RNA–Protein interactions for RNA: ENST00000229239.9

GAPDH-201, Transcript of glyceraldehyde-3-phosphate dehydrogenase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GAPDH, Length 1,875 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Exosome, Mitochondria, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPDH-201ENST00000229239 NISCHQ9Y2I1 1504 aa36.62■■■■□ 3.45
GAPDH-201ENST00000229239 CCDC180Q9P1Z9 1646 aa32.71■■■□□ 2.83
GAPDH-201ENST00000229239 ABCC9O60706 1549 aa32.25■■■□□ 2.75
GAPDH-201ENST00000229239 RB1CC1Q8TDY2 1594 aa30.89■■■□□ 2.54
GAPDH-201ENST00000229239 ZCCHC6Q5VYS8 1495 aaKnown RBP30.83■■■□□ 2.53
GAPDH-201ENST00000229239 DCAF8L2P0C7V8 631 aa30.8■■■□□ 2.52
GAPDH-201ENST00000229239 NACADO15069 1562 aa30.79■■■□□ 2.52
GAPDH-201ENST00000229239 MYO15BQ96JP2 1530 aa30.54■■■□□ 2.48
GAPDH-201ENST00000229239 UNC13AQ9UPW8 1703 aa30.29■■■□□ 2.44
GAPDH-201ENST00000229239 DCAF1Q9Y4B6 1507 aa30.28■■■□□ 2.44
GAPDH-201ENST00000229239 SHROOM4Q9ULL8 1493 aa30.16■■■□□ 2.42
GAPDH-201ENST00000229239 PABPN1Q86U42 306 aaKnown RBP eCLIP30.05■■■□□ 2.4
GAPDH-201ENST00000229239 BICRAQ9NZM4 1560 aa30.04■■■□□ 2.4
GAPDH-201ENST00000229239 DNAJC5BQ9UF47 199 aa29.94■■■□□ 2.38
GAPDH-201ENST00000229239 SCRIBQ14160 1630 aa29.77■■■□□ 2.36
GAPDH-201ENST00000229239 SUPT5HO00267 1087 aaKnown RBP29.37■■■□□ 2.29
GAPDH-201ENST00000229239 EIF4G1Q04637 1599 aaKnown RBP29.23■■■□□ 2.27
GAPDH-201ENST00000229239 CC2D2AQ9P2K1 1620 aa29.2■■■□□ 2.26
GAPDH-201ENST00000229239 CECR2Q9BXF3 1484 aa29.01■■■□□ 2.24
GAPDH-201ENST00000229239 RSF1Q96T23 1441 aaPredicted RBP28.58■■■□□ 2.17
GAPDH-201ENST00000229239 CHIC1Q5VXU3 224 aa28.52■■■□□ 2.16
GAPDH-201ENST00000229239 SMARCA4P51532 1647 aa28.47■■■□□ 2.15
GAPDH-201ENST00000229239 NCAPD3P42695 1498 aa28.43■■■□□ 2.14
GAPDH-201ENST00000229239 BAZ1AQ9NRL2 1556 aaPredicted RBP28.39■■■□□ 2.14
GAPDH-201ENST00000229239 ATAD2BQ9ULI0 1458 aa28.38■■■□□ 2.13
GAPDH-201ENST00000229239 SMARCA2P51531 1590 aa28.32■■■□□ 2.12
GAPDH-201ENST00000229239 HMGXB3Q12766 1538 aa28.26■■■□□ 2.11
GAPDH-201ENST00000229239 PEG3Q9GZU2 1588 aa28.23■■■□□ 2.11
GAPDH-201ENST00000229239 MROH2BQ7Z745 1585 aa28.22■■■□□ 2.11
GAPDH-201ENST00000229239 BAZ1BQ9UIG0 1483 aaKnown RBP28.11■■■□□ 2.09
GAPDH-201ENST00000229239 WIZO95785 1651 aa27.99■■■□□ 2.07
GAPDH-201ENST00000229239 NESP48681 1621 aa27.84■■■□□ 2.05
GAPDH-201ENST00000229239 TOP2AP11388 1531 aaKnown RBP27.78■■■□□ 2.04
GAPDH-201ENST00000229239 ERCC6Q03468 1493 aa27.77■■■□□ 2.04
GAPDH-201ENST00000229239 LAMC3Q9Y6N6 1575 aa27.72■■■□□ 2.03
GAPDH-201ENST00000229239 CUX2O14529 1486 aa27.66■■■□□ 2.02
GAPDH-201ENST00000229239 TRIM41Q8WV44 630 aa27.63■■■□□ 2.01
GAPDH-201ENST00000229239 CADPSQ9ULU8 1353 aa27.57■■■□□ 2
GAPDH-201ENST00000229239 KIF21AQ7Z4S6 1674 aa27.54■■■□□ 2
GAPDH-201ENST00000229239 THOC2Q8NI27 1593 aaKnown RBP27.53■■■□□ 2
GAPDH-201ENST00000229239 PDS5BQ9NTI5 1447 aa27.5■■□□□ 1.99
GAPDH-201ENST00000229239 CCDC88BA6NC98 1476 aa27.49■■□□□ 1.99
GAPDH-201ENST00000229239 LOC105371045A0A1W2PR82 267 aa27.39■■□□□ 1.98
GAPDH-201ENST00000229239 CFTRP13569 1480 aa27.34■■□□□ 1.97
GAPDH-201ENST00000229239 MRC2Q9UBG0 1479 aa27.27■■□□□ 1.96
GAPDH-201ENST00000229239 FANCD2Q9BXW9 1451 aa27.23■■□□□ 1.95
GAPDH-201ENST00000229239 WDR62O43379 1518 aa27.22■■□□□ 1.95
GAPDH-201ENST00000229239 CEP164Q9UPV0 1460 aa27.22■■□□□ 1.95
GAPDH-201ENST00000229239 DNAJC5Q9H3Z4 198 aa27.19■■□□□ 1.94
GAPDH-201ENST00000229239 PRDM2Q13029 1718 aa27.17■■□□□ 1.94
GAPDH-201ENST00000229239 ABCC8Q09428 1581 aa27.07■■□□□ 1.92
GAPDH-201ENST00000229239 FAM9AQ8IZU1 332 aaPredicted RBP27.06■■□□□ 1.92
GAPDH-201ENST00000229239 URB2Q14146 1524 aaKnown RBP27.02■■□□□ 1.92
GAPDH-201ENST00000229239 EEA1Q15075 1411 aa26.94■■□□□ 1.9
GAPDH-201ENST00000229239 WRNQ14191 1432 aaPredicted RBP eCLIP26.9■■□□□ 1.9
GAPDH-201ENST00000229239 PCGF6Q9BYE7 350 aa26.87■■□□□ 1.89
GAPDH-201ENST00000229239 TRIM26Q12899 539 aaPredicted RBP26.79■■□□□ 1.88
GAPDH-201ENST00000229239 TOPBP1Q92547 1522 aa26.78■■□□□ 1.88
GAPDH-201ENST00000229239 SOGA1O94964 1423 aa26.73■■□□□ 1.87
GAPDH-201ENST00000229239 DNMBPQ6XZF7 1577 aa26.73■■□□□ 1.87
GAPDH-201ENST00000229239 SYNJ1O43426 1573 aa26.71■■□□□ 1.87
GAPDH-201ENST00000229239 HRCP23327 699 aa26.7■■□□□ 1.87
GAPDH-201ENST00000229239 IFT140Q96RY7 1462 aa26.67■■□□□ 1.86
GAPDH-201ENST00000229239 CSRNP3Q8WYN3 585 aa26.66■■□□□ 1.86
GAPDH-201ENST00000229239 ZNF608Q9ULD9 1512 aaPredicted RBP26.61■■□□□ 1.85
GAPDH-201ENST00000229239 TOP2BQ02880 1626 aa26.6■■□□□ 1.85
GAPDH-201ENST00000229239 TNIKQ9UKE5 1360 aa26.6■■□□□ 1.85
GAPDH-201ENST00000229239 EHMT2Q96KQ7 1210 aa26.59■■□□□ 1.85
GAPDH-201ENST00000229239 RUSC2Q8N2Y8 1516 aa26.56■■□□□ 1.84
GAPDH-201ENST00000229239 TARBP1Q13395 1621 aaKnown RBP26.55■■□□□ 1.84
GAPDH-201ENST00000229239 BIVM-ERCC5R4GMW8 1640 aa26.55■■□□□ 1.84
GAPDH-201ENST00000229239 GOLGA3Q08378 1498 aa26.54■■□□□ 1.84
GAPDH-201ENST00000229239 POLA1P09884 1462 aaPredicted RBP26.53■■□□□ 1.84
GAPDH-201ENST00000229239 KIF21BO75037 1637 aa26.5■■□□□ 1.83
GAPDH-201ENST00000229239 EIF4G3O43432 1585 aaKnown RBP26.49■■□□□ 1.83
GAPDH-201ENST00000229239 CUX1P39880 1505 aa26.48■■□□□ 1.83
GAPDH-201ENST00000229239 CEP162Q5TB80 1403 aa26.46■■□□□ 1.83
GAPDH-201ENST00000229239 FGD5Q6ZNL6 1462 aa26.43■■□□□ 1.82
GAPDH-201ENST00000229239 RAD54L2Q9Y4B4 1467 aa26.42■■□□□ 1.82
GAPDH-201ENST00000229239 OSCARQ8IYS5 282 aa26.4■■□□□ 1.82
GAPDH-201ENST00000229239 AQRO60306 1485 aaKnown RBP eCLIP26.39■■□□□ 1.822e-13■■■■■ 33.3
GAPDH-201ENST00000229239 UBTFP17480 764 aaKnown RBP26.34■■□□□ 1.81
GAPDH-201ENST00000229239 TDRD9Q8NDG6 1382 aaKnown RBP26.34■■□□□ 1.81
GAPDH-201ENST00000229239 WDR97A6NE52 1622 aa26.3■■□□□ 1.8
GAPDH-201ENST00000229239 CHD1O14646 1710 aa26.25■■□□□ 1.79
GAPDH-201ENST00000229239 ERICH3Q5RHP9 1530 aa26.21■■□□□ 1.79
GAPDH-201ENST00000229239 KIF27Q86VH2 1401 aa26.18■■□□□ 1.78
GAPDH-201ENST00000229239 RAPGEF2Q9Y4G8 1499 aa26.17■■□□□ 1.78
GAPDH-201ENST00000229239 FBLN2P98095 1184 aa26.17■■□□□ 1.78
GAPDH-201ENST00000229239 ABCA10Q8WWZ4 1543 aa26.16■■□□□ 1.78
GAPDH-201ENST00000229239 PRXQ9BXM0 1461 aa26.16■■□□□ 1.78
GAPDH-201ENST00000229239 ZEB1P37275 1124 aaPredicted RBP26.16■■□□□ 1.78
GAPDH-201ENST00000229239 SNAPC4Q5SXM2 1469 aa26.14■■□□□ 1.78
GAPDH-201ENST00000229239 GRIN2BQ13224 1484 aa26.13■■□□□ 1.77
GAPDH-201ENST00000229239 CLIP1P30622 1438 aa26.12■■□□□ 1.77
GAPDH-201ENST00000229239 GAPVD1Q14C86 1478 aa26.12■■□□□ 1.77
GAPDH-201ENST00000229239 ABCA5Q8WWZ7 1642 aa26.11■■□□□ 1.77
GAPDH-201ENST00000229239 PBRM1Q86U86 1689 aa26.1■■□□□ 1.77
GAPDH-201ENST00000229239 MAGI1Q96QZ7 1491 aaPredicted RBP26.1■■□□□ 1.77
GAPDH-201ENST00000229239 RIMBP3CA6NJZ7 1639 aa26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms