Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX6-3A6NJ46 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX6-3A6NJ46 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX6-3A6NJ46 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX6-3A6NJ46 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX6-3A6NJ46 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX6-3A6NJ46 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.15■□□□□ 0.82
NKX6-3A6NJ46 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NKX6-3A6NJ46 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX6-3A6NJ46 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
NKX6-3A6NJ46 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
NKX6-3A6NJ46 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
NKX6-3A6NJ46 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.14■□□□□ 0.81
NKX6-3A6NJ46 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX6-3A6NJ46 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX6-3A6NJ46 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NKX6-3A6NJ46 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
NKX6-3A6NJ46 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NKX6-3A6NJ46 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NKX6-3A6NJ46 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NKX6-3A6NJ46 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
NKX6-3A6NJ46 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NKX6-3A6NJ46 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NKX6-3A6NJ46 NTF6A-201ENST00000591175 560 ntBASIC20.12■□□□□ 0.81
NKX6-3A6NJ46 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NKX6-3A6NJ46 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
NKX6-3A6NJ46 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NKX6-3A6NJ46 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.11■□□□□ 0.81
NKX6-3A6NJ46 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.11■□□□□ 0.81
NKX6-3A6NJ46 AC145676.1-201ENST00000514988 2004 ntBASIC20.11■□□□□ 0.81
NKX6-3A6NJ46 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.11■□□□□ 0.81
NKX6-3A6NJ46 AL592293.1-201ENST00000502889 1188 ntBASIC20.11■□□□□ 0.81
NKX6-3A6NJ46 U85056.1-201ENST00000616429 682 ntBASIC20.11■□□□□ 0.81
NKX6-3A6NJ46 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC20.11■□□□□ 0.81
NKX6-3A6NJ46 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.11■□□□□ 0.81
NKX6-3A6NJ46 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NKX6-3A6NJ46 AC091060.1-201ENST00000623524 1766 ntBASIC20.11■□□□□ 0.81
NKX6-3A6NJ46 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
NKX6-3A6NJ46 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
NKX6-3A6NJ46 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.1■□□□□ 0.81
NKX6-3A6NJ46 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.1■□□□□ 0.81
NKX6-3A6NJ46 AC010501.1-201ENST00000606270 1962 ntBASIC20.1■□□□□ 0.81
NKX6-3A6NJ46 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NKX6-3A6NJ46 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
NKX6-3A6NJ46 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC20.09■□□□□ 0.81
NKX6-3A6NJ46 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
NKX6-3A6NJ46 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NKX6-3A6NJ46 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NKX6-3A6NJ46 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
NKX6-3A6NJ46 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NKX6-3A6NJ46 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NKX6-3A6NJ46 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
NKX6-3A6NJ46 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
NKX6-3A6NJ46 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.08■□□□□ 0.8
NKX6-3A6NJ46 KRT18P10-201ENST00000388836 1287 ntBASIC20.07■□□□□ 0.8
NKX6-3A6NJ46 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NKX6-3A6NJ46 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.07■□□□□ 0.8
NKX6-3A6NJ46 DUSP8P4-201ENST00000399538 1761 ntBASIC20.07■□□□□ 0.8
NKX6-3A6NJ46 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NKX6-3A6NJ46 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NKX6-3A6NJ46 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NKX6-3A6NJ46 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
NKX6-3A6NJ46 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NKX6-3A6NJ46 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
NKX6-3A6NJ46 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NKX6-3A6NJ46 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NKX6-3A6NJ46 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
NKX6-3A6NJ46 AC018755.3-202ENST00000596210 929 ntBASIC20.06■□□□□ 0.8
NKX6-3A6NJ46 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NKX6-3A6NJ46 ERN1-208ENST00000606895 2068 ntBASIC20.06■□□□□ 0.8
NKX6-3A6NJ46 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NKX6-3A6NJ46 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NKX6-3A6NJ46 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
NKX6-3A6NJ46 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NKX6-3A6NJ46 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
NKX6-3A6NJ46 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NKX6-3A6NJ46 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NKX6-3A6NJ46 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NKX6-3A6NJ46 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
NKX6-3A6NJ46 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NKX6-3A6NJ46 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
NKX6-3A6NJ46 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NKX6-3A6NJ46 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NKX6-3A6NJ46 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.05■□□□□ 0.8
NKX6-3A6NJ46 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.04■□□□□ 0.8
NKX6-3A6NJ46 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX6-3A6NJ46 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX6-3A6NJ46 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX6-3A6NJ46 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NKX6-3A6NJ46 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
NKX6-3A6NJ46 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX6-3A6NJ46 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX6-3A6NJ46 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX6-3A6NJ46 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX6-3A6NJ46 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NKX6-3A6NJ46 KRT18P60-201ENST00000312876 1297 ntBASIC20.03■□□□□ 0.8
NKX6-3A6NJ46 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.03■□□□□ 0.8
NKX6-3A6NJ46 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX6-3A6NJ46 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
NKX6-3A6NJ46 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms