RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 DCAF8L2P0C7V8 631 aa25.02■■□□□ 1.6
CHD4-201ENST00000357008 SUPT5HO00267 1087 aaKnown RBP24.18■■□□□ 1.46
CHD4-201ENST00000357008 PELP1Q8IZL8 1130 aaKnown RBP23.73■■□□□ 1.39
CHD4-201ENST00000357008 NISCHQ9Y2I1 1504 aa23.7■■□□□ 1.38
CHD4-201ENST00000357008 SHROOM4Q9ULL8 1493 aa23.53■■□□□ 1.36
CHD4-201ENST00000357008 EHMT2Q96KQ7 1210 aa23.34■■□□□ 1.33
CHD4-201ENST00000357008 APLP2Q06481 763 aa23.12■■□□□ 1.29
CHD4-201ENST00000357008 PCGF6Q9BYE7 350 aa23.02■■□□□ 1.28
CHD4-201ENST00000357008 CENPBP07199 599 aaPredicted RBP22.89■■□□□ 1.25
CHD4-201ENST00000357008 ZEB1P37275 1124 aaPredicted RBP22.83■■□□□ 1.25
CHD4-201ENST00000357008 FAM9AQ8IZU1 332 aaPredicted RBP22.8■■□□□ 1.24
CHD4-201ENST00000357008 ERICH6Q7L0X2 663 aa22.69■■□□□ 1.22
CHD4-201ENST00000357008 TTBK1Q5TCY1 1321 aaPredicted RBP22.65■■□□□ 1.22
CHD4-201ENST00000357008 CCER1Q8TC90 406 aaPredicted RBP22.64■■□□□ 1.22
CHD4-201ENST00000357008 MYT1Q01538 1121 aa22.57■■□□□ 1.2
CHD4-201ENST00000357008 TRIM41Q8WV44 630 aa22.41■■□□□ 1.18
CHD4-201ENST00000357008 NEFLP07196 543 aa22.29■■□□□ 1.16
CHD4-201ENST00000357008 RANGAP1P46060 587 aaPredicted RBP22.24■■□□□ 1.15
CHD4-201ENST00000357008 YTHDC1Q96MU7 727 aaKnown RBP22.19■■□□□ 1.14
CHD4-201ENST00000357008 UBTFP17480 764 aaKnown RBP22.12■■□□□ 1.13
CHD4-201ENST00000357008 ATP1B4Q9UN42 357 aaPredicted RBP22.06■■□□□ 1.12
CHD4-201ENST00000357008 TRIM26Q12899 539 aaPredicted RBP22.03■■□□□ 1.12
CHD4-201ENST00000357008 HRCP23327 699 aa22■■□□□ 1.11
CHD4-201ENST00000357008 PPARGC1BQ86YN6 1023 aaKnown RBP21.83■■□□□ 1.09
CHD4-201ENST00000357008 DAXXQ9UER7 740 aaPredicted RBP21.63■■□□□ 1.05
CHD4-201ENST00000357008 LOC105371045A0A1W2PR82 267 aa21.52■■□□□ 1.04
CHD4-201ENST00000357008 CHIC1Q5VXU3 224 aa21.52■■□□□ 1.03
CHD4-201ENST00000357008 ITGAEP38570 1179 aa21.46■■□□□ 1.03
CHD4-201ENST00000357008 HNRNPUL2Q1KMD3 747 aaKnown RBP21.42■■□□□ 1.02
CHD4-201ENST00000357008 DIEXFQ68CQ4 756 aaKnown RBP21.38■■□□□ 1.01
CHD4-201ENST00000357008 POLR3GLQ9BT43 218 aa21.38■■□□□ 1.01
CHD4-201ENST00000357008 RTL5Q5HYW3 569 aaPredicted RBP21.28■■□□□ 1
CHD4-201ENST00000357008 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.27■■□□□ 1
CHD4-201ENST00000357008 CNGB1Q14028 1251 aaPredicted RBP21.15■□□□□ 0.98
CHD4-201ENST00000357008 ZNF316A6NFI3 1004 aaPredicted RBP21.13■□□□□ 0.97
CHD4-201ENST00000357008 MYT1LQ9UL68 1186 aa21.08■□□□□ 0.97
CHD4-201ENST00000357008 GTF3C3Q9Y5Q9 886 aa21.08■□□□□ 0.97
CHD4-201ENST00000357008 CLSPNQ9HAW4 1339 aa21.05■□□□□ 0.96
CHD4-201ENST00000357008 BCANQ96GW7 911 aa20.92■□□□□ 0.94
CHD4-201ENST00000357008 FAM50AQ14320 339 aaKnown RBP20.89■□□□□ 0.93
CHD4-201ENST00000357008 CDK11AQ9UQ88 783 aaPredicted RBP20.89■□□□□ 0.93
CHD4-201ENST00000357008 SLC4A1APQ9BWU0 796 aaKnown RBP20.86■□□□□ 0.93
CHD4-201ENST00000357008 ANP32CO43423 234 aa20.86■□□□□ 0.93
CHD4-201ENST00000357008 NEUROD1Q13562 356 aa20.83■□□□□ 0.92
CHD4-201ENST00000357008 ACIN1Q9UKV3 1341 aaKnown RBP20.8■□□□□ 0.92
CHD4-201ENST00000357008 TRIM52Q96A61 297 aa20.79■□□□□ 0.92
CHD4-201ENST00000357008 ZNF326Q5BKZ1 582 aaKnown RBP20.56■□□□□ 0.88
CHD4-201ENST00000357008 ANP32AP39687 249 aaKnown RBP20.55■□□□□ 0.88
CHD4-201ENST00000357008 ZBTB47Q9UFB7 747 aaPredicted RBP20.55■□□□□ 0.88
CHD4-201ENST00000357008 CANXP27824 592 aaKnown RBP20.46■□□□□ 0.87
CHD4-201ENST00000357008 FKBP8Q14318 412 aa20.37■□□□□ 0.85
CHD4-201ENST00000357008 CSRNP3Q8WYN3 585 aa20.36■□□□□ 0.85
CHD4-201ENST00000357008 NPM2Q86SE8 214 aaKnown RBP20.33■□□□□ 0.85
CHD4-201ENST00000357008 NEFMP07197 916 aa20.28■□□□□ 0.84
CHD4-201ENST00000357008 PABPN1Q86U42 306 aaKnown RBP eCLIP20.26■□□□□ 0.838e-7■■□□□ 12.7
CHD4-201ENST00000357008 DCAF1Q9Y4B6 1507 aa20.26■□□□□ 0.83
CHD4-201ENST00000357008 EIF5BO60841 1220 aaKnown RBP20.24■□□□□ 0.83
CHD4-201ENST00000357008 BCL11AQ9H165 835 aa20.22■□□□□ 0.83
CHD4-201ENST00000357008 HNRNPUQ00839 825 aaKnown RBP eCLIP20.21■□□□□ 0.83
CHD4-201ENST00000357008 ANP32BQ92688 251 aaKnown RBP20.2■□□□□ 0.82
CHD4-201ENST00000357008 TONSLQ96HA7 1378 aa20.18■□□□□ 0.82
CHD4-201ENST00000357008 P3H3Q8IVL6 736 aa20.17■□□□□ 0.82
CHD4-201ENST00000357008 DDX10Q13206 875 aaKnown RBP20.14■□□□□ 0.81
CHD4-201ENST00000357008 ABCC9O60706 1549 aa20.13■□□□□ 0.81
CHD4-201ENST00000357008 UPF2Q9HAU5 1272 aaKnown RBP20.13■□□□□ 0.81
CHD4-201ENST00000357008 SLC24A1O60721 1099 aa20.12■□□□□ 0.81
CHD4-201ENST00000357008 HSP90AA1P07900 732 aaKnown RBP20.09■□□□□ 0.81
CHD4-201ENST00000357008 FAM9BQ8IZU0 186 aa20.09■□□□□ 0.81
CHD4-201ENST00000357008 SCAF1Q9H7N4 1312 aaKnown RBP20.09■□□□□ 0.81
CHD4-201ENST00000357008 GLIPR1L2Q4G1C9 344 aa20.08■□□□□ 0.81
CHD4-201ENST00000357008 FBLN2P98095 1184 aa20.07■□□□□ 0.8
CHD4-201ENST00000357008 CCDC136Q96JN2 1154 aa20.06■□□□□ 0.8
CHD4-201ENST00000357008 ARID3CA6NKF2 412 aa20.03■□□□□ 0.8
CHD4-201ENST00000357008 ZNF777Q9ULD5 760 aaPredicted RBP20.03■□□□□ 0.8
CHD4-201ENST00000357008 NBR1Q14596 966 aa20.01■□□□□ 0.79
CHD4-201ENST00000357008 MIER1Q8N108 512 aa19.96■□□□□ 0.79
CHD4-201ENST00000357008 TMC1Q8TDI8 760 aa19.96■□□□□ 0.79
CHD4-201ENST00000357008 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.96■□□□□ 0.79
CHD4-201ENST00000357008 SALL2Q9Y467 1007 aaPredicted RBP19.91■□□□□ 0.78
CHD4-201ENST00000357008 MRS2Q9HD23 443 aa19.9■□□□□ 0.78
CHD4-201ENST00000357008 WDR43Q15061 677 aaKnown RBP eCLIP19.81■□□□□ 0.761e-6■■□□□ 12.6
CHD4-201ENST00000357008 IRX6P78412 446 aaPredicted RBP19.8■□□□□ 0.76
CHD4-201ENST00000357008 ARXQ96QS3 562 aa19.77■□□□□ 0.75
CHD4-201ENST00000357008 CHGAP10645 457 aaKnown RBP19.76■□□□□ 0.75
CHD4-201ENST00000357008 CHIC2Q9UKJ5 165 aa19.75■□□□□ 0.75
CHD4-201ENST00000357008 DDRGK1Q96HY6 314 aa19.75■□□□□ 0.75
CHD4-201ENST00000357008 ANP32EQ9BTT0 268 aa19.73■□□□□ 0.75
CHD4-201ENST00000357008 EIF4G2P78344 907 aaKnown RBP eCLIP19.71■□□□□ 0.75
CHD4-201ENST00000357008 BECN1Q14457 450 aa19.68■□□□□ 0.74
CHD4-201ENST00000357008 HIRIP3Q9BW71 556 aaPredicted RBP19.68■□□□□ 0.74
CHD4-201ENST00000357008 STAG3Q9UJ98 1225 aa19.66■□□□□ 0.74
CHD4-201ENST00000357008 CLIP1P30622 1438 aa19.64■□□□□ 0.74
CHD4-201ENST00000357008 ESF1Q9H501 851 aaKnown RBP19.64■□□□□ 0.73
CHD4-201ENST00000357008 KDM2AQ9Y2K7 1162 aa19.64■□□□□ 0.73
CHD4-201ENST00000357008 SCRIBQ14160 1630 aa19.64■□□□□ 0.73
CHD4-201ENST00000357008 MTUS2Q5JR59 1369 aa19.63■□□□□ 0.73
CHD4-201ENST00000357008 ZCCHC6Q5VYS8 1495 aaKnown RBP19.62■□□□□ 0.73
CHD4-201ENST00000357008 TSPY4P0CV99 314 aa19.62■□□□□ 0.73
CHD4-201ENST00000357008 TSPY10P0CW01 314 aa19.62■□□□□ 0.73
CHD4-201ENST00000357008 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.61■□□□□ 0.733e-8■■■■□ 20.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms