Protein–RNA interactions for Protein: Q9H444

CHMP4B, Charged multivesicular body protein 4b, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4BQ9H444 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC30.32■■■□□ 2.44
CHMP4BQ9H444 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CHMP4BQ9H444 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CHMP4BQ9H444 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CHMP4BQ9H444 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CHMP4BQ9H444 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CHMP4BQ9H444 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC30.31■■■□□ 2.44
CHMP4BQ9H444 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC30.31■■■□□ 2.44
CHMP4BQ9H444 ABHD17AP3-201ENST00000503096 1137 ntBASIC30.31■■■□□ 2.44
CHMP4BQ9H444 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CHMP4BQ9H444 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CHMP4BQ9H444 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC30.31■■■□□ 2.44
CHMP4BQ9H444 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CHMP4BQ9H444 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
CHMP4BQ9H444 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC30.3■■■□□ 2.44
CHMP4BQ9H444 RNF126P1-201ENST00000567452 1320 ntBASIC30.3■■■□□ 2.44
CHMP4BQ9H444 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
CHMP4BQ9H444 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC30.3■■■□□ 2.44
CHMP4BQ9H444 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC30.29■■■□□ 2.44
CHMP4BQ9H444 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CHMP4BQ9H444 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC30.28■■■□□ 2.44
CHMP4BQ9H444 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
CHMP4BQ9H444 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CHMP4BQ9H444 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
CHMP4BQ9H444 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
CHMP4BQ9H444 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
CHMP4BQ9H444 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CHMP4BQ9H444 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC30.27■■■□□ 2.44
CHMP4BQ9H444 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CHMP4BQ9H444 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC30.27■■■□□ 2.44
CHMP4BQ9H444 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC30.27■■■□□ 2.44
CHMP4BQ9H444 AC097639.1-201ENST00000565519 1891 ntBASIC30.27■■■□□ 2.44
CHMP4BQ9H444 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.44
CHMP4BQ9H444 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.44
CHMP4BQ9H444 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CHMP4BQ9H444 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.26■■■□□ 2.43
CHMP4BQ9H444 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.43
CHMP4BQ9H444 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CHMP4BQ9H444 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CHMP4BQ9H444 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
CHMP4BQ9H444 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
CHMP4BQ9H444 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
CHMP4BQ9H444 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CHMP4BQ9H444 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CHMP4BQ9H444 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
CHMP4BQ9H444 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC30.25■■■□□ 2.43
CHMP4BQ9H444 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CHMP4BQ9H444 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CHMP4BQ9H444 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CHMP4BQ9H444 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
CHMP4BQ9H444 SNAI3-AS1-204ENST00000567997 2048 ntBASIC30.23■■■□□ 2.43
CHMP4BQ9H444 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
CHMP4BQ9H444 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CHMP4BQ9H444 KRT18P10-201ENST00000388836 1287 ntBASIC30.23■■■□□ 2.43
CHMP4BQ9H444 RAP2CP1-202ENST00000605179 643 ntBASIC30.23■■■□□ 2.43
CHMP4BQ9H444 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CHMP4BQ9H444 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CHMP4BQ9H444 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC30.23■■■□□ 2.43
CHMP4BQ9H444 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CHMP4BQ9H444 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CHMP4BQ9H444 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CHMP4BQ9H444 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC30.22■■■□□ 2.43
CHMP4BQ9H444 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CHMP4BQ9H444 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC30.21■■■□□ 2.43
CHMP4BQ9H444 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CHMP4BQ9H444 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
CHMP4BQ9H444 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CHMP4BQ9H444 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC30.2■■■□□ 2.43
CHMP4BQ9H444 AC026202.3-201ENST00000600805 1127 ntBASIC30.2■■■□□ 2.43
CHMP4BQ9H444 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC30.2■■■□□ 2.42
CHMP4BQ9H444 CEBPA-AS1-201ENST00000592982 2198 ntBASIC30.2■■■□□ 2.42
CHMP4BQ9H444 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CHMP4BQ9H444 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CHMP4BQ9H444 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CHMP4BQ9H444 HES4-204ENST00000484667 667 ntTSL 3 BASIC30.19■■■□□ 2.42
CHMP4BQ9H444 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC30.19■■■□□ 2.42
CHMP4BQ9H444 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
CHMP4BQ9H444 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CHMP4BQ9H444 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
CHMP4BQ9H444 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CHMP4BQ9H444 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CHMP4BQ9H444 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CHMP4BQ9H444 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC30.17■■■□□ 2.42
CHMP4BQ9H444 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC30.17■■■□□ 2.42
CHMP4BQ9H444 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
CHMP4BQ9H444 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
CHMP4BQ9H444 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC30.16■■■□□ 2.42
CHMP4BQ9H444 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CHMP4BQ9H444 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CHMP4BQ9H444 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC30.15■■■□□ 2.42
CHMP4BQ9H444 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC30.14■■■□□ 2.42
CHMP4BQ9H444 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC30.14■■■□□ 2.42
CHMP4BQ9H444 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC30.14■■■□□ 2.42
CHMP4BQ9H444 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
CHMP4BQ9H444 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC30.14■■■□□ 2.42
CHMP4BQ9H444 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
CHMP4BQ9H444 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
CHMP4BQ9H444 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CHMP4BQ9H444 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CHMP4BQ9H444 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC30.13■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms