Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
TCRBV3S1A0A5B6 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
TCRBV3S1A0A5B6 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC22.44■■□□□ 1.18
TCRBV3S1A0A5B6 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.43■■□□□ 1.18
TCRBV3S1A0A5B6 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
TCRBV3S1A0A5B6 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
TCRBV3S1A0A5B6 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TCRBV3S1A0A5B6 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TCRBV3S1A0A5B6 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
TCRBV3S1A0A5B6 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
TCRBV3S1A0A5B6 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.42■■□□□ 1.18
TCRBV3S1A0A5B6 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
TCRBV3S1A0A5B6 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
TCRBV3S1A0A5B6 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.42■■□□□ 1.18
TCRBV3S1A0A5B6 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
TCRBV3S1A0A5B6 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
TCRBV3S1A0A5B6 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC22.41■■□□□ 1.18
TCRBV3S1A0A5B6 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
TCRBV3S1A0A5B6 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC22.41■■□□□ 1.18
TCRBV3S1A0A5B6 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC22.41■■□□□ 1.18
TCRBV3S1A0A5B6 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
TCRBV3S1A0A5B6 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.41■■□□□ 1.18
TCRBV3S1A0A5B6 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TCRBV3S1A0A5B6 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TCRBV3S1A0A5B6 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TCRBV3S1A0A5B6 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC22.4■■□□□ 1.18
TCRBV3S1A0A5B6 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC22.4■■□□□ 1.18
TCRBV3S1A0A5B6 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC22.4■■□□□ 1.18
TCRBV3S1A0A5B6 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC22.4■■□□□ 1.18
TCRBV3S1A0A5B6 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.4■■□□□ 1.18
TCRBV3S1A0A5B6 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
TCRBV3S1A0A5B6 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
TCRBV3S1A0A5B6 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TCRBV3S1A0A5B6 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
TCRBV3S1A0A5B6 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TCRBV3S1A0A5B6 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TCRBV3S1A0A5B6 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
TCRBV3S1A0A5B6 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
TCRBV3S1A0A5B6 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC22.39■■□□□ 1.18
TCRBV3S1A0A5B6 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
TCRBV3S1A0A5B6 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
TCRBV3S1A0A5B6 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.38■■□□□ 1.17
TCRBV3S1A0A5B6 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
TCRBV3S1A0A5B6 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TCRBV3S1A0A5B6 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
TCRBV3S1A0A5B6 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TCRBV3S1A0A5B6 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.38■■□□□ 1.17
TCRBV3S1A0A5B6 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.38■■□□□ 1.17
TCRBV3S1A0A5B6 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
TCRBV3S1A0A5B6 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC22.37■■□□□ 1.17
TCRBV3S1A0A5B6 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
TCRBV3S1A0A5B6 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
TCRBV3S1A0A5B6 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
TCRBV3S1A0A5B6 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TCRBV3S1A0A5B6 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TCRBV3S1A0A5B6 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TCRBV3S1A0A5B6 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TCRBV3S1A0A5B6 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TCRBV3S1A0A5B6 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TCRBV3S1A0A5B6 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TCRBV3S1A0A5B6 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TCRBV3S1A0A5B6 MIR3665-201ENST00000578708 105 ntBASIC22.35■■□□□ 1.17
TCRBV3S1A0A5B6 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TCRBV3S1A0A5B6 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC22.35■■□□□ 1.17
TCRBV3S1A0A5B6 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TCRBV3S1A0A5B6 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC22.35■■□□□ 1.17
TCRBV3S1A0A5B6 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
TCRBV3S1A0A5B6 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.34■■□□□ 1.17
TCRBV3S1A0A5B6 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.34■■□□□ 1.17
TCRBV3S1A0A5B6 AC004812.2-201ENST00000611079 2094 ntBASIC22.34■■□□□ 1.17
TCRBV3S1A0A5B6 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
TCRBV3S1A0A5B6 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
TCRBV3S1A0A5B6 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
TCRBV3S1A0A5B6 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TCRBV3S1A0A5B6 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
TCRBV3S1A0A5B6 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
TCRBV3S1A0A5B6 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.33■■□□□ 1.16
TCRBV3S1A0A5B6 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TCRBV3S1A0A5B6 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC22.32■■□□□ 1.16
TCRBV3S1A0A5B6 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TCRBV3S1A0A5B6 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
TCRBV3S1A0A5B6 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TCRBV3S1A0A5B6 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TCRBV3S1A0A5B6 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC22.31■■□□□ 1.16
TCRBV3S1A0A5B6 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TCRBV3S1A0A5B6 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TCRBV3S1A0A5B6 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TCRBV3S1A0A5B6 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TCRBV3S1A0A5B6 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TCRBV3S1A0A5B6 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
TCRBV3S1A0A5B6 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.3■■□□□ 1.16
TCRBV3S1A0A5B6 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC22.3■■□□□ 1.16
TCRBV3S1A0A5B6 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TCRBV3S1A0A5B6 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TCRBV3S1A0A5B6 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TCRBV3S1A0A5B6 AL359504.2-201ENST00000605506 1601 ntBASIC22.3■■□□□ 1.16
TCRBV3S1A0A5B6 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TCRBV3S1A0A5B6 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
TCRBV3S1A0A5B6 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
TCRBV3S1A0A5B6 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms