Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV40A0A0B4J280 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
TRAV40A0A0B4J280 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV40A0A0B4J280 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV40A0A0B4J280 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
TRAV40A0A0B4J280 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.48■□□□□ 0.71
TRAV40A0A0B4J280 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
TRAV40A0A0B4J280 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.48■□□□□ 0.71
TRAV40A0A0B4J280 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
TRAV40A0A0B4J280 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
TRAV40A0A0B4J280 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV40A0A0B4J280 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC19.47■□□□□ 0.71
TRAV40A0A0B4J280 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV40A0A0B4J280 AC022616.5-201ENST00000518796 181 ntBASIC19.47■□□□□ 0.71
TRAV40A0A0B4J280 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV40A0A0B4J280 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
TRAV40A0A0B4J280 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC19.47■□□□□ 0.71
TRAV40A0A0B4J280 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV40A0A0B4J280 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.47■□□□□ 0.71
TRAV40A0A0B4J280 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV40A0A0B4J280 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.47■□□□□ 0.71
TRAV40A0A0B4J280 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV40A0A0B4J280 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV40A0A0B4J280 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.46■□□□□ 0.71
TRAV40A0A0B4J280 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV40A0A0B4J280 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV40A0A0B4J280 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV40A0A0B4J280 GUSBP5-201ENST00000418136 578 ntBASIC19.46■□□□□ 0.71
TRAV40A0A0B4J280 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.46■□□□□ 0.71
TRAV40A0A0B4J280 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.46■□□□□ 0.71
TRAV40A0A0B4J280 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV40A0A0B4J280 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV40A0A0B4J280 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV40A0A0B4J280 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV40A0A0B4J280 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV40A0A0B4J280 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.45■□□□□ 0.7
TRAV40A0A0B4J280 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV40A0A0B4J280 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV40A0A0B4J280 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV40A0A0B4J280 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC19.45■□□□□ 0.7
TRAV40A0A0B4J280 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV40A0A0B4J280 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
TRAV40A0A0B4J280 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV40A0A0B4J280 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
TRAV40A0A0B4J280 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV40A0A0B4J280 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
TRAV40A0A0B4J280 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
TRAV40A0A0B4J280 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV40A0A0B4J280 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TRAV40A0A0B4J280 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV40A0A0B4J280 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV40A0A0B4J280 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TRAV40A0A0B4J280 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV40A0A0B4J280 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
TRAV40A0A0B4J280 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV40A0A0B4J280 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV40A0A0B4J280 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV40A0A0B4J280 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV40A0A0B4J280 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
TRAV40A0A0B4J280 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV40A0A0B4J280 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV40A0A0B4J280 THA1P-201ENST00000590384 1145 ntBASIC19.43■□□□□ 0.7
TRAV40A0A0B4J280 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV40A0A0B4J280 PKM-203ENST00000389093 2279 ntTSL 5 BASIC19.42■□□□□ 0.7
TRAV40A0A0B4J280 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV40A0A0B4J280 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.42■□□□□ 0.7
TRAV40A0A0B4J280 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC19.42■□□□□ 0.7
TRAV40A0A0B4J280 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV40A0A0B4J280 AC239859.2-201ENST00000444165 318 ntBASIC19.42■□□□□ 0.7
TRAV40A0A0B4J280 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV40A0A0B4J280 SNAI3-AS1-204ENST00000567997 2048 ntBASIC19.42■□□□□ 0.7
TRAV40A0A0B4J280 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV40A0A0B4J280 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TRAV40A0A0B4J280 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.41■□□□□ 0.7
TRAV40A0A0B4J280 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.41■□□□□ 0.7
TRAV40A0A0B4J280 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC19.41■□□□□ 0.7
TRAV40A0A0B4J280 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.41■□□□□ 0.7
TRAV40A0A0B4J280 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC19.41■□□□□ 0.7
TRAV40A0A0B4J280 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.41■□□□□ 0.7
TRAV40A0A0B4J280 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.41■□□□□ 0.7
TRAV40A0A0B4J280 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV40A0A0B4J280 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV40A0A0B4J280 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC19.4■□□□□ 0.7
TRAV40A0A0B4J280 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV40A0A0B4J280 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC19.4■□□□□ 0.7
TRAV40A0A0B4J280 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC19.4■□□□□ 0.7
TRAV40A0A0B4J280 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
TRAV40A0A0B4J280 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
TRAV40A0A0B4J280 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV40A0A0B4J280 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV40A0A0B4J280 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.39■□□□□ 0.69
TRAV40A0A0B4J280 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.39■□□□□ 0.69
TRAV40A0A0B4J280 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV40A0A0B4J280 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV40A0A0B4J280 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
TRAV40A0A0B4J280 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
TRAV40A0A0B4J280 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV40A0A0B4J280 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TRAV40A0A0B4J280 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TRAV40A0A0B4J280 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 227.8 ms