Protein–RNA interactions for Protein: Q9H3E2

SNX25, Sorting nexin-25, humanhuman

Predictions only

Length 840 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX25Q9H3E2 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC25.7■■□□□ 1.7
SNX25Q9H3E2 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SNX25Q9H3E2 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SNX25Q9H3E2 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SNX25Q9H3E2 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
SNX25Q9H3E2 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SNX25Q9H3E2 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SNX25Q9H3E2 IDNK-203ENST00000405990 629 ntTSL 2 BASIC25.69■■□□□ 1.7
SNX25Q9H3E2 HYI-210ENST00000486909 905 ntTSL 5 BASIC25.69■■□□□ 1.7
SNX25Q9H3E2 BHLHE23-202ENST00000612929 1109 ntBASIC25.69■■□□□ 1.7
SNX25Q9H3E2 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC25.69■■□□□ 1.7
SNX25Q9H3E2 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC25.69■■□□□ 1.7
SNX25Q9H3E2 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC25.69■■□□□ 1.7
SNX25Q9H3E2 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SNX25Q9H3E2 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SNX25Q9H3E2 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SNX25Q9H3E2 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
SNX25Q9H3E2 AC139795.1-202ENST00000500444 432 ntBASIC25.68■■□□□ 1.7
SNX25Q9H3E2 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
SNX25Q9H3E2 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
SNX25Q9H3E2 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
SNX25Q9H3E2 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SNX25Q9H3E2 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SNX25Q9H3E2 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SNX25Q9H3E2 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SNX25Q9H3E2 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SNX25Q9H3E2 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
SNX25Q9H3E2 KRT18P10-201ENST00000388836 1287 ntBASIC25.66■■□□□ 1.7
SNX25Q9H3E2 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
SNX25Q9H3E2 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC25.66■■□□□ 1.7
SNX25Q9H3E2 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SNX25Q9H3E2 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SNX25Q9H3E2 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
SNX25Q9H3E2 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SNX25Q9H3E2 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC25.65■■□□□ 1.7
SNX25Q9H3E2 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC25.65■■□□□ 1.7
SNX25Q9H3E2 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
SNX25Q9H3E2 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
SNX25Q9H3E2 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC25.64■■□□□ 1.7
SNX25Q9H3E2 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
SNX25Q9H3E2 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
SNX25Q9H3E2 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
SNX25Q9H3E2 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC25.64■■□□□ 1.69
SNX25Q9H3E2 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.63■■□□□ 1.69
SNX25Q9H3E2 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SNX25Q9H3E2 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC25.63■■□□□ 1.69
SNX25Q9H3E2 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SNX25Q9H3E2 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.62■■□□□ 1.69
SNX25Q9H3E2 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
SNX25Q9H3E2 RPS2P7-201ENST00000447334 885 ntBASIC25.62■■□□□ 1.69
SNX25Q9H3E2 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC25.62■■□□□ 1.69
SNX25Q9H3E2 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
SNX25Q9H3E2 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC25.62■■□□□ 1.69
SNX25Q9H3E2 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SNX25Q9H3E2 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
SNX25Q9H3E2 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC25.61■■□□□ 1.69
SNX25Q9H3E2 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
SNX25Q9H3E2 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SNX25Q9H3E2 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.61■■□□□ 1.69
SNX25Q9H3E2 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SNX25Q9H3E2 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
SNX25Q9H3E2 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SNX25Q9H3E2 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.6■■□□□ 1.69
SNX25Q9H3E2 AC092803.2-201ENST00000564287 1899 ntBASIC25.6■■□□□ 1.69
SNX25Q9H3E2 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
SNX25Q9H3E2 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SNX25Q9H3E2 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
SNX25Q9H3E2 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC25.59■■□□□ 1.69
SNX25Q9H3E2 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SNX25Q9H3E2 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
SNX25Q9H3E2 AC087393.1-201ENST00000582896 145 ntBASIC25.59■■□□□ 1.69
SNX25Q9H3E2 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SNX25Q9H3E2 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC25.59■■□□□ 1.69
SNX25Q9H3E2 ERN1-208ENST00000606895 2068 ntBASIC25.59■■□□□ 1.69
SNX25Q9H3E2 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SNX25Q9H3E2 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.58■■□□□ 1.69
SNX25Q9H3E2 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC25.58■■□□□ 1.69
SNX25Q9H3E2 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC25.58■■□□□ 1.69
SNX25Q9H3E2 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC25.58■■□□□ 1.69
SNX25Q9H3E2 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SNX25Q9H3E2 AC074183.2-201ENST00000623112 922 ntBASIC25.58■■□□□ 1.69
SNX25Q9H3E2 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SNX25Q9H3E2 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC25.57■■□□□ 1.68
SNX25Q9H3E2 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC25.56■■□□□ 1.68
SNX25Q9H3E2 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SNX25Q9H3E2 AC010980.1-201ENST00000587192 1142 ntBASIC25.56■■□□□ 1.68
SNX25Q9H3E2 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SNX25Q9H3E2 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.56■■□□□ 1.68
SNX25Q9H3E2 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
SNX25Q9H3E2 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
SNX25Q9H3E2 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
SNX25Q9H3E2 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SNX25Q9H3E2 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SNX25Q9H3E2 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SNX25Q9H3E2 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SNX25Q9H3E2 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SNX25Q9H3E2 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.54■■□□□ 1.68
SNX25Q9H3E2 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SNX25Q9H3E2 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SNX25Q9H3E2 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms