RNA–Protein interactions for RNA: ENST00000438552.6

SNRPB-202, Transcript of small nuclear ribonucleoprotein polypeptides B and B1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SNRPB, Length 1,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPB-202ENST00000438552 NISCHQ9Y2I1 1504 aa38.99■■■■□ 3.83
SNRPB-202ENST00000438552 CCDC180Q9P1Z9 1646 aa34.65■■■■□ 3.14
SNRPB-202ENST00000438552 ABCC9O60706 1549 aa33.62■■■□□ 2.97
SNRPB-202ENST00000438552 ZCCHC6Q5VYS8 1495 aaKnown RBP32.57■■■□□ 2.8
SNRPB-202ENST00000438552 RB1CC1Q8TDY2 1594 aa32.45■■■□□ 2.78
SNRPB-202ENST00000438552 NACADO15069 1562 aa32.43■■■□□ 2.78
SNRPB-202ENST00000438552 DCAF8L2P0C7V8 631 aa32.38■■■□□ 2.77
SNRPB-202ENST00000438552 MYO15BQ96JP2 1530 aa32.28■■■□□ 2.76
SNRPB-202ENST00000438552 DCAF1Q9Y4B6 1507 aa32.26■■■□□ 2.75
SNRPB-202ENST00000438552 UNC13AQ9UPW8 1703 aa31.85■■■□□ 2.69
SNRPB-202ENST00000438552 SCRIBQ14160 1630 aa31.66■■■□□ 2.66
SNRPB-202ENST00000438552 BICRAQ9NZM4 1560 aa31.49■■■□□ 2.63
SNRPB-202ENST00000438552 PABPN1Q86U42 306 aaKnown RBP eCLIP31.38■■■□□ 2.61
SNRPB-202ENST00000438552 SHROOM4Q9ULL8 1493 aa31.1■■■□□ 2.57
SNRPB-202ENST00000438552 EIF4G1Q04637 1599 aaKnown RBP30.62■■■□□ 2.49
SNRPB-202ENST00000438552 DNAJC5BQ9UF47 199 aa30.54■■■□□ 2.48
SNRPB-202ENST00000438552 CC2D2AQ9P2K1 1620 aa30.44■■■□□ 2.46
SNRPB-202ENST00000438552 CECR2Q9BXF3 1484 aa30.36■■■□□ 2.45
SNRPB-202ENST00000438552 SMARCA4P51532 1647 aa30.27■■■□□ 2.44
SNRPB-202ENST00000438552 BAZ1AQ9NRL2 1556 aaPredicted RBP30.22■■■□□ 2.43
SNRPB-202ENST00000438552 MROH2BQ7Z745 1585 aa30.09■■■□□ 2.41
SNRPB-202ENST00000438552 ATAD2BQ9ULI0 1458 aa29.97■■■□□ 2.39
SNRPB-202ENST00000438552 SMARCA2P51531 1590 aa29.97■■■□□ 2.39
SNRPB-202ENST00000438552 PEG3Q9GZU2 1588 aa29.93■■■□□ 2.38
SNRPB-202ENST00000438552 NCAPD3P42695 1498 aa29.87■■■□□ 2.37
SNRPB-202ENST00000438552 HMGXB3Q12766 1538 aa29.84■■■□□ 2.37
SNRPB-202ENST00000438552 WIZO95785 1651 aa29.83■■■□□ 2.37
SNRPB-202ENST00000438552 RSF1Q96T23 1441 aaPredicted RBP29.78■■■□□ 2.36
SNRPB-202ENST00000438552 BAZ1BQ9UIG0 1483 aaKnown RBP29.76■■■□□ 2.35
SNRPB-202ENST00000438552 TOP2AP11388 1531 aaKnown RBP29.49■■■□□ 2.31
SNRPB-202ENST00000438552 NESP48681 1621 aa29.18■■■□□ 2.26
SNRPB-202ENST00000438552 SUPT5HO00267 1087 aaKnown RBP29.17■■■□□ 2.26
SNRPB-202ENST00000438552 LAMC3Q9Y6N6 1575 aa29.13■■■□□ 2.25
SNRPB-202ENST00000438552 CCDC88BA6NC98 1476 aa29.09■■■□□ 2.25
SNRPB-202ENST00000438552 CADPSQ9ULU8 1353 aa29.01■■■□□ 2.23
SNRPB-202ENST00000438552 ERCC6Q03468 1493 aa28.94■■■□□ 2.22
SNRPB-202ENST00000438552 KIF21AQ7Z4S6 1674 aa28.93■■■□□ 2.22
SNRPB-202ENST00000438552 CFTRP13569 1480 aa28.92■■■□□ 2.22
SNRPB-202ENST00000438552 PRDM2Q13029 1718 aa28.91■■■□□ 2.22
SNRPB-202ENST00000438552 PDS5BQ9NTI5 1447 aa28.84■■■□□ 2.21
SNRPB-202ENST00000438552 DNAJC5Q9H3Z4 198 aa28.82■■■□□ 2.2
SNRPB-202ENST00000438552 THOC2Q8NI27 1593 aaKnown RBP28.75■■■□□ 2.19
SNRPB-202ENST00000438552 FANCD2Q9BXW9 1451 aa28.74■■■□□ 2.19
SNRPB-202ENST00000438552 CEP164Q9UPV0 1460 aa28.7■■■□□ 2.18
SNRPB-202ENST00000438552 MRC2Q9UBG0 1479 aa28.6■■■□□ 2.17
SNRPB-202ENST00000438552 CUX2O14529 1486 aa28.53■■■□□ 2.16
SNRPB-202ENST00000438552 WDR62O43379 1518 aa28.52■■■□□ 2.16
SNRPB-202ENST00000438552 URB2Q14146 1524 aaKnown RBP28.47■■■□□ 2.15
SNRPB-202ENST00000438552 DNMBPQ6XZF7 1577 aa28.34■■■□□ 2.13
SNRPB-202ENST00000438552 TOPBP1Q92547 1522 aa28.33■■■□□ 2.13
SNRPB-202ENST00000438552 ABCC8Q09428 1581 aa28.26■■■□□ 2.11
SNRPB-202ENST00000438552 CUX1P39880 1505 aa28.23■■■□□ 2.11
SNRPB-202ENST00000438552 POLA1P09884 1462 aaPredicted RBP28.09■■■□□ 2.09
SNRPB-202ENST00000438552 SYNJ1O43426 1573 aa28.09■■■□□ 2.09
SNRPB-202ENST00000438552 BIVM-ERCC5R4GMW8 1640 aa28.08■■■□□ 2.09
SNRPB-202ENST00000438552 WRNQ14191 1432 aaPredicted RBP eCLIP28.08■■■□□ 2.09
SNRPB-202ENST00000438552 FGD5Q6ZNL6 1462 aa28.08■■■□□ 2.09
SNRPB-202ENST00000438552 TOP2BQ02880 1626 aa28.05■■■□□ 2.08
SNRPB-202ENST00000438552 IFT140Q96RY7 1462 aa28.05■■■□□ 2.08
SNRPB-202ENST00000438552 TARBP1Q13395 1621 aaKnown RBP28.03■■■□□ 2.08
SNRPB-202ENST00000438552 RAD54L2Q9Y4B4 1467 aa27.97■■■□□ 2.07
SNRPB-202ENST00000438552 ZNF608Q9ULD9 1512 aaPredicted RBP27.95■■■□□ 2.06
SNRPB-202ENST00000438552 WDR97A6NE52 1622 aa27.93■■■□□ 2.06
SNRPB-202ENST00000438552 SOGA1O94964 1423 aa27.92■■■□□ 2.06
SNRPB-202ENST00000438552 EIF4G3O43432 1585 aaKnown RBP27.92■■■□□ 2.06
SNRPB-202ENST00000438552 ABCA10Q8WWZ4 1543 aa27.79■■■□□ 2.04
SNRPB-202ENST00000438552 AQRO60306 1485 aaKnown RBP eCLIP27.77■■■□□ 2.049e-9■■■■■ 29.1
SNRPB-202ENST00000438552 TDRD9Q8NDG6 1382 aaKnown RBP27.75■■■□□ 2.03
SNRPB-202ENST00000438552 ABCA5Q8WWZ7 1642 aa27.74■■■□□ 2.03
SNRPB-202ENST00000438552 PBRM1Q86U86 1689 aa27.72■■■□□ 2.03
SNRPB-202ENST00000438552 GAPVD1Q14C86 1478 aa27.64■■■□□ 2.01
SNRPB-202ENST00000438552 GRIN2BQ13224 1484 aa27.6■■■□□ 2.01
SNRPB-202ENST00000438552 SNAPC4Q5SXM2 1469 aa27.58■■■□□ 2.01
SNRPB-202ENST00000438552 CHD1O14646 1710 aa27.55■■■□□ 2
SNRPB-202ENST00000438552 MAGI1Q96QZ7 1491 aaPredicted RBP27.51■■■□□ 2
SNRPB-202ENST00000438552 TRIM41Q8WV44 630 aa27.5■■□□□ 1.99
SNRPB-202ENST00000438552 ERICH3Q5RHP9 1530 aa27.46■■□□□ 1.99
SNRPB-202ENST00000438552 ADAMTS12P58397 1594 aa27.46■■□□□ 1.99
SNRPB-202ENST00000438552 KIF27Q86VH2 1401 aa27.44■■□□□ 1.98
SNRPB-202ENST00000438552 SYNJ2O15056 1496 aa27.4■■□□□ 1.98
SNRPB-202ENST00000438552 FBLN2P98095 1184 aa27.35■■□□□ 1.97
SNRPB-202ENST00000438552 CHIC1Q5VXU3 224 aa27.34■■□□□ 1.97
SNRPB-202ENST00000438552 RUSC2Q8N2Y8 1516 aa27.33■■□□□ 1.97
SNRPB-202ENST00000438552 CUL7Q14999 1698 aa27.33■■□□□ 1.97
SNRPB-202ENST00000438552 FHAD1B1AJZ9 1412 aa27.32■■□□□ 1.96
SNRPB-202ENST00000438552 OSCARQ8IYS5 282 aa27.28■■□□□ 1.96
SNRPB-202ENST00000438552 CHMP7Q8WUX9 453 aaPredicted RBP27.28■■□□□ 1.96
SNRPB-202ENST00000438552 GRIN2AQ12879 1464 aa27.27■■□□□ 1.96
SNRPB-202ENST00000438552 IGF1RP08069 1367 aa27.27■■□□□ 1.96
SNRPB-202ENST00000438552 CLASP1Q7Z460 1538 aa27.19■■□□□ 1.94
SNRPB-202ENST00000438552 CEP170Q5SW79 1584 aa27.18■■□□□ 1.94
SNRPB-202ENST00000438552 CARMIL1Q5VZK9 1371 aa27.13■■□□□ 1.93
SNRPB-202ENST00000438552 NUP160Q12769 1436 aa27.12■■□□□ 1.93
SNRPB-202ENST00000438552 EEA1Q15075 1411 aa27.07■■□□□ 1.92
SNRPB-202ENST00000438552 RAPGEF2Q9Y4G8 1499 aa27.03■■□□□ 1.92
SNRPB-202ENST00000438552 RIMBP3CA6NJZ7 1639 aa27.01■■□□□ 1.91
SNRPB-202ENST00000438552 RIMBP3BA6NNM3 1639 aa27.01■■□□□ 1.91
SNRPB-202ENST00000438552 RIMBP3Q9UFD9 1639 aa27.01■■□□□ 1.91
SNRPB-202ENST00000438552 PRXQ9BXM0 1461 aa27■■□□□ 1.91
SNRPB-202ENST00000438552 ARHGEF11O15085 1522 aa26.99■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms