCHQ9Y2I1 1504 aa41.43■■■■■ 4.22
SNX17-202ENST00000427123 CCDC180Q9P1Z9 1646 aa35.71■■■■□ 3.31
SNX17-202ENST00000427123 ZCCHC6Q5VYS8 1495 aaKnown RBP35.01■■■■□ 3.19
SNX17-202ENST00000427123 SHROOM4Q9ULL8 1493 aa34.53■■■■□ 3.12
SNX17-202ENST00000427123 DCAF1Q9Y4B6 1507 aa34.22■■■■□ 3.07
SNX17-202ENST00000427123 DCAF8L2P0C7V8 631 aa33.94■■■■□ 3.02
SNX17-202ENST00000427123 SUPT5HO00267 1087 aaKnown RBP33.63■■■□□ 2.97
SNX17-202ENST00000427123 MYO15BQ96JP2 1530 aa33.44■■■□□ 2.94
SNX17-202ENST00000427123 SCRIBQ14160 1630 aa33.04■■■□□ 2.88
SNX17-202ENST00000427123 NACADO15069 1562 aa33.01■■■□□ 2.87
SNX17-202ENST00000427123 ABCC9O60706 1549 aa32.99■■■□□ 2.87
SNX17-202ENST00000427123 CHIC1Q5VXU3 224 aa32.64■■■□□ 2.82
SNX17-202ENST00000427123 RB1CC1Q8TDY2 1594 aa32.53■■■□□ 2.8
SNX17-202ENST00000427123 RSF1Q96T23 1441 aaPredicted RBP32.49■■■□□ 2.79
SNX17-202ENST00000427123 CECR2Q9BXF3 1484 aa32.15■■■□□ 2.74
SNX17-202ENST00000427123 MROH2BQ7Z745 1585 aa32.08■■■□□ 2.73
SNX17-202ENST00000427123 UNC13AQ9UPW8 1703 aa32.01■■■□□ 2.72
SNX17-202ENST00000427123 BAZ1AQ9NRL2 1556 aaPredicted RBP31.92■■■□□ 2.7
SNX17-202ENST00000427123 WIZO95785 1651 aa31.9■■■□□ 2.7
SNX17-202ENST00000427123 SMARCA4P51532 1647 aa31.69■■■□□ 2.66
SNX17-202ENST00000427123 BICRAQ9NZM4 1560 aa31.57■■■□□ 2.64
SNX17-202ENST00000427123 TOP2AP11388 1531 aaKnown RBP31.55■■■□□ 2.64
SNX17-202ENST00000427123 TRIM41Q8WV44 630 aa31.51■■■□□ 2.64
SNX17-202ENST00000427123 LOC105371045A0A1W2PR82 267 aa31.46■■■□□ 2.63
SNX17-202ENST00000427123 EIF4G1Q04637 1599 aaKnown RBP31.45■■■□□ 2.62
SNX17-202ENST00000427123 SMARCA2P51531 1590 aa31.3■■■□□ 2.6
SNX17-202ENST00000427123 PABPN1Q86U42 306 aaKnown RBP eCLIP31.27■■■□□ 2.6
SNX17-202ENST00000427123 CCDC88BA6NC98 1476 aa31.23■■■□□ 2.59
SNX17-202ENST00000427123 PEG3Q9GZU2 1588 aa31.22■■■□□ 2.59
SNX17-202ENST00000427123 FAM9AQ8IZU1 332 aaPredicted RBP31.02■■■□□ 2.56
SNX17-202ENST00000427123 PCGF6Q9BYE7 350 aa31■■■□□ 2.55
SNX17-202ENST00000427123 ABCC8Q09428 1581 aa30.93■■■□□ 2.54
SNX17-202ENST00000427123 ATAD2BQ9ULI0 1458 aa30.9■■■□□ 2.54
SNX17-202ENST00000427123 HRCP23327 699 aa30.86■■■□□ 2.53
SNX17-202ENST00000427123 BAZ1BQ9UIG0 1483 aaKnown RBP30.8■■■□□ 2.52
SNX17-202ENST00000427123 TRIM26Q12899 539 aaPredicted RBP30.73■■■□□ 2.51
SNX17-202ENST00000427123 EHMT2Q96KQ7 1210 aa30.59■■■□□ 2.49
SNX17-202ENST00000427123 EEA1Q15075 1411 aa30.58■■■□□ 2.49
SNX17-202ENST00000427123 WRNQ14191 1432 aaPredicted RBP eCLIP30.56■■■□□ 2.48
SNX17-202ENST00000427123 HMGXB3Q12766 1538 aa30.52■■■□□ 2.48
SNX17-202ENST00000427123 SOGA1O94964 1423 aa30.51■■■□□ 2.47
SNX17-202ENST00000427123 SYNJ1O43426 1573 aa30.46■■■□□ 2.47
SNX17-202ENST00000427123 NCAPD3P42695 1498 aa30.44■■■□□ 2.46
SNX17-202ENST00000427123 RUSC2Q8N2Y8 1516 aa30.35■■■□□ 2.45
SNX17-202ENST00000427123 CSRNP3Q8WYN3 585 aa30.32■■■□□ 2.44
SNX17-202ENST00000427123 TNIKQ9UKE5 1360 aa30.3■■■□□ 2.44
SNX17-202ENST00000427123 GOLGA3Q08378 1498 aa30.25■■■□□ 2.43
SNX17-202ENST00000427123 CEP162Q5TB80 1403 aa30.25■■■□□ 2.43
SNX17-202ENST00000427123 TOP2BQ02880 1626 aa30.23■■■□□ 2.43
SNX17-202ENST00000427123 KIF21BO75037 1637 aa30.2■■■□□ 2.42
SNX17-202ENST00000427123 BIVM-ERCC5R4GMW8 1640 aa30.19■■■□□ 2.42
SNX17-202ENST00000427123 CEP164Q9UPV0 1460 aa30.14■■■□□ 2.42
SNX17-202ENST00000427123 CFTRP13569 1480 aa30.05■■■□□ 2.4
SNX17-202ENST00000427123 PRDM2Q13029 1718 aa30.04■■■□□ 2.4
SNX17-202ENST00000427123 UBTFP17480 764 aaKnown RBP30.04■■■□□ 2.4
SNX17-202ENST00000427123 PPARGC1BQ86YN6 1023 aaKnown RBP30.04■■■□□ 2.4
SNX17-202ENST00000427123 ZEB1P37275 1124 aaPredicted RBP29.97■■■□□ 2.39
SNX17-202ENST00000427123 CUX1P39880 1505 aa29.94■■■□□ 2.38
SNX17-202ENST00000427123 CC2D2AQ9P2K1 1620 aa29.87■■■□□ 2.37
SNX17-202ENST00000427123 RAPGEF2Q9Y4G8 1499 aa29.85■■■□□ 2.37
SNX17-202ENST00000427123 ERICH3Q5RHP9 1530 aa29.81■■■□□ 2.36
SNX17-202ENST00000427123 CLIP1P30622 1438 aa29.79■■■□□ 2.36
SNX17-202ENST00000427123 CADPSQ9ULU8 1353 aa29.74■■■□□ 2.35
SNX17-202ENST00000427123 PRXQ9BXM0 1461 aa29.73■■■□□ 2.35
SNX17-202ENST00000427123 KIF27Q86VH2 1401 aa29.69■■■□□ 2.34
SNX17-202ENST00000427123 VPS8Q8N3P4 1428 aa29.66■■■□□ 2.34
SNX17-202ENST00000427123 TTBK1Q5TCY1 1321 aaPredicted RBP29.55■■■□□ 2.32
SNX17-202ENST00000427123 FGD5Q6ZNL6 1462 aa29.46■■■□□ 2.31
SNX17-202ENST00000427123 FANCD2Q9BXW9 1451 aa29.46■■■□□ 2.31
SNX17-202ENST00000427123 CUX2O14529 1486 aa29.44■■■□□ 2.3
SNX17-202ENST00000427123 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.41■■■□□ 2.3
SNX17-202ENST00000427123 ARAP1Q96P48 1450 aa29.41■■■□□ 2.3
SNX17-202ENST00000427123 CCER1Q8TC90 406 aaPredicted RBP29.4■■■□□ 2.3
SNX17-202ENST00000427123 DNMBPQ6XZF7 1577 aa29.37■■■□□ 2.29
SNX17-202ENST00000427123 APLP2Q06481 763 aa29.36■■■□□ 2.29
SNX17-202ENST00000427123 RANGAP1P46060 587 aaPredicted RBP29.33■■■□□ 2.29
SNX17-202ENST00000427123 IGF1RP08069 1367 aa29.32■■■□□ 2.28
SNX17-202ENST00000427123 LAMC3Q9Y6N6 1575 aa29.3■■■□□ 2.28
SNX17-202ENST00000427123 NESP48681 1621 aa29.26■■■□□ 2.27
SNX17-202ENST00000427123 TOPBP1Q92547 1522 aa29.25■■■□□ 2.27
SNX17-202ENST00000427123 ARHGAP35Q9NRY4 1499 aa29.22■■■□□ 2.27
SNX17-202ENST00000427123 ABCA10Q8WWZ4 1543 aa29.2■■■□□ 2.27
SNX17-202ENST00000427123 CARMIL1Q5VZK9 1371 aa29.2■■■□□ 2.26
SNX17-202ENST00000427123 POLA1P09884 1462 aaPredicted RBP29.18■■■□□ 2.26
SNX17-202ENST00000427123 RAD54L2Q9Y4B4 1467 aa29.1■■■□□ 2.25
SNX17-202ENST00000427123 WDR97A6NE52 1622 aa29.08■■■□□ 2.25
SNX17-202ENST00000427123 CUL7Q14999 1698 aa29.08■■■□□ 2.25
SNX17-202ENST00000427123 URB2Q14146 1524 aaKnown RBP29.05■■■□□ 2.24
SNX17-202ENST00000427123 HNRNPUL2Q1KMD3 747 aaKnown RBP29.02■■■□□ 2.24
SNX17-202ENST00000427123 PDS5BQ9NTI5 1447 aa29.01■■■□□ 2.24
SNX17-202ENST00000427123 MAP3K1Q13233 1512 aa28.96■■■□□ 2.23
SNX17-202ENST00000427123 KANK4Q5T7N3 995 aaPredicted RBP28.96■■■□□ 2.23
SNX17-202ENST00000427123 KIF21AQ7Z4S6 1674 aa28.95■■■□□ 2.22
SNX17-202ENST00000427123 ABCA5Q8WWZ7 1642 aa28.93■■■□□ 2.22
SNX17-202ENST00000427123 CTTNBP2Q8WZ74 1663 aa28.93■■■□□ 2.22
SNX17-202ENST00000427123 RRBP1Q9P2E9 1410 aaKnown RBP28.92■■■□□ 2.22
SNX17-202ENST00000427123 TIAM1Q13009 1591 aa28.91■■■□□ 2.22
SNX17-202ENST00000427123 EFCAB5A4FU69 1503 aa28.88■■■□□ 2.21
SNX17-202ENST00000427123 FHAD1B1AJZ9 1412 aa28.87■■■□□ 2.21
SNX17-202ENST00000427123 CFAP43Q8NDM7 1665 aa28.83■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms