Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC15.32■□□□□ 0.04
HSPG2P98160 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HSPG2P98160 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HSPG2P98160 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HSPG2P98160 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC15.31■□□□□ 0.04
HSPG2P98160 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC15.31■□□□□ 0.04
HSPG2P98160 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
HSPG2P98160 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC15.31■□□□□ 0.04
HSPG2P98160 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC15.31■□□□□ 0.04
HSPG2P98160 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HSPG2P98160 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC15.31■□□□□ 0.04
HSPG2P98160 GLI3-203ENST00000437480 451 ntTSL 2 BASIC15.31■□□□□ 0.04
HSPG2P98160 AC097381.1-201ENST00000429019 1296 ntBASIC15.3■□□□□ 0.04
HSPG2P98160 AC010997.5-201ENST00000609182 354 ntBASIC15.3■□□□□ 0.04
HSPG2P98160 MIR6724-1-201ENST00000616420 92 ntBASIC15.3■□□□□ 0.04
HSPG2P98160 MIR6724-2-201ENST00000616483 92 ntBASIC15.3■□□□□ 0.04
HSPG2P98160 MIR6724-4-201ENST00000617390 92 ntBASIC15.3■□□□□ 0.04
HSPG2P98160 MIR6724-3-201ENST00000622482 92 ntBASIC15.3■□□□□ 0.04
HSPG2P98160 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HSPG2P98160 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
HSPG2P98160 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HSPG2P98160 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HSPG2P98160 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HSPG2P98160 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC15.3■□□□□ 0.04
HSPG2P98160 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC15.3■□□□□ 0.04
HSPG2P98160 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC15.3■□□□□ 0.04
HSPG2P98160 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HSPG2P98160 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC15.29■□□□□ 0.04
HSPG2P98160 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HSPG2P98160 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HSPG2P98160 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HSPG2P98160 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HSPG2P98160 HYI-206ENST00000372434 1025 ntTSL 5 BASIC15.28■□□□□ 0.04
HSPG2P98160 AL355001.2-201ENST00000620617 1191 ntBASIC15.28■□□□□ 0.04
HSPG2P98160 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC15.28■□□□□ 0.04
HSPG2P98160 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC15.28■□□□□ 0.04
HSPG2P98160 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC15.28■□□□□ 0.04
HSPG2P98160 PARL-206ENST00000435888 1098 ntTSL 5 BASIC15.28■□□□□ 0.04
HSPG2P98160 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC15.28■□□□□ 0.04
HSPG2P98160 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC15.28■□□□□ 0.04
HSPG2P98160 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HSPG2P98160 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HSPG2P98160 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HSPG2P98160 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
HSPG2P98160 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HSPG2P98160 DENND3-207ENST00000518347 850 ntTSL 2 BASIC15.27■□□□□ 0.04
HSPG2P98160 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.04
HSPG2P98160 SENP5-202ENST00000419026 973 ntTSL 3 BASIC15.27■□□□□ 0.03
HSPG2P98160 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC15.27■□□□□ 0.03
HSPG2P98160 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HSPG2P98160 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HSPG2P98160 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC15.27■□□□□ 0.03
HSPG2P98160 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HSPG2P98160 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC15.26■□□□□ 0.03
HSPG2P98160 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC15.26■□□□□ 0.03
HSPG2P98160 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HSPG2P98160 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC15.26■□□□□ 0.03
HSPG2P98160 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC15.26■□□□□ 0.03
HSPG2P98160 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
HSPG2P98160 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC15.25■□□□□ 0.03
HSPG2P98160 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
HSPG2P98160 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HSPG2P98160 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HSPG2P98160 UNC93B3-201ENST00000308076 687 ntBASIC15.24■□□□□ 0.03
HSPG2P98160 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC15.24■□□□□ 0.03
HSPG2P98160 PBX2P1-201ENST00000493219 1291 ntBASIC15.24■□□□□ 0.03
HSPG2P98160 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HSPG2P98160 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HSPG2P98160 AC105265.2-201ENST00000467189 838 ntBASIC15.24■□□□□ 0.03
HSPG2P98160 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC15.24■□□□□ 0.03
HSPG2P98160 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HSPG2P98160 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HSPG2P98160 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HSPG2P98160 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HSPG2P98160 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HSPG2P98160 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HSPG2P98160 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC15.23■□□□□ 0.03
HSPG2P98160 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HSPG2P98160 AC024257.2-201ENST00000549699 147 ntBASIC15.23■□□□□ 0.03
HSPG2P98160 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC15.23■□□□□ 0.03
HSPG2P98160 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HSPG2P98160 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HSPG2P98160 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC15.23■□□□□ 0.03
HSPG2P98160 MTDHP2-201ENST00000601468 714 ntBASIC15.23■□□□□ 0.03
HSPG2P98160 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HSPG2P98160 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HSPG2P98160 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
HSPG2P98160 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC15.22■□□□□ 0.03
HSPG2P98160 MIR939-201ENST00000401314 82 ntBASIC15.22■□□□□ 0.03
HSPG2P98160 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC15.22■□□□□ 0.03
HSPG2P98160 MIR4281-201ENST00000580852 62 ntBASIC15.22■□□□□ 0.03
HSPG2P98160 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
HSPG2P98160 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HSPG2P98160 WHAMMP3-201ENST00000611636 1609 ntBASIC15.22■□□□□ 0.03
HSPG2P98160 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HSPG2P98160 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC15.22■□□□□ 0.03
HSPG2P98160 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HSPG2P98160 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
HSPG2P98160 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC15.22■□□□□ 0.03
HSPG2P98160 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms