Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
PCDHA1Q9Y5I3 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
PCDHA1Q9Y5I3 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
PCDHA1Q9Y5I3 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
PCDHA1Q9Y5I3 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
PCDHA1Q9Y5I3 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
PCDHA1Q9Y5I3 BEX3-202ENST00000372634 753 ntTSL 2 BASIC27.71■■■□□ 2.03
PCDHA1Q9Y5I3 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC27.71■■■□□ 2.03
PCDHA1Q9Y5I3 RARRES2P1-201ENST00000474487 481 ntBASIC27.71■■■□□ 2.03
PCDHA1Q9Y5I3 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
PCDHA1Q9Y5I3 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC27.7■■■□□ 2.03
PCDHA1Q9Y5I3 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
PCDHA1Q9Y5I3 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
PCDHA1Q9Y5I3 KRT18P10-201ENST00000388836 1287 ntBASIC27.7■■■□□ 2.02
PCDHA1Q9Y5I3 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC27.7■■■□□ 2.02
PCDHA1Q9Y5I3 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC27.7■■■□□ 2.02
PCDHA1Q9Y5I3 PVT1_1.1-201ENST00000615125 194 ntBASIC27.7■■■□□ 2.02
PCDHA1Q9Y5I3 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
PCDHA1Q9Y5I3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.02
PCDHA1Q9Y5I3 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
PCDHA1Q9Y5I3 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
PCDHA1Q9Y5I3 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC27.69■■■□□ 2.02
PCDHA1Q9Y5I3 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC27.69■■■□□ 2.02
PCDHA1Q9Y5I3 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC27.69■■■□□ 2.02
PCDHA1Q9Y5I3 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC27.69■■■□□ 2.02
PCDHA1Q9Y5I3 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC27.68■■■□□ 2.02
PCDHA1Q9Y5I3 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC27.68■■■□□ 2.02
PCDHA1Q9Y5I3 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
PCDHA1Q9Y5I3 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC27.68■■■□□ 2.02
PCDHA1Q9Y5I3 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC27.67■■■□□ 2.02
PCDHA1Q9Y5I3 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
PCDHA1Q9Y5I3 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
PCDHA1Q9Y5I3 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC27.66■■■□□ 2.02
PCDHA1Q9Y5I3 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
PCDHA1Q9Y5I3 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC27.65■■■□□ 2.02
PCDHA1Q9Y5I3 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC27.65■■■□□ 2.02
PCDHA1Q9Y5I3 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC27.65■■■□□ 2.02
PCDHA1Q9Y5I3 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
PCDHA1Q9Y5I3 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
PCDHA1Q9Y5I3 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC27.65■■■□□ 2.02
PCDHA1Q9Y5I3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
PCDHA1Q9Y5I3 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC27.64■■■□□ 2.02
PCDHA1Q9Y5I3 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
PCDHA1Q9Y5I3 MTX2-204ENST00000443241 799 ntTSL 3 BASIC27.64■■■□□ 2.02
PCDHA1Q9Y5I3 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
PCDHA1Q9Y5I3 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
PCDHA1Q9Y5I3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
PCDHA1Q9Y5I3 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
PCDHA1Q9Y5I3 IDNK-201ENST00000376417 511 ntTSL 5 BASIC27.63■■■□□ 2.01
PCDHA1Q9Y5I3 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
PCDHA1Q9Y5I3 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
PCDHA1Q9Y5I3 KRT8P33-201ENST00000508125 1423 ntBASIC27.63■■■□□ 2.01
PCDHA1Q9Y5I3 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC27.63■■■□□ 2.01
PCDHA1Q9Y5I3 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC27.62■■■□□ 2.01
PCDHA1Q9Y5I3 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
PCDHA1Q9Y5I3 LONRF2P2-201ENST00000439212 571 ntBASIC27.62■■■□□ 2.01
PCDHA1Q9Y5I3 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC27.62■■■□□ 2.01
PCDHA1Q9Y5I3 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC27.62■■■□□ 2.01
PCDHA1Q9Y5I3 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC27.61■■■□□ 2.01
PCDHA1Q9Y5I3 AC103834.1-201ENST00000520383 144 ntBASIC27.61■■■□□ 2.01
PCDHA1Q9Y5I3 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
PCDHA1Q9Y5I3 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
PCDHA1Q9Y5I3 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
PCDHA1Q9Y5I3 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
PCDHA1Q9Y5I3 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC27.6■■■□□ 2.01
PCDHA1Q9Y5I3 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
PCDHA1Q9Y5I3 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC27.6■■■□□ 2.01
PCDHA1Q9Y5I3 AC019171.1-201ENST00000601251 1056 ntBASIC27.6■■■□□ 2.01
PCDHA1Q9Y5I3 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
PCDHA1Q9Y5I3 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC27.6■■■□□ 2.01
PCDHA1Q9Y5I3 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
PCDHA1Q9Y5I3 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC27.6■■■□□ 2.01
PCDHA1Q9Y5I3 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
PCDHA1Q9Y5I3 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
PCDHA1Q9Y5I3 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC27.59■■■□□ 2.01
PCDHA1Q9Y5I3 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
PCDHA1Q9Y5I3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
PCDHA1Q9Y5I3 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
PCDHA1Q9Y5I3 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
PCDHA1Q9Y5I3 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
PCDHA1Q9Y5I3 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC27.58■■■□□ 2.01
PCDHA1Q9Y5I3 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC27.57■■■□□ 2
PCDHA1Q9Y5I3 ERN1-208ENST00000606895 2068 ntBASIC27.56■■■□□ 2
PCDHA1Q9Y5I3 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
PCDHA1Q9Y5I3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
PCDHA1Q9Y5I3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
PCDHA1Q9Y5I3 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC27.56■■■□□ 2
PCDHA1Q9Y5I3 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
PCDHA1Q9Y5I3 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC27.56■■■□□ 2
PCDHA1Q9Y5I3 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC27.56■■■□□ 2
PCDHA1Q9Y5I3 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC27.56■■■□□ 2
PCDHA1Q9Y5I3 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
PCDHA1Q9Y5I3 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC27.56■■■□□ 2
PCDHA1Q9Y5I3 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC27.55■■■□□ 2
PCDHA1Q9Y5I3 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
PCDHA1Q9Y5I3 SNAI3-AS1-204ENST00000567997 2048 ntBASIC27.55■■■□□ 2
PCDHA1Q9Y5I3 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
PCDHA1Q9Y5I3 YBX1P4-201ENST00000392794 808 ntBASIC27.55■■■□□ 2
PCDHA1Q9Y5I3 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC27.55■■■□□ 2
PCDHA1Q9Y5I3 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC27.55■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms